Identification and characterization of Cor413im proteins as novel components of the chloroplast inner envelope

Plant, Cell and Environment

Volumn 31, Issue 10, 2008, Pages 1470-1483

  Okawa, Kumiko ^a   Nakayama, Katsuhiro ^a   Kakizaki, Tomohiro ^a   Yamashita, Tetsuro ^b   Inaba, Takehito ^a  

^a Center of Excellence COE 21st Program   (Japan)

^b IWATE UNIVERSITY   (Japan)

Author keywords

Arabidopsis; Chloroplast envelope; Cold acclimation; COR413IM; Membrane proteins

Indexed keywords

ARABIDOPSIS PROTEIN; BACTERIAL DNA; COMPLEMENTARY DNA; MEMBRANE PROTEIN; PLANT RNA; T DNA; T-DNA;

CHLOROPLAST; DNA; GENE; METABOLISM; PLANT; PLASTID; PROTEIN; QUANTITATIVE ANALYSIS;

ARABIDOPSIS; ARTICLE; CHEMISTRY; CHLOROPLAST; FREEZING; GENE; GENE EXPRESSION REGULATION; GENETICS; INTRACELLULAR MEMBRANE; MOLECULAR CLONING; PHYLOGENY; SEQUENCE ALIGNMENT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHLOROPLASTS; CLONING, MOLECULAR; DNA, BACTERIAL; DNA, COMPLEMENTARY; FREEZING; GENES, PLANT; INTRACELLULAR MEMBRANES; MEMBRANE PROTEINS; MUTAGENESIS, INSERTIONAL; PHYLOGENY; RNA, PLANT; SEQUENCE ALIGNMENT;

ARABIDOPSIS;

EID: 51549091825     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2008.01854.x     Document Type: Article

References (53)

1. Agarwal M., Hao Y., Kapoor A., Dong C.H., Fujii H., Zheng X. Zhu J.K. (2006) A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. Journal of Biological Chemistry 281, 37636 37645.
2. Alonso J.M., Stepanova A.N., Leisse T.J., et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301, 653 657.
3. Baldi P., Grossi M., Pecchioni N., Vale G. Cattivelli L. (1999) High expression level of a gene coding for a chloroplastic amino acid selective channel protein is correlated to cold acclimation in cereals. Plant Molecular Biology 41, 233 243.
4. Block M.A., Douce R., Joyard J. Rolland N. (2007) Chloroplast envelope membranes: a dynamic interface between plastids and the cytosol. Photosynthesis Research 92, 225 244.
5. Breton G., Danyluk J., Charron J.B. Sarhan F. (2003) Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Plant Physiology 132, 64 74.
6. Clough S.J. Bent A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. The Plant Journal 16, 735 743.
7. Danyluk J., Perron A., Houde M., Limin A., Fowler B., Benhamou N. Sarhan F. (1998) Accumulation of an acidic dehydrin in the vicinity of the plasma membrane during cold acclimation of wheat. The Plant Cell 10, 623 638.
8. Drea S.C., Lao N.T., Wolfe K.H. Kavanagh T.A. (2006) Gene duplication, exon gain and neofunctionalization of OEP16-related genes in land plants. The Plant Journal 46, 723 735.
9. Ferro M., Salvi D., Riviere-Rolland H., Vermat T., Seigneurin-Berny D., Grunwald D., Garin J., Joyard J. Rolland N. (2002) Integral membrane proteins of the chloroplast envelope: identification and subcellular localization of new transporters. Proceedings of the National Academy of Sciences of the United States of America 99, 11487 11492.
10. Ferro M., Salvi D., Brugiere S., Miras S., Kowalski S., Louwagie M., Garin J., Joyard J. Rolland N. (2003) Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Molecular & Cellular Proteomics 2, 325 345.
11. Friso G., Giacomelli L., Ytterberg A.J., Peltier J.B., Rudella A., Sun Q. Wijk K.J. (2004) In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. The Plant Cell 16, 478 499.
12. Froehlich J.E., Wilkerson C.G., Ray W.K., McAndrew R.S., Osteryoung K.W., Gage D.A. Phinney B.S. (2003) Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Journal of Proteome Research 2, 413 425.
13. Guy C., Kaplan F., Kopka J., Selbig J. Hincha D.K. (2008) Metabolomics of temperature stress. Physiologia Plantarum 132, 220 235.
14. Hurry V., Strand A., Furbank R. Stitt M. (2000) The role of inorganic phosphate in the development of freezing tolerance and the acclimatization of photosynthesis to low temperature is revealed by the pho mutants of Arabidopsis thaliana. The Plant Journal 24, 383 396.
15. Inaba T. Schnell D.J. (2008) Protein trafficking to plastids: one theme, many variations. The Biochemical Journal 413, 15 28.
16. Inaba T., Nagano Y., Nagasaki T. Sasaki Y. (2002) Distinct localization of two closely related Ypt3/Rab11 proteins on the trafficking pathway in higher plants. Journal of Biological Chemistry 277, 9183 9188.
17. Inaba T., Li M., Alvarez-Huerta M., Kessler F. Schnell D.J. (2003) atTic110 functions as a scaffold for coordinating the stromal events of protein import into chloroplasts. Journal of Biological Chemistry 278, 38617 38627.
18. Inaba T., Alvarez-Huerta M., Li M., Bauer J., Ewers C., Kessler F. Schnell D.J. (2005) Arabidopsis Tic110 is essential for the assembly and function of the protein import machinery of plastids. The Plant Cell 17, 1482 1496.
19. Inoue K., Baldwin A.J., Shipman R.L., Matsui K., Theg S.M. Ohme-Takagi M. (2005) Complete maturation of the plastid protein translocation channel requires a type I signal peptidase. Journal of Cell Biology 171, 425 430.
20. Jackson D.T., Froehlich J.E. Keegstra K. (1998) The hydrophilic domain of Tic110, an inner envelope membrane component of the chloroplastic protein translocation apparatus, faces the stromal compartment. Journal of Biological Chemistry 273, 16583 16588.
21. Joyard J., Teyssier E., Miege C., Berny-Seigneurin D., Marechal E., Block M.A., Dorne A.J., Rolland N., Ajlani G. Douce R. (1998) The biochemical machinery of plastid envelope membranes. Plant Physiology 118, 715 723.
22. Kawamura Y. Uemura M. (2003) Mass spectrometric approach for identifying putative plasma membrane proteins of Arabidopsis leaves associated with cold acclimation. The Plant Journal 36, 141 154.
23. Keegstra K. Yousif A.E. (1986) Isolation and characterization of chloroplast envelope membranes. Methods in Enzymology 118, 316 325.
24. Kimura M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111 120.
25. Kleffmann T., Russenberger D., von Zychlinski A., Christopher W., Sjolander K., Gruissem W. Baginsky S. (2004) The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Current Biology 14, 354 362.
26. Koo A.J. Ohlrogge J.B. (2002) The predicted candidates of Arabidopsis plastid inner envelope membrane proteins and their expression profiles. Plant Physiology 130, 823 836.
27. Kouranov A., Chen X., Fuks B. Schnell D.J. (1998) Tic20 and Tic22 are new components of the protein import apparatus at the chloroplast inner envelope membrane. Journal of Cell Biology 143, 991 1002.
28. Li H., Culligan K., Dixon R.A. Chory J. (1995) CUE1: a mesophyll cell-specific positive regulator of light-controlled gene expression in Arabidopsis. The Plant Cell 7, 1599 1610.
29. Li M. Schnell D.J. (2006) Reconstitution of protein targeting to the inner envelope membrane of chloroplasts. Journal of Cell Biology 175, 249 259.
30. Lundmark M., Cavaco A.M., Trevanion S. Hurry V. (2006) Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant, Cell & Environment 29, 1703 1714.
31. Maruyama K., Sakuma Y., Kasuga M., Ito Y., Seki M., Goda H., Shimada Y., Yoshida S., Shinozaki K. Yamaguchi-Shinozaki K. (2004) Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. The Plant Journal 38, 982 993.
32. Motohashi R., Ito T., Kobayashi M., Taji T., Nagata N., Asami T., Yoshida S., Yamaguchi-Shinozaki K. Shinozaki K. (2003) Functional analysis of the 37 kDa inner envelope membrane polypeptide in chloroplast biogenesis using a Ds-tagged Arabidopsis pale-green mutant. The Plant Journal 34, 719 731.
33. Nakayama K., Okawa K., Kakizaki T., Honma T., Itoh H. Inaba T. (2007) Arabidopsis Cor15am is a chloroplast stromal protein that has cryoprotective activity and forms oligomers. Plant Physiology 144, 513 523.
34. Pohlmeyer K., Soll J., Steinkamp T., Hinnah S. Wagner R. (1997) Isolation and characterization of an amino acid-selective channel protein present in the chloroplastic outer envelope membrane. Proceedings of the National Academy of Sciences of the United States of America 94, 9504 9509.
35. Pollmann S., Springer A., Buhr F., Lahroussi A., Samol I., Bonneville J.M., Tichtinsky G., von Wettstein D., Reinbothe C. Reinbothe S. (2007) A plant porphyria related to defects in plastid import of protochlorophyllide oxidoreductase A. Proceedings of the National Academy of Sciences of the United States of America 104, 2019 2023.
36. Rosso M.G., Li Y., Strizhov N., Reiss B., Dekker K. Weisshaar B. (2003) An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology 53, 247 259.
37. Rzhetsky A. Nei M. (1992) A simple method for estimating and testing minimum-evolution trees. Molecular Biology and Evolution 9, 945 967.
38. Schmid M., Davison T.S., Henz S.R., Pape U.J., Demar M., Vingron M., Scholkopf B., Weigel D. Lohmann J.U. (2005) A gene expression map of Arabidopsis thaliana development. Nature Genetics 37, 501 506.
39. Schnell D.J., Kessler F. Blobel G. (1994) Isolation of components of the chloroplast protein import machinery. Science 266, 1007 1012.
40. Schwacke R., Schneider A., van der Graaff E., Fischer K., Catoni E., Desimone M., Frommer W.B., Flugge U.I. Kunze R. (2003) ARAMEMNON, a novel database for Arabidopsis integral membrane proteins. Plant Physiology 131, 16 26.
41. Seigneurin-Berny D., Gravot A., Auroy P., et al. (2006) HMA1, a new Cu-ATPase of the chloroplast envelope, is essential for growth under adverse light conditions. Journal of Biological Chemistry 281, 2882 2892.
42. Smith M.D., Fitzpatrick L.M., Keegstra K. Schnell D.J. (2002) In vitro analysis of chloroplast protein import. In Current Protocols in Cell Biology (eds J.S. Bonifacino, M. Dasso, J. Lippincott-Schwartz, J.B. Harford K.M. Yamada pp. 11.16.11 11.16.21. John Wiley and Sons, Inc., New York, NY, USA.
43. Staehelin L.A. Newcomb E.H. (2000) Membrane structure and membrane organelles. In Biochemistry and Molecular Biology of Plants (eds B.B. Buchanan, W. Gruissem R.L. Jones pp. 2 50. American Society of Plant Physiologists, Rockville, MD, USA.
44. Stitt M. Hurry V. (2002) A plant for all seasons: alterations in photosynthetic carbon metabolism during cold acclimation in Arabidopsis. Current Opinion in Plant Biology 5, 199 206.
45. Streatfield S.J., Weber A., Kinsman E.A., Hausler R.E., Li J., Post-Beittenmiller D., Kaiser W.M., Pyke K.A., Flugge U.I. Chory J. (1999) The phosphoenolpyruvate/phosphate translocator is required for phenolic metabolism, palisade cell development, and plastid-dependent nuclear gene expression. The Plant Cell 11, 1609 1622.
46. Tamura K., Dudley J., Nei M. Kumar S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24, 1596 1599.
47. Teng Y.S., Su Y.S., Chen L.J., Lee Y.J., Hwang I. Li H.M. (2006) Tic21 is an essential translocon component for protein translocation across the chloroplast inner envelope membrane. The Plant Cell 18, 2247 2257.
48. Thompson J.D., Higgins D.G. Gibson T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673 4680.
49. U N 1935) Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Japanese Journal of Botany 7, 389 452.
50. Uemura M. Steponkus P.L. (1997) Effect of cold acclimation on the lipid composition of the inner and outer membrane of the chloroplast envelope isolated from rye leaves. Plant Physiology 114, 1493 1500.
51. Uemura M., Joseph R.A. Steponkus P.L. (1995) Cold acclimation of Arabidopsis thaliana (effect on plasma membrane lipid composition and freeze-induced lesions). Plant Physiology 109, 15 30.
52. Wanner L.A. Junttila O. (1999) Cold-induced freezing tolerance in Arabidopsis. Plant Physiology 120, 391 400.
53. Weber A.P., Schwacke R. Flugge U.I. (2005) Solute transporters of the plastid envelope membrane. Annual Review of Plant Biology 56, 133 164.