-
1
-
-
33947224541
-
Phenylobacterium zucineum sp. nov., a facultative intracellular bacterium isolated from a human erythroleukemia cell line K562
-
10.1016/j.syapm.2006.07.002 16908113
-
Zhang K Han W Zhang R Xu X Pan Q Hu X Phenylobacterium zucineum sp. nov., a facultative intracellular bacterium isolated from a human erythroleukemia cell line K562 Syst Appl Microbiol 2007, 30(3):207-212. 10.1016/j.syapm.2006.07.002 16908113
-
(2007)
Syst Appl Microbiol
, vol.30
, Issue.3
, pp. 207-212
-
-
Zhang, K.1
Han, W.2
Zhang, R.3
Xu, X.4
Pan, Q.5
Hu, X.6
-
2
-
-
0021912080
-
Phenylobacterium immobile gen. nov., sp. nov., a gram-negative bacterium that degrades the herbicide chloridazon
-
Lingens F Blecher R Blecher H Blobel F Eberspacher J Frohner C Gorisch H Gorisch H Layh G Phenylobacterium immobile gen. nov., sp. nov., a gram-negative bacterium that degrades the herbicide chloridazon Int J Syst Bacteriol 1985, 35:26-39.
-
(1985)
Int J Syst Bacteriol
, vol.35
, pp. 26-39
-
-
Lingens, F.1
Blecher, R.2
Blecher, H.3
Blobel, F.4
Eberspacher, J.5
Frohner, C.6
Gorisch, H.7
Gorisch, H.8
Layh, G.9
-
3
-
-
9744253723
-
Phenylobacterium lituiforme sp. nov., a moderately thermophilic bacterium from a subsurface aquifer, and emended description of the genus Phenylobacterium
-
10.1099/ijs.0.63138-0 15545448
-
Kanso S Patel BK Phenylobacterium lituiforme sp. nov., a moderately thermophilic bacterium from a subsurface aquifer, and emended description of the genus Phenylobacterium Int J Syst Evol Microbiol 2004, 54(Pt 6):2141-2146. 10.1099/ijs.0.63138-0 15545448
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, Issue.PART 6
, pp. 2141-2146
-
-
Kanso, S.1
Patel, B.K.2
-
4
-
-
19444383811
-
Phenylobacterium falsum sp. nov., an Alphaproteobacterium isolated from a nonsaline alkaline groundwater, and emended description of the genus Phenylobacterium
-
10.1016/j.syapm.2005.02.005 15997701
-
Tiago I Mendes V Pires C Morais PV Verssimo A Phenylobacterium falsum sp. nov., an Alphaproteobacterium isolated from a nonsaline alkaline groundwater, and emended description of the genus Phenylobacterium Syst Appl Microbiol 2005, 28(4):295-302. 10.1016/j.syapm.2005.02.005 15997701
-
(2005)
Syst Appl Microbiol
, vol.28
, Issue.4
, pp. 295-302
-
-
Tiago, I.1
Mendes, V.2
Pires, C.3
Morais, P.V.4
Verssimo, A.5
-
5
-
-
26244454785
-
Phenylobacterium koreense sp. nov., isolated from South Korea
-
10.1099/ijs.0.63687-0 16166702
-
Aslam Z Im WT Ten LN Lee ST Phenylobacterium koreense sp. nov., isolated from South Korea Int J Syst Evol Microbiol 2005, 55(Pt 5):2001-2005. 10.1099/ijs.0.63687-0 16166702
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, Issue.PART 5
, pp. 2001-2005
-
-
Aslam, Z.1
Im, W.T.2
Ten, L.N.3
Lee, S.T.4
-
6
-
-
20344374161
-
Conserved modular design of an oxygen sensory/signaling network with species-specific output
-
1142393 15911751 10.1073/pnas.0503022102
-
Crosson S McGrath PT Stephens C McAdams HH Shapiro L Conserved modular design of an oxygen sensory/signaling network with species-specific output Proc Natl Acad Sci U S A 2005, 102(22):8018-8023. 1142393 15911751 10.1073/pnas.0503022102
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.22
, pp. 8018-8023
-
-
Crosson, S.1
McGrath, P.T.2
Stephens, C.3
McAdams, H.H.4
Shapiro, L.5
-
7
-
-
3242813728
-
The homogentisate pathway: A central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida
-
10.1128/JB.186.15.5062-5077.2004
-
Arias-Barrau E Olivera ER Luengo JM Fernandez C Galan B Garcia JL Diaz E Minambres B The homogentisate pathway: A central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida J Bacteriol 2004, 186(15):5062-5077. 451635 15262943 10.1128/JB.186.15.5062-5077.2004
-
(2004)
J Bacteriol
, vol.186
, Issue.15
, pp. 5062-5077
-
-
Arias-Barrau, E.1
Olivera, E.R.2
Luengo, J.M.3
Fernandez, C.4
Galan, B.5
Garcia, J.L.6
Diaz, E.7
Minambres, B.8
-
8
-
-
0036936782
-
Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01
-
2003/01/22 10.1046/j.1462-2920.2002.00371.x 12534467
-
Martinez-Bueno MA Tobes R Rey M Ramos JL Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01 Environ Microbiol 2003/01/22 2002, 4(12):842-855. 10.1046/j.1462-2920.2002.00371.x 12534467
-
(2002)
Environ Microbiol
, vol.4
, Issue.12
, pp. 842-855
-
-
Martinez-Bueno, M.A.1
Tobes, R.2
Rey, M.3
Ramos, J.L.4
-
9
-
-
0031745718
-
The extracytoplasmic function sigma factors: Role and regulation
-
10.1046/j.1365-2958.1998.00865.x 9680198
-
Missiakas D Raina S The extracytoplasmic function sigma factors: Role and regulation Mol Microbiol 1998, 28(6):1059-1066. 10.1046/ j.1365-2958.1998.00865.x 9680198
-
(1998)
Mol Microbiol
, vol.28
, Issue.6
, pp. 1059-1066
-
-
Missiakas, D.1
Raina, S.2
-
10
-
-
0242291971
-
Genomic analysis of secretion systems
-
10.1016/j.mib.2003.09.005 14572546
-
Pallen MJ Chaudhuri RR Henderson IR Genomic analysis of secretion systems Curr Opin Microbiol 2003, 6(5):519-527. 10.1016/ j.mib.2003.09.005 14572546
-
(2003)
Curr Opin Microbiol
, vol.6
, Issue.5
, pp. 519-527
-
-
Pallen, M.J.1
Chaudhuri, R.R.2
Henderson, I.R.3
-
11
-
-
28544442609
-
Protein translocation across biological membranes
-
10.1126/science.1113752 16322447
-
Wickner W Schekman R Protein translocation across biological membranes Science 2005, 310(5753):1452-1456. 10.1126/science.1113752 16322447
-
(2005)
Science
, vol.310
, Issue.5753
, pp. 1452-1456
-
-
Wickner, W.1
Schekman, R.2
-
12
-
-
32944462721
-
Bacterial adhesion and entry into host cells
-
10.1016/j.cell.2006.02.012 16497583
-
Pizarro-Cerda J Cossart P Bacterial adhesion and entry into host cells Cell 2006, 124(4):715-727. 10.1016/j.cell.2006.02.012 16497583
-
(2006)
Cell
, vol.124
, Issue.4
, pp. 715-727
-
-
Pizarro-Cerda, J.1
Cossart, P.2
-
13
-
-
2442626618
-
Adaptation of the Brucellae to their intracellular niche
-
10.1111/j.1365-2958.2004.04017.x 15101970
-
Roop RM 2nd Bellaire BH Valderas MW Cardelli JA Adaptation of the Brucellae to their intracellular niche Mol Microbiol 2004, 52(3):621-630. 10.1111/j.1365-2958.2004.04017.x 15101970
-
(2004)
Mol Microbiol
, vol.52
, Issue.3
, pp. 621-630
-
-
Roop II, R.M.1
Bellaire, B.H.2
Valderas, M.W.3
Cardelli, J.A.4
-
14
-
-
0031029702
-
Role of oxidants in microbial pathophysiology
-
172912 8993856
-
Miller RA Britigan BE Role of oxidants in microbial pathophysiology Clin Microbiol Rev 1997, 10(1):1-18. 172912 8993856
-
(1997)
Clin Microbiol Rev
, vol.10
, Issue.1
, pp. 1-18
-
-
Miller, R.A.1
Britigan, B.E.2
-
15
-
-
0036772990
-
Oxidative stress response genes in Mycobacterium tuberculosis: Role of ahpC in resistance to peroxynitrite and stage-specific survival in macrophages
-
12368447
-
Master SS Springer B Sander P Boettger EC Deretic V Timmins GS Oxidative stress response genes in Mycobacterium tuberculosis: Role of ahpC in resistance to peroxynitrite and stage-specific survival in macrophages Microbiology 2002, 148(Pt 10):3139-3144. 12368447
-
(2002)
Microbiology
, vol.148
, Issue.10
, pp. 3139-3144
-
-
Master, S.S.1
Springer, B.2
Sander, P.3
Boettger, E.C.4
Deretic, V.5
Timmins, G.S.6
-
16
-
-
0034255209
-
Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens
-
10922044 10.1073/pnas.97.16.8841
-
Nathan C Shiloh MU Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens Proc Natl Acad Sci U S A 2000, 97(16):8841-8848. 34021 10922044 10.1073/ pnas.97.16.8841
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.16
, pp. 8841-8848
-
-
Nathan, C.1
Shiloh, M.U.2
-
17
-
-
0033759220
-
Iron metabolism in pathogenic bacteria
-
10.1146/annurev.micro.54.1.881 11018148
-
Ratledge C Dover LG Iron metabolism in pathogenic bacteria Annu Rev Microbiol 2000, 54:881-941. 10.1146/annurev.micro.54.1.881 11018148
-
(2000)
Annu Rev Microbiol
, vol.54
, pp. 881-941
-
-
Ratledge, C.1
Dover, L.G.2
-
18
-
-
0035957330
-
Complete genome sequence of Caulobacter crescentus
-
31192
-
Nierman WC Feldblyum TV Laub MT Paulsen IT Nelson KE Eisen JA Heidelberg JF Alley MR Ohta N Maddock JR Potocka I Nelson WC Newton A Stephens C Phadke ND Ely B DeBoy RT Dodson RJ Durkin AS Gwinn ML Haft DH Kolonay JF Smit J Craven MB Khouri H Shetty J Berry K Utterback T Tran K Wolf A Vamathevan J Ermolaeva M White O Salzberg SL Venter JC Shapiro L Fraser CM Complete genome sequence of Caulobacter crescentus Proc Natl Acad Sci U S A 2001 98 7 4136 4141 31192 11259647 10.1073/pnas.061029298
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 4136-4141
-
-
Nierman, W.C.1
Feldblyum, T.V.2
Laub, M.T.3
Paulsen, I.T.4
Nelson, K.E.5
Eisen, J.A.6
Heidelberg, J.F.7
Alley, M.R.8
Ohta, N.9
Maddock, J.R.10
Potocka, I.11
Nelson, W.C.12
Newton, A.13
Stephens, C.14
Phadke, N.D.15
Ely, B.16
DeBoy, R.T.17
Dodson, R.J.18
Durkin, A.S.19
Gwinn, M.L.20
Haft, D.H.21
Kolonay, J.F.22
Smit, J.23
Craven, M.B.24
Khouri, H.25
Shetty, J.26
Berry, K.27
Utterback, T.28
Tran, K.29
Wolf, A.30
Vamathevan, J.31
Ermolaeva, M.32
White, O.33
Salzberg, S.L.34
Venter, J.C.35
Shapiro, L.36
Fraser, C.M.37
more..
-
19
-
-
0037007079
-
Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle
-
123699 11930012 10.1073/pnas.062065699
-
Laub MT Chen SL Shapiro L McAdams HH Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle Proc Natl Acad Sci U S A 2002, 99(7):4632-4637. 123699 11930012 10.1073/pnas.062065699
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.7
, pp. 4632-4637
-
-
Laub, M.T.1
Chen, S.L.2
Shapiro, L.3
McAdams, H.H.4
-
20
-
-
2142647271
-
Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus
-
10.1038/nrmicro864 15031731
-
Skerker JM Laub MT Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus Nat Rev Microbiol 2004, 2(4):325-337. 10.1038/nrmicro864 15031731
-
(2004)
Nat Rev Microbiol
, vol.2
, Issue.4
, pp. 325-337
-
-
Skerker, J.M.1
Laub, M.T.2
-
21
-
-
0033536009
-
Feedback control of a master bacterial cell-cycle regulator
-
21969 10359766 10.1073/pnas.96.12.6648
-
Domian IJ Reisenauer A Shapiro L Feedback control of a master bacterial cell-cycle regulator Proc Natl Acad Sci U S A 1999, 96(12):6648-6653. 21969 10359766 10.1073/pnas.96.12.6648
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, Issue.12
, pp. 6648-6653
-
-
Domian, I.J.1
Reisenauer, A.2
Shapiro, L.3
-
22
-
-
0032859656
-
Bacterial DNA methylation: A cell cycle regulator?
-
94015 10464180
-
Reisenauer A Kahng LS McCollum S Shapiro L Bacterial DNA methylation: A cell cycle regulator? J Bacteriol 1999, 181(17):5135-5139. 94015 10464180
-
(1999)
J Bacteriol
, vol.181
, Issue.17
, pp. 5135-5139
-
-
Reisenauer, A.1
Kahng, L.S.2
McCollum, S.3
Shapiro, L.4
-
23
-
-
0030034983
-
Cell cycle control by an essential bacterial two-component signal transduction protein
-
10.1016/S0092-8674(00)80995-2 8548829
-
Quon KC Marczynski GT Shapiro L Cell cycle control by an essential bacterial two-component signal transduction protein Cell 1996, 84(1):83-93. 10.1016/S0092-8674(00)80995-2 8548829
-
(1996)
Cell
, vol.84
, Issue.1
, pp. 83-93
-
-
Quon, K.C.1
Marczynski, G.T.2
Shapiro, L.3
-
24
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
9521922
-
Ewing B Green P Base-calling of automated sequencer traces using phred. II. Error probabilities Genome Res 1998, 8(3):186-194. 9521922
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
25
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
9521921
-
Ewing B Hillier L Wendl MC Green P Base-calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res 1998, 8(3):175-185. 9521921
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
26
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
9521923
-
Gordon D Abajian C Green P Consed: A graphical tool for sequence finishing Genome Res 1998, 8(3):195-202. 9521923
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
27
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
10.1126/science.7542800 7542800
-
Fleischmann RD Adams MD White O Clayton RA Kirkness EF Kerlavage AR Bult CJ Tomb JF Dougherty BA Merrick JM McKenney K Sutton G Fitzhugh W Fields C Gocyne JD Scott J Shirley R Liu L Glodek A Kelley JM Weidman JF Phillips CA Spriggs T Hedblom E Cotton MD Utterback TR Hanna MC Nguyen DT Saudek DM Brandon RC Fine LD Fritchman JL Fuhrmann JL Geoghagen NSM Gnehm CL McDonald LA Small KV Fraser CM Smith HO Venter JC Whole-genome random sequencing and assembly of Haemophilus influenzae Rd Science 1995, 269(5223):496-512. 10.1126/science.7542800 7542800
-
(1995)
Science
, vol.269
, Issue.5223
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.12
Fitzhugh, W.13
Fields, C.14
Gocyne, J.D.15
Scott, J.16
Shirley, R.17
Liu, L.18
Glodek, A.19
Kelley, J.M.20
Weidman, J.F.21
Phillips, C.A.22
Spriggs, T.23
Hedblom, E.24
Cotton, M.D.25
Utterback, T.R.26
Hanna, M.C.27
Nguyen, D.T.28
Saudek, D.M.29
Brandon, R.C.30
Fine, L.D.31
Fritchman, J.L.32
Fuhrmann, J.L.33
Geoghagen, N.S.M.34
Gnehm, C.L.35
McDonald, L.A.36
Small, K.V.37
Fraser, C.M.38
Smith, H.O.39
Venter, J.C.40
more..
-
28
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
10.1126/science.1068037 11935017
-
Yu J Hu S Wang J Wong GK Li S Liu B Deng Y Dai L Zhou Y Zhang X Cao M Liu J Sun J Tang J Chen Y Huang X Lin W Ye C Tong W Cong L Geng J Han Y Li L Li W Hu G Huang X Li W Li J Liu Z Li L Liu J Qi Q Liu J Li L Li T Wang X Lu H Wu T Zhu M Ni P Han H Dong W Ren X Feng X Cui P Li X Wang H Xu X Zhai W Xu Z Zhang J He S Zhang J Xu J Zhang K Zheng X Dong J Zeng W Tao L Ye J Tan J Ren X Chen X He J Liu D Tian W Tian C Xia H Bao Q Li G Gao H Cao T Wang J Zhao W Li P Chen W Wang X Zhang Y Hu J Wang J Liu S Yang J Zhang G Xiong Y Li Z Mao L Zhou C Zhu Z Chen R Hao B Zheng W Chen S Guo W Li G Liu S Tao M Wang J Zhu L Yuan L Yang H A draft sequence of the rice genome (Oryza sativa L. ssp. indica) Science 2002, 296(5565):79-92. 10.1126/science.1068037 11935017
-
(2002)
Science
, vol.296
, Issue.5565
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Wong, G.K.4
Li, S.5
Liu, B.6
Deng, Y.7
Dai, L.8
Zhou, Y.9
Zhang, X.10
Cao, M.11
Liu, J.12
Sun, J.13
Tang, J.14
Chen, Y.15
Huang, X.16
Lin, W.17
Ye, C.18
Tong, W.19
Cong, L.20
Geng, J.21
Han, Y.22
Li, L.23
Li, W.24
Hu, G.25
Huang, X.26
Li, W.27
Li, J.28
Liu, Z.29
Li, L.30
Liu, J.31
Qi, Q.32
Liu, J.33
Li, L.34
Li, T.35
Wang, X.36
Lu, H.37
Wu, T.38
Zhu, M.39
Ni, P.40
Han, H.41
Dong, W.42
Ren, X.43
Feng, X.44
Cui, P.45
Li, X.46
Wang, H.47
Xu, X.48
Zhai, W.49
Xu, Z.50
Zhang, J.51
He, S.52
Zhang, J.53
Xu, J.54
Zhang, K.55
Zheng, X.56
Dong, J.57
Zeng, W.58
Tao, L.59
Ye, J.60
Tan, J.61
Ren, X.62
Chen, X.63
He, J.64
Liu, D.65
Tian, W.66
Tian, C.67
Xia, H.68
Bao, Q.69
Li, G.70
Gao, H.71
Cao, T.72
Wang, J.73
Zhao, W.74
Li, P.75
Chen, W.76
Wang, X.77
Zhang, Y.78
Hu, J.79
Wang, J.80
Liu, S.81
Yang, J.82
Zhang, G.83
Xiong, Y.84
Li, Z.85
Mao, L.86
Zhou, C.87
Zhu, Z.88
Chen, R.89
Hao, B.90
Zheng, W.91
Chen, S.92
Guo, W.93
Li, G.94
Liu, S.95
Tao, M.96
Wang, J.97
Zhu, L.98
Yuan, L.99
Yang, H.100
more..
-
29
-
-
55849107401
-
A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates
-
1820848 17375201 10.1371/journal.pone.0000315
-
Chen C Tang J Dong W Wang C Feng Y Wang J Zheng F Pan X Liu D Li M Song Y Zhu X Sun H Feng T Guo Z Ju A Ge J Dong Y Sun W Jiang Y Wang J Yan J Yang H Wang X Gao GF Yang R Wang J Yu J A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates PLoS ONE 2007, 2(3):e315. 1820848 17375201 10.1371/journal.pone.0000315
-
(2007)
PLoS ONE
, vol.2
, Issue.3
-
-
Chen, C.1
Tang, J.2
Dong, W.3
Wang, C.4
Feng, Y.5
Wang, J.6
Zheng, F.7
Pan, X.8
Liu, D.9
Li, M.10
Song, Y.11
Zhu, X.12
Sun, H.13
Feng, T.14
Guo, Z.15
Ju, A.16
Ge, J.17
Dong, Y.18
Sun, W.19
Jiang, Y.20
Wang, J.21
Yan, J.22
Yang, H.23
Wang, X.24
Gao, G.F.25
Yang, R.26
Wang, J.27
Yu, J.28
more..
-
30
-
-
0036112438
-
A complete sequence of the T. tengcongensis genome
-
186588 11997336 10.1101/gr.219302
-
Bao Q Tian Y Li W Xu Z Xuan Z Hu S Dong W Yang J Chen Y Xue Y Xu Y Lai X Huang L Dong X Ma Y Ling L Tan H Chen R Wang J Yu J Yang H A complete sequence of the T. tengcongensis genome Genome Res 2002, 12(5):689-700. 186588 11997336 10.1101/gr.219302
-
(2002)
Genome Res
, vol.12
, Issue.5
, pp. 689-700
-
-
Bao, Q.1
Tian, Y.2
Li, W.3
Xu, Z.4
Xuan, Z.5
Hu, S.6
Dong, W.7
Yang, J.8
Chen, Y.9
Xue, Y.10
Xu, Y.11
Lai, X.12
Huang, L.13
Dong, X.14
Ma, Y.15
Ling, L.16
Tan, H.17
Chen, R.18
Wang, J.19
Yu, J.20
Yang, H.21
more..
-
31
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
146525 9023104 10.1093/nar/25.5.955
-
Lowe TM Eddy SR tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res 1997, 25(5):955-964. 146525 9023104 10.1093/nar/25.5.955
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
32
-
-
0035890910
-
REPuter: The manifold applications of repeat analysis on a genomic scale
-
92531 11713313 10.1093/nar/29.22.4633
-
Kurtz S Choudhuri JV Ohlebusch E Schleiermacher C Stoye J Giegerich R REPuter: The manifold applications of repeat analysis on a genomic scale Nucleic Acids Res 2001, 29(22):4633-4642. 92531 11713313 10.1093/nar/ 29.22.4633
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.22
, pp. 4633-4642
-
-
Kurtz, S.1
Choudhuri, J.V.2
Ohlebusch, E.3
Schleiermacher, C.4
Stoye, J.5
Giegerich, R.6
-
33
-
-
0033066718
-
REPuter: Fast computation of maximal repeats in complete genomes
-
10.1093/bioinformatics/15.5.426 10366664
-
Kurtz S Schleiermacher C REPuter: Fast computation of maximal repeats in complete genomes Bioinformatics 1999, 15(5):426-427. 10.1093/ bioinformatics/15.5.426 10366664
-
(1999)
Bioinformatics
, vol.15
, Issue.5
, pp. 426-427
-
-
Kurtz, S.1
Schleiermacher, C.2
-
34
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
148753 10556321 10.1093/nar/27.23.4636
-
Delcher AL Harmon D Kasif S White O Salzberg SL Improved microbial gene identification with GLIMMER Nucleic Acids Res 1999, 27(23):4636-4641. 148753 10556321 10.1093/nar/27.23.4636
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.23
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
35
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25(17):3389-3402. 146917 9254694 10.1093/nar/25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
36
-
-
0036137327
-
A probabilistic method for identifying start codons in bacterial genomes
-
10.1093/bioinformatics/17.12.1123 11751220
-
Suzek BE Ermolaeva MD Schreiber M Salzberg SL A probabilistic method for identifying start codons in bacterial genomes Bioinformatics 2001, 17(12):1123-1130. 10.1093/bioinformatics/17.12.1123 11751220
-
(2001)
Bioinformatics
, vol.17
, Issue.12
, pp. 1123-1130
-
-
Suzek, B.E.1
Ermolaeva, M.D.2
Schreiber, M.3
Salzberg, S.L.4
-
37
-
-
0037251964
-
The InterPro Database, 2003 brings increased coverage and new features
-
165493 12520011 10.1093/nar/gkg046
-
Mulder NJ Apweiler R Attwood TK Bairoch A Barrell D Bateman A Binns D Biswas M Bradley P Bork P Bucher P Copley RR Courcelle E Das U Durbin R Falquet L Fleischmann W Griffiths-Jones S Haft D Harte N Hulo N Kahn D Kanapin A Krestyaninova M Lopez R Letunic I Lonsdale D Silventoinen V Orchard SE Pagni M Peyruc D Ponting CP Selengut JD Servant F Sigrist CJ Vaughan R Zdobnov EM The InterPro Database, 2003 brings increased coverage and new features Nucleic Acids Res 2003, 31(1):315-318. 165493 12520011 10.1093/nar/gkg046
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 315-318
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Barrell, D.5
Bateman, A.6
Binns, D.7
Biswas, M.8
Bradley, P.9
Bork, P.10
Bucher, P.11
Copley, R.R.12
Courcelle, E.13
Das, U.14
Durbin, R.15
Falquet, L.16
Fleischmann, W.17
Griffiths-Jones, S.18
Haft, D.19
Harte, N.20
Hulo, N.21
Kahn, D.22
Kanapin, A.23
Krestyaninova, M.24
Lopez, R.25
Letunic, I.26
Lonsdale, D.27
Silventoinen, V.28
Orchard, S.E.29
Pagni, M.30
Peyruc, D.31
Ponting, C.P.32
Selengut, J.D.33
Servant, F.34
Sigrist, C.J.35
Vaughan, R.36
Zdobnov, E.M.37
more..
-
38
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
1347464 16381885 10.1093/nar/gkj102
-
Kanehisa M Goto S Hattori M Aoki-Kinoshita KF Itoh M Kawashima S Katayama T Araki M Hirakawa M From genomics to chemical genomics: New developments in KEGG Nucleic Acids Res 2006, 34: Database issue D354-7. 1347464 16381885 10.1093/nar/gkj102
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
39
-
-
0030660581
-
A genomic perspective on protein families
-
10.1126/science.278.5338.631 9381173
-
Tatusov RL Koonin EV Lipman DJ A genomic perspective on protein families Science 1997, 278(5338):631-637. 10.1126/science.278.5338.631 9381173
-
(1997)
Science
, vol.278
, Issue.5338
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
40
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
222959 12969510 10.1186/1471-2105-4-41
-
Tatusov RL Fedorova ND Jackson JD Jacobs AR Kiryutin B Koonin EV Krylov DM Mazumder R Mekhedov SL Nikolskaya AN Rao BS Smirnov S Sverdlov AV Vasudevan S Wolf YI Yin JJ Natale DA The COG database: An updated version includes eukaryotes BMC Bioinformatics 2003, 4:41. 222959 12969510 10.1186/1471-2105-4-41
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
41
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
10.1093/molbev/msm092 17488738
-
Tamura K Dudley J Nei M Kumar S MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 2007, 24(8):1596-1599. 10.1093/molbev/msm092 17488738
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
42
-
-
37549018487
-
Environmental variability and modularity of bacterial metabolic networks
-
2007/09/25 2151768 17888177 10.1186/1471-2148-7-169
-
Parter M Kashtan N Alon U Environmental variability and modularity of bacterial metabolic networks BMC Evol Biol 2007/09/25 2007, 7:169. 2151768 17888177 10.1186/1471-2148-7-169
-
(2007)
BMC Evol Biol
, vol.7
, pp. 169
-
-
Parter, M.1
Kashtan, N.2
Alon, U.3
-
43
-
-
0035021816
-
Gluconobacter oxydans: Its biotechnological applications
-
2001/05/22 11361077
-
Gupta A Singh VK Qazi GN Kumar A Gluconobacter oxydans: Its biotechnological applications J Mol Microbiol Biotechnol 2001/05/22 2001, 3(3):445-456. 11361077
-
(2001)
J Mol Microbiol Biotechnol
, vol.3
, Issue.3
, pp. 445-456
-
-
Gupta, A.1
Singh, V.K.2
Qazi, G.N.3
Kumar, A.4
-
44
-
-
0035834151
-
The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome
-
59775 11593022 10.1073/pnas.201182798
-
Camargo AA Samaia HP Dias-Neto E Simao DF Migotto IA Briones MR Costa FF Nagai MA Verjovski-Almeida S Zago MA Andrade LE Carrer H El-Dorry HF Espreafico EM Habr-Gama A Giannella-Neto D Goldman GH Gruber A Hackel C Kimura ET Maciel RM Marie SK Martins EA Nobrega MP Paco-Larson ML Pardini MI Pereira GG Pesquero JB Rodrigues V Rogatto SR da Silva ID Sogayar MC Sonati MF Tajara EH Valentini SR Alberto FL Amaral ME Aneas I Arnaldi LA de Assis AM Bengtson MH Bergamo NA Bombonato V de Camargo ME Canevari RA Carraro DM Cerutti JM Correa ML Correa RF Costa MC Curcio C Hokama PO Ferreira AJ Furuzawa GK Gushiken T Ho PL Kimura E Krieger JE Leite LC Majumder P Marins M Marques ER Melo AS Melo MB Mestriner CA Miracca EC Miranda DC Nascimento AL Nobrega FG Ojopi EP Pandolfi JR Pessoa LG Prevedel AC Rahal P Rainho CA Reis EM Ribeiro ML da Ros N de Sa RG Sales MM Sant'anna SC dos Santos ML da Silva AM da Silva NP Silva WA Jr. da Silveira RA Sousa JF Stecconi D Tsukumo F Valente V Soares F Moreira ES Nunes DN Correa RG Zalcberg H Carvalho AF Reis LF Brentani RR Simpson AJ de Souza SJ The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome Proc Natl Acad Sci U S A 2001, 98(21):12103-12108. 59775 11593022 10.1073/pnas.201182798
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.21
, pp. 12103-12108
-
-
Camargo, A.A.1
Samaia, H.P.2
Dias-Neto, E.3
Simao, D.F.4
Migotto, I.A.5
Briones, M.R.6
Costa, F.F.7
Nagai, M.A.8
Verjovski-Almeida, S.9
Zago, M.A.10
Andrade, L.E.11
Carrer, H.12
El-Dorry, H.F.13
Espreafico, E.M.14
Habr-Gama, A.15
Giannella-Neto, D.16
Goldman, G.H.17
Gruber, A.18
Hackel, C.19
Kimura, E.T.20
Maciel, R.M.21
Marie, S.K.22
Martins, E.A.23
Nobrega, M.P.24
Paco-Larson, M.L.25
Pardini, M.I.26
Pereira, G.G.27
Pesquero, J.B.28
Rodrigues, V.29
Rogatto, S.R.30
da Silva, I.D.31
Sogayar, M.C.32
Sonati, M.F.33
Tajara, E.H.34
Valentini, S.R.35
Alberto, F.L.36
Amaral, M.E.37
Aneas, I.38
Arnaldi, L.A.39
de Assis, A.M.40
Bengtson, M.H.41
Bergamo, N.A.42
Bombonato, V.43
de Camargo, M.E.44
Canevari, R.A.45
Carraro, D.M.46
Cerutti, J.M.47
Correa, M.L.48
Correa, R.F.49
Costa, M.C.50
Curcio, C.51
Hokama, P.O.52
Ferreira, A.J.53
Furuzawa, G.K.54
Gushiken, T.55
Ho, P.L.56
Kimura, E.57
Krieger, J.E.58
Leite, L.C.59
Majumder, P.60
Marins, M.61
Marques, E.R.62
Melo, A.S.63
Melo, M.B.64
Mestriner, C.A.65
Miracca, E.C.66
Miranda, D.C.67
Nascimento, A.L.68
Nobrega, F.G.69
Ojopi, E.P.70
Pandolfi, J.R.71
Pessoa, L.G.72
Prevedel, A.C.73
Rahal, P.74
Rainho, C.A.75
Reis, E.M.76
Ribeiro, M.L.77
da Ros, N.78
de Sa, R.G.79
Sales, M.M.80
Sant'anna, S.C.81
dos Santos, M.L.82
da Silva, A.M.83
da Silva, N.P.84
Silva Jr., W.A.85
da Silveira, R.A.86
Sousa, J.F.87
Stecconi, D.88
Tsukumo, F.89
Valente, V.90
Soares, F.91
Moreira, E.S.92
Nunes, D.N.93
Correa, R.G.94
Zalcberg, H.95
Carvalho, A.F.96
Reis, L.F.97
Brentani, R.R.98
Simpson, A.J.99
de Souza, S.J.100
more..
-
45
-
-
12944262414
-
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags
-
10737800 10.1073/pnas.97.7.3491
-
Dias Neto E Correa RG Verjovski-Almeida S Briones MR Nagai MA da Silva W Jr. Zago MA Bordin S Costa FF Goldman GH Carvalho AF Matsukuma A Baia GS Simpson DH Brunstein A de Oliveira PS Bucher P Jongeneel CV O'Hare MJ Soares F Brentani RR Reis LF de Souza SJ Simpson AJ Shotgun sequencing of the human transcriptome with ORF expressed sequence tags Proc Natl Acad Sci U S A 2000, 97(7):3491-3496. 16267 10737800 10.1073/ pnas.97.7.3491
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.7
, pp. 3491-3496
-
-
Dias Neto, E.1
Correa, R.G.2
Verjovski-Almeida, S.3
Briones, M.R.4
Nagai, M.A.5
da Silva Jr., W.6
Zago, M.A.7
Bordin, S.8
Costa, F.F.9
Goldman, G.H.10
Carvalho, A.F.11
Matsukuma, A.12
Baia, G.S.13
Simpson, D.H.14
Brunstein, A.15
de Oliveira, P.S.16
Bucher, P.17
Jongeneel, C.V.18
O'Hare, M.J.19
Soares, F.20
Brentani, R.R.21
Reis, L.F.22
de Souza, S.J.23
Simpson, A.J.24
more..
-
46
-
-
7444262496
-
The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
-
528928 15489334 10.1101/gr.2596504
-
Gerhard DS Wagner L Feingold EA Shenmen CM Grouse LH Schuler G Klein SL Old S Rasooly R Good P Guyer M Peck AM Derge JG Lipman D Collins FS Jang W Sherry S Feolo M Misquitta L Lee E Rotmistrovsky K Greenhut SF Schaefer CF Buetow K Bonner TI Haussler D Kent J Kiekhaus M Furey T Brent M Prange C Schreiber K Shapiro N Bhat NK Hopkins RF Hsie F Driscoll T Soares MB Casavant TL Scheetz TE Brown-stein MJ Usdin TB Toshiyuki S Carninci P Piao Y Dudekula DB Ko MS Kawakami K Suzuki Y Sugano S Gruber CE Smith MR Simmons B Moore T Waterman R Johnson SL Ruan Y Wei CL Mathavan S Gunaratne PH Wu J Garcia AM Hulyk SW Fuh E Yuan Y Sneed A Kowis C Hodgson A Muzny DM McPherson J Gibbs RA Fahey J Helton E Ketteman M Madan A Rodrigues S Sanchez A Whiting M Madari A Young AC Wetherby KD Granite SJ Kwong PN Brinkley CP Pearson RL Bouffard GG Blakesly RW Green ED Dickson MC Rodriguez AC Grimwood J Schmutz J Myers RM Butterfield YS Griffith M Griffith OL Krzywinski MI Liao N Morin R Palmquist D Petrescu AS Skalska U Smailus DE Stott JM Schnerch A Schein JE Jones SJ Holt RA Baross A Marra MA Clifton S Makowski KA Bosak S Malek J The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC) Genome Res 2004, 14(10B):2121-2127. 528928 15489334 10.1101/gr.2596504
-
(2004)
Genome Res
, vol.14
, Issue.10 B
, pp. 2121-2127
-
-
Gerhard, D.S.1
Wagner, L.2
Feingold, E.A.3
Shenmen, C.M.4
Grouse, L.H.5
Schuler, G.6
Klein, S.L.7
Old, S.8
Rasooly, R.9
Good, P.10
Guyer, M.11
Peck, A.M.12
Derge, J.G.13
Lipman, D.14
Collins, F.S.15
Jang, W.16
Sherry, S.17
Feolo, M.18
Misquitta, L.19
Lee, E.20
Rotmistrovsky, K.21
Greenhut, S.F.22
Schaefer, C.F.23
Buetow, K.24
Bonner, T.I.25
Haussler, D.26
Kent, J.27
Kiekhaus, M.28
Furey, T.29
Brent, M.30
Prange, C.31
Schreiber, K.32
Shapiro, N.33
Bhat, N.K.34
Hopkins, R.F.35
Hsie, F.36
Driscoll, T.37
Soares, M.B.38
Casavant, T.L.39
Scheetz, T.E.40
Brown-stein, M.J.41
Usdin, T.B.42
Toshiyuki, S.43
Carninci, P.44
Piao, Y.45
Dudekula, D.B.46
Ko, M.S.47
Kawakami, K.48
Suzuki, Y.49
Sugano, S.50
Gruber, C.E.51
Smith, M.R.52
Simmons, B.53
Moore, T.54
Waterman, R.55
Johnson, S.L.56
Ruan, Y.57
Wei, C.L.58
Mathavan, S.59
Gunaratne, P.H.60
Wu, J.61
Garcia, A.M.62
Hulyk, S.W.63
Fuh, E.64
Yuan, Y.65
Sneed, A.66
Kowis, C.67
Hodgson, A.68
Muzny, D.M.69
McPherson, J.70
Gibbs, R.A.71
Fahey, J.72
Helton, E.73
Ketteman, M.74
Madan, A.75
Rodrigues, S.76
Sanchez, A.77
Whiting, M.78
Madari, A.79
Young, A.C.80
Wetherby, K.D.81
Granite, S.J.82
Kwong, P.N.83
Brinkley, C.P.84
Pearson, R.L.85
Bouffard, G.G.86
Blakesly, R.W.87
Green, E.D.88
Dickson, M.C.89
Rodriguez, A.C.90
Grimwood, J.91
Schmutz, J.92
Myers, R.M.93
Butterfield, Y.S.94
Griffith, M.95
Griffith, O.L.96
Krzywinski, M.I.97
Liao, N.98
Morin, R.99
Palmquist, D.100
Petrescu, A.S.101
Skalska, U.102
Smailus, D.E.103
Stott, J.M.104
Schnerch, A.105
Schein, J.E.106
Jones, S.J.107
Holt, R.A.108
Baross, A.109
Marra, M.A.110
Clifton, S.111
Makowski, K.A.112
Bosak, S.113
Malek, J.114
more..
|