메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

Complete genome of Phenylobacterium zucineum - A novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; PROTEIN CTRA; RNA 16S; RNA 23S; RNA 5S; TRANSFER RNA; BACTERIAL DNA; CTRA PROTEIN, CAULOBACTER; DNA BINDING PROTEIN; TRANSCRIPTION FACTOR;

EID: 51249107341     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-386     Document Type: Article
Times cited : (10)

References (46)
  • 1
    • 33947224541 scopus 로고    scopus 로고
    • Phenylobacterium zucineum sp. nov., a facultative intracellular bacterium isolated from a human erythroleukemia cell line K562
    • 10.1016/j.syapm.2006.07.002 16908113
    • Zhang K Han W Zhang R Xu X Pan Q Hu X Phenylobacterium zucineum sp. nov., a facultative intracellular bacterium isolated from a human erythroleukemia cell line K562 Syst Appl Microbiol 2007, 30(3):207-212. 10.1016/j.syapm.2006.07.002 16908113
    • (2007) Syst Appl Microbiol , vol.30 , Issue.3 , pp. 207-212
    • Zhang, K.1    Han, W.2    Zhang, R.3    Xu, X.4    Pan, Q.5    Hu, X.6
  • 3
    • 9744253723 scopus 로고    scopus 로고
    • Phenylobacterium lituiforme sp. nov., a moderately thermophilic bacterium from a subsurface aquifer, and emended description of the genus Phenylobacterium
    • 10.1099/ijs.0.63138-0 15545448
    • Kanso S Patel BK Phenylobacterium lituiforme sp. nov., a moderately thermophilic bacterium from a subsurface aquifer, and emended description of the genus Phenylobacterium Int J Syst Evol Microbiol 2004, 54(Pt 6):2141-2146. 10.1099/ijs.0.63138-0 15545448
    • (2004) Int J Syst Evol Microbiol , vol.54 , Issue.PART 6 , pp. 2141-2146
    • Kanso, S.1    Patel, B.K.2
  • 4
    • 19444383811 scopus 로고    scopus 로고
    • Phenylobacterium falsum sp. nov., an Alphaproteobacterium isolated from a nonsaline alkaline groundwater, and emended description of the genus Phenylobacterium
    • 10.1016/j.syapm.2005.02.005 15997701
    • Tiago I Mendes V Pires C Morais PV Verssimo A Phenylobacterium falsum sp. nov., an Alphaproteobacterium isolated from a nonsaline alkaline groundwater, and emended description of the genus Phenylobacterium Syst Appl Microbiol 2005, 28(4):295-302. 10.1016/j.syapm.2005.02.005 15997701
    • (2005) Syst Appl Microbiol , vol.28 , Issue.4 , pp. 295-302
    • Tiago, I.1    Mendes, V.2    Pires, C.3    Morais, P.V.4    Verssimo, A.5
  • 5
    • 26244454785 scopus 로고    scopus 로고
    • Phenylobacterium koreense sp. nov., isolated from South Korea
    • 10.1099/ijs.0.63687-0 16166702
    • Aslam Z Im WT Ten LN Lee ST Phenylobacterium koreense sp. nov., isolated from South Korea Int J Syst Evol Microbiol 2005, 55(Pt 5):2001-2005. 10.1099/ijs.0.63687-0 16166702
    • (2005) Int J Syst Evol Microbiol , vol.55 , Issue.PART 5 , pp. 2001-2005
    • Aslam, Z.1    Im, W.T.2    Ten, L.N.3    Lee, S.T.4
  • 6
    • 20344374161 scopus 로고    scopus 로고
    • Conserved modular design of an oxygen sensory/signaling network with species-specific output
    • 1142393 15911751 10.1073/pnas.0503022102
    • Crosson S McGrath PT Stephens C McAdams HH Shapiro L Conserved modular design of an oxygen sensory/signaling network with species-specific output Proc Natl Acad Sci U S A 2005, 102(22):8018-8023. 1142393 15911751 10.1073/pnas.0503022102
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.22 , pp. 8018-8023
    • Crosson, S.1    McGrath, P.T.2    Stephens, C.3    McAdams, H.H.4    Shapiro, L.5
  • 7
    • 3242813728 scopus 로고    scopus 로고
    • The homogentisate pathway: A central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida
    • 10.1128/JB.186.15.5062-5077.2004
    • Arias-Barrau E Olivera ER Luengo JM Fernandez C Galan B Garcia JL Diaz E Minambres B The homogentisate pathway: A central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida J Bacteriol 2004, 186(15):5062-5077. 451635 15262943 10.1128/JB.186.15.5062-5077.2004
    • (2004) J Bacteriol , vol.186 , Issue.15 , pp. 5062-5077
    • Arias-Barrau, E.1    Olivera, E.R.2    Luengo, J.M.3    Fernandez, C.4    Galan, B.5    Garcia, J.L.6    Diaz, E.7    Minambres, B.8
  • 8
    • 0036936782 scopus 로고    scopus 로고
    • Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01
    • 2003/01/22 10.1046/j.1462-2920.2002.00371.x 12534467
    • Martinez-Bueno MA Tobes R Rey M Ramos JL Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01 Environ Microbiol 2003/01/22 2002, 4(12):842-855. 10.1046/j.1462-2920.2002.00371.x 12534467
    • (2002) Environ Microbiol , vol.4 , Issue.12 , pp. 842-855
    • Martinez-Bueno, M.A.1    Tobes, R.2    Rey, M.3    Ramos, J.L.4
  • 9
    • 0031745718 scopus 로고    scopus 로고
    • The extracytoplasmic function sigma factors: Role and regulation
    • 10.1046/j.1365-2958.1998.00865.x 9680198
    • Missiakas D Raina S The extracytoplasmic function sigma factors: Role and regulation Mol Microbiol 1998, 28(6):1059-1066. 10.1046/ j.1365-2958.1998.00865.x 9680198
    • (1998) Mol Microbiol , vol.28 , Issue.6 , pp. 1059-1066
    • Missiakas, D.1    Raina, S.2
  • 10
    • 0242291971 scopus 로고    scopus 로고
    • Genomic analysis of secretion systems
    • 10.1016/j.mib.2003.09.005 14572546
    • Pallen MJ Chaudhuri RR Henderson IR Genomic analysis of secretion systems Curr Opin Microbiol 2003, 6(5):519-527. 10.1016/ j.mib.2003.09.005 14572546
    • (2003) Curr Opin Microbiol , vol.6 , Issue.5 , pp. 519-527
    • Pallen, M.J.1    Chaudhuri, R.R.2    Henderson, I.R.3
  • 11
    • 28544442609 scopus 로고    scopus 로고
    • Protein translocation across biological membranes
    • 10.1126/science.1113752 16322447
    • Wickner W Schekman R Protein translocation across biological membranes Science 2005, 310(5753):1452-1456. 10.1126/science.1113752 16322447
    • (2005) Science , vol.310 , Issue.5753 , pp. 1452-1456
    • Wickner, W.1    Schekman, R.2
  • 12
    • 32944462721 scopus 로고    scopus 로고
    • Bacterial adhesion and entry into host cells
    • 10.1016/j.cell.2006.02.012 16497583
    • Pizarro-Cerda J Cossart P Bacterial adhesion and entry into host cells Cell 2006, 124(4):715-727. 10.1016/j.cell.2006.02.012 16497583
    • (2006) Cell , vol.124 , Issue.4 , pp. 715-727
    • Pizarro-Cerda, J.1    Cossart, P.2
  • 13
    • 2442626618 scopus 로고    scopus 로고
    • Adaptation of the Brucellae to their intracellular niche
    • 10.1111/j.1365-2958.2004.04017.x 15101970
    • Roop RM 2nd Bellaire BH Valderas MW Cardelli JA Adaptation of the Brucellae to their intracellular niche Mol Microbiol 2004, 52(3):621-630. 10.1111/j.1365-2958.2004.04017.x 15101970
    • (2004) Mol Microbiol , vol.52 , Issue.3 , pp. 621-630
    • Roop II, R.M.1    Bellaire, B.H.2    Valderas, M.W.3    Cardelli, J.A.4
  • 14
    • 0031029702 scopus 로고    scopus 로고
    • Role of oxidants in microbial pathophysiology
    • 172912 8993856
    • Miller RA Britigan BE Role of oxidants in microbial pathophysiology Clin Microbiol Rev 1997, 10(1):1-18. 172912 8993856
    • (1997) Clin Microbiol Rev , vol.10 , Issue.1 , pp. 1-18
    • Miller, R.A.1    Britigan, B.E.2
  • 15
    • 0036772990 scopus 로고    scopus 로고
    • Oxidative stress response genes in Mycobacterium tuberculosis: Role of ahpC in resistance to peroxynitrite and stage-specific survival in macrophages
    • 12368447
    • Master SS Springer B Sander P Boettger EC Deretic V Timmins GS Oxidative stress response genes in Mycobacterium tuberculosis: Role of ahpC in resistance to peroxynitrite and stage-specific survival in macrophages Microbiology 2002, 148(Pt 10):3139-3144. 12368447
    • (2002) Microbiology , vol.148 , Issue.10 , pp. 3139-3144
    • Master, S.S.1    Springer, B.2    Sander, P.3    Boettger, E.C.4    Deretic, V.5    Timmins, G.S.6
  • 16
    • 0034255209 scopus 로고    scopus 로고
    • Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens
    • 10922044 10.1073/pnas.97.16.8841
    • Nathan C Shiloh MU Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens Proc Natl Acad Sci U S A 2000, 97(16):8841-8848. 34021 10922044 10.1073/ pnas.97.16.8841
    • (2000) Proc Natl Acad Sci U S A , vol.97 , Issue.16 , pp. 8841-8848
    • Nathan, C.1    Shiloh, M.U.2
  • 17
    • 0033759220 scopus 로고    scopus 로고
    • Iron metabolism in pathogenic bacteria
    • 10.1146/annurev.micro.54.1.881 11018148
    • Ratledge C Dover LG Iron metabolism in pathogenic bacteria Annu Rev Microbiol 2000, 54:881-941. 10.1146/annurev.micro.54.1.881 11018148
    • (2000) Annu Rev Microbiol , vol.54 , pp. 881-941
    • Ratledge, C.1    Dover, L.G.2
  • 19
    • 0037007079 scopus 로고    scopus 로고
    • Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle
    • 123699 11930012 10.1073/pnas.062065699
    • Laub MT Chen SL Shapiro L McAdams HH Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle Proc Natl Acad Sci U S A 2002, 99(7):4632-4637. 123699 11930012 10.1073/pnas.062065699
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.7 , pp. 4632-4637
    • Laub, M.T.1    Chen, S.L.2    Shapiro, L.3    McAdams, H.H.4
  • 20
    • 2142647271 scopus 로고    scopus 로고
    • Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus
    • 10.1038/nrmicro864 15031731
    • Skerker JM Laub MT Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus Nat Rev Microbiol 2004, 2(4):325-337. 10.1038/nrmicro864 15031731
    • (2004) Nat Rev Microbiol , vol.2 , Issue.4 , pp. 325-337
    • Skerker, J.M.1    Laub, M.T.2
  • 21
    • 0033536009 scopus 로고    scopus 로고
    • Feedback control of a master bacterial cell-cycle regulator
    • 21969 10359766 10.1073/pnas.96.12.6648
    • Domian IJ Reisenauer A Shapiro L Feedback control of a master bacterial cell-cycle regulator Proc Natl Acad Sci U S A 1999, 96(12):6648-6653. 21969 10359766 10.1073/pnas.96.12.6648
    • (1999) Proc Natl Acad Sci U S A , vol.96 , Issue.12 , pp. 6648-6653
    • Domian, I.J.1    Reisenauer, A.2    Shapiro, L.3
  • 22
    • 0032859656 scopus 로고    scopus 로고
    • Bacterial DNA methylation: A cell cycle regulator?
    • 94015 10464180
    • Reisenauer A Kahng LS McCollum S Shapiro L Bacterial DNA methylation: A cell cycle regulator? J Bacteriol 1999, 181(17):5135-5139. 94015 10464180
    • (1999) J Bacteriol , vol.181 , Issue.17 , pp. 5135-5139
    • Reisenauer, A.1    Kahng, L.S.2    McCollum, S.3    Shapiro, L.4
  • 23
    • 0030034983 scopus 로고    scopus 로고
    • Cell cycle control by an essential bacterial two-component signal transduction protein
    • 10.1016/S0092-8674(00)80995-2 8548829
    • Quon KC Marczynski GT Shapiro L Cell cycle control by an essential bacterial two-component signal transduction protein Cell 1996, 84(1):83-93. 10.1016/S0092-8674(00)80995-2 8548829
    • (1996) Cell , vol.84 , Issue.1 , pp. 83-93
    • Quon, K.C.1    Marczynski, G.T.2    Shapiro, L.3
  • 24
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • 9521922
    • Ewing B Green P Base-calling of automated sequencer traces using phred. II. Error probabilities Genome Res 1998, 8(3):186-194. 9521922
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 25
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • 9521921
    • Ewing B Hillier L Wendl MC Green P Base-calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res 1998, 8(3):175-185. 9521921
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 26
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • 9521923
    • Gordon D Abajian C Green P Consed: A graphical tool for sequence finishing Genome Res 1998, 8(3):195-202. 9521923
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 31
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • 146525 9023104 10.1093/nar/25.5.955
    • Lowe TM Eddy SR tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res 1997, 25(5):955-964. 146525 9023104 10.1093/nar/25.5.955
    • (1997) Nucleic Acids Res , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 32
    • 0035890910 scopus 로고    scopus 로고
    • REPuter: The manifold applications of repeat analysis on a genomic scale
    • 92531 11713313 10.1093/nar/29.22.4633
    • Kurtz S Choudhuri JV Ohlebusch E Schleiermacher C Stoye J Giegerich R REPuter: The manifold applications of repeat analysis on a genomic scale Nucleic Acids Res 2001, 29(22):4633-4642. 92531 11713313 10.1093/nar/ 29.22.4633
    • (2001) Nucleic Acids Res , vol.29 , Issue.22 , pp. 4633-4642
    • Kurtz, S.1    Choudhuri, J.V.2    Ohlebusch, E.3    Schleiermacher, C.4    Stoye, J.5    Giegerich, R.6
  • 33
    • 0033066718 scopus 로고    scopus 로고
    • REPuter: Fast computation of maximal repeats in complete genomes
    • 10.1093/bioinformatics/15.5.426 10366664
    • Kurtz S Schleiermacher C REPuter: Fast computation of maximal repeats in complete genomes Bioinformatics 1999, 15(5):426-427. 10.1093/ bioinformatics/15.5.426 10366664
    • (1999) Bioinformatics , vol.15 , Issue.5 , pp. 426-427
    • Kurtz, S.1    Schleiermacher, C.2
  • 34
    • 0033485517 scopus 로고    scopus 로고
    • Improved microbial gene identification with GLIMMER
    • 148753 10556321 10.1093/nar/27.23.4636
    • Delcher AL Harmon D Kasif S White O Salzberg SL Improved microbial gene identification with GLIMMER Nucleic Acids Res 1999, 27(23):4636-4641. 148753 10556321 10.1093/nar/27.23.4636
    • (1999) Nucleic Acids Res , vol.27 , Issue.23 , pp. 4636-4641
    • Delcher, A.L.1    Harmon, D.2    Kasif, S.3    White, O.4    Salzberg, S.L.5
  • 35
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 146917 9254694 10.1093/nar/25.17.3389
    • Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25(17):3389-3402. 146917 9254694 10.1093/nar/25.17.3389
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 36
    • 0036137327 scopus 로고    scopus 로고
    • A probabilistic method for identifying start codons in bacterial genomes
    • 10.1093/bioinformatics/17.12.1123 11751220
    • Suzek BE Ermolaeva MD Schreiber M Salzberg SL A probabilistic method for identifying start codons in bacterial genomes Bioinformatics 2001, 17(12):1123-1130. 10.1093/bioinformatics/17.12.1123 11751220
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1123-1130
    • Suzek, B.E.1    Ermolaeva, M.D.2    Schreiber, M.3    Salzberg, S.L.4
  • 39
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • 10.1126/science.278.5338.631 9381173
    • Tatusov RL Koonin EV Lipman DJ A genomic perspective on protein families Science 1997, 278(5338):631-637. 10.1126/science.278.5338.631 9381173
    • (1997) Science , vol.278 , Issue.5338 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 41
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092 17488738
    • Tamura K Dudley J Nei M Kumar S MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 2007, 24(8):1596-1599. 10.1093/molbev/msm092 17488738
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 42
    • 37549018487 scopus 로고    scopus 로고
    • Environmental variability and modularity of bacterial metabolic networks
    • 2007/09/25 2151768 17888177 10.1186/1471-2148-7-169
    • Parter M Kashtan N Alon U Environmental variability and modularity of bacterial metabolic networks BMC Evol Biol 2007/09/25 2007, 7:169. 2151768 17888177 10.1186/1471-2148-7-169
    • (2007) BMC Evol Biol , vol.7 , pp. 169
    • Parter, M.1    Kashtan, N.2    Alon, U.3
  • 43
    • 0035021816 scopus 로고    scopus 로고
    • Gluconobacter oxydans: Its biotechnological applications
    • 2001/05/22 11361077
    • Gupta A Singh VK Qazi GN Kumar A Gluconobacter oxydans: Its biotechnological applications J Mol Microbiol Biotechnol 2001/05/22 2001, 3(3):445-456. 11361077
    • (2001) J Mol Microbiol Biotechnol , vol.3 , Issue.3 , pp. 445-456
    • Gupta, A.1    Singh, V.K.2    Qazi, G.N.3    Kumar, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.