-
1
-
-
3142747624
-
Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses
-
Ahlfors R, Lang S, Overmyer K, Jaspers P, Brosche M, Tauriainen A, Kollist H, Tuominen H, Belles-Boix E, Piippo M, Inze D, Palva ET, Kangasjarvi J (2004) Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses. Plant Cell 16:1925-1937
-
(2004)
Plant Cell
, vol.16
, pp. 1925-1937
-
-
Ahlfors, R.1
Lang, S.2
Overmyer, K.3
Jaspers, P.4
Brosche, M.5
Tauriainen, A.6
Kollist, H.7
Tuominen, H.8
Belles-Boix, E.9
Piippo, M.10
Inze, D.11
Palva, E.T.12
Kangasjarvi, J.13
-
2
-
-
32044434957
-
Features of Arabidopsis genes and genome discovered using full-length cDNAs
-
Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA (2006) Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol Biol 60:69-85
-
(2006)
Plant Mol Biol
, vol.60
, pp. 69-85
-
-
Alexandrov, N.N.1
Troukhan, M.E.2
Brover, V.V.3
Tatarinova, T.4
Flavell, R.B.5
Feldmann, K.A.6
-
3
-
-
0030980792
-
Microsatellites and a single-nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germ plasm
-
Ayres NM, McClung AM, Larkin PD, Bligh HFJ, Jones CA, Park WD (1997) Microsatellites and a single-nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germ plasm. TAG Theor Appl Genet 94:773-781
-
(1997)
TAG Theor Appl Genet
, vol.94
, pp. 773-781
-
-
Ayres, N.M.1
McClung, A.M.2
Larkin, P.D.3
Bligh, H.F.J.4
Jones, C.A.5
Park, W.D.6
-
5
-
-
0032189134
-
Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties
-
Bligh HF, Larkin PD, Roach PS, Jones CA, Fu H, Park WD (1998) Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties. Plant Mol Biol 38:407-415
-
(1998)
Plant Mol Biol
, vol.38
, pp. 407-415
-
-
Bligh, H.F.1
Larkin, P.D.2
Roach, P.S.3
Jones, C.A.4
Fu, H.5
Park, W.D.6
-
6
-
-
0030295312
-
Arabidopsis intron mutations and pre-mRNA splicing
-
Brown JWS (1996) Arabidopsis intron mutations and pre-mRNA splicing. Plant J 10:771-780
-
(1996)
Plant J
, vol.10
, pp. 771-780
-
-
Brown, J.W.S.1
-
7
-
-
0030174914
-
A null mutation in the first enzyme of flavonoid biosynthesis does not affect male fertility in Arabidopsis
-
Burbulis IE, Iacobucci M, Shirley BW (1996) A null mutation in the first enzyme of flavonoid biosynthesis does not affect male fertility in Arabidopsis. Plant Cell 8:1013-1025
-
(1996)
Plant Cell
, vol.8
, pp. 1013-1025
-
-
Burbulis, I.E.1
Iacobucci, M.2
Shirley, B.W.3
-
8
-
-
0032247416
-
Evolutionary fates and origins of U12-type introns
-
Burge CB, Padgett RA, Sharp PA (1998) Evolutionary fates and origins of U12-type introns. Mol Cell 2:773-785
-
(1998)
Mol Cell
, vol.2
, pp. 773-785
-
-
Burge, C.B.1
Padgett, R.A.2
Sharp, P.A.3
-
9
-
-
0032077096
-
Aberrant splicing of intron 1 leads to the heterogeneous 5′ UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content
-
Cai XL, Wang ZY, Xing YY, Zhang JL, Hong MM (1998) Aberrant splicing of intron 1 leads to the heterogeneous 5′ UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content. Plant J 14:459-465
-
(1998)
Plant J
, vol.14
, pp. 459-465
-
-
Cai, X.L.1
Wang, Z.Y.2
Xing, Y.Y.3
Zhang, J.L.4
Hong, M.M.5
-
10
-
-
0028260851
-
Interaction between the first and last nucleotides of pre-mRNA introns is a determinant of 3′ splice site selection in S. cerevisiae
-
Chanfreau G, Legrain P, Dujon B, Jacquier A (1994) Interaction between the first and last nucleotides of pre-mRNA introns is a determinant of 3′ splice site selection in S. cerevisiae. Nucleic Acids Res 22:1981-1987
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 1981-1987
-
-
Chanfreau, G.1
Legrain, P.2
Dujon, B.3
Jacquier, A.4
-
11
-
-
0034028486
-
Lesions in the sterol delta reductase gene of Arabidopsis cause dwarfism due to a block in brassinosteroid biosynthesis
-
Choe S, Tanaka A, Noguchi T, Fujioka S, Takatsuto S, Ross AS, Tax FE, Yoshida S, Feldmann KA (2000) Lesions in the sterol delta reductase gene of Arabidopsis cause dwarfism due to a block in brassinosteroid biosynthesis. Plant J 21:431-443
-
(2000)
Plant J
, vol.21
, pp. 431-443
-
-
Choe, S.1
Tanaka, A.2
Noguchi, T.3
Fujioka, S.4
Takatsuto, S.5
Ross, A.S.6
Tax, F.E.7
Yoshida, S.8
Feldmann, K.A.9
-
12
-
-
0027661361
-
Arabidopsis HY8 locus encodes phytochrome A
-
Dehesh K, Franci C, Parks BM, Seeley KA, Short TW, Tepperman JM, Quail PH (1993) Arabidopsis HY8 locus encodes phytochrome A. Plant Cell 5:1081-1088
-
(1993)
Plant Cell
, vol.5
, pp. 1081-1088
-
-
Dehesh, K.1
Franci, C.2
Parks, B.M.3
Seeley, K.A.4
Short, T.W.5
Tepperman, J.M.6
Quail, P.H.7
-
13
-
-
0031279984
-
Structural analysis of elements contributing to 5′ splice site selection in plant pre-mRNA transcripts
-
Egoavil C, Marton HA, Baynton CE, McCullough AJ, Schuler MA (1997) Structural analysis of elements contributing to 5′ splice site selection in plant pre-mRNA transcripts. Plant J 12:971-980
-
(1997)
Plant J
, vol.12
, pp. 971-980
-
-
Egoavil, C.1
Marton, H.A.2
Baynton, C.E.3
McCullough, A.J.4
Schuler, M.A.5
-
14
-
-
0029664611
-
Characterization of intronic uridine-rich sequence elements acting as possible targets for nuclear proteins during pre-mRNA splicing in Nicotiana plumbaginifolia
-
Gniadkowski M, Hemmings-Mieszczak M, Klahre U, Liu H-X, Filipowicz W (1996) Characterization of intronic uridine-rich sequence elements acting as possible targets for nuclear proteins during pre-mRNA splicing in Nicotiana plumbaginifolia. Nucleic Acids Res 24:619-627
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 619-627
-
-
Gniadkowski, M.1
Hemmings-Mieszczak, M.2
Klahre, U.3
Liu, H.-X.4
Filipowicz, W.5
-
15
-
-
0024967250
-
The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing
-
Goodall GJ, Filipowicz W (1989) The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing. Cell 58:473-483
-
(1989)
Cell
, vol.58
, pp. 473-483
-
-
Goodall, G.J.1
Filipowicz, W.2
-
16
-
-
0025799927
-
Different effects of intron nucleotide composition and secondary structure on pre-mRNA splicing in monocot and dicot plants
-
Goodall GJ, Filipowicz W (1991) Different effects of intron nucleotide composition and secondary structure on pre-mRNA splicing in monocot and dicot plants. EMBO J 10:2635-2644
-
(1991)
EMBO J
, vol.10
, pp. 2635-2644
-
-
Goodall, G.J.1
Filipowicz, W.2
-
17
-
-
0028366003
-
Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites
-
Hall SL, Padgett RA (1994) Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites. J Mol Biol 239:357-365
-
(1994)
J Mol Biol
, vol.239
, pp. 357-365
-
-
Hall, S.L.1
Padgett, R.A.2
-
18
-
-
0029989519
-
Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns
-
Hall SL, Padgett RA (1996) Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns. Science 271:1716-1718
-
(1996)
Science
, vol.271
, pp. 1716-1718
-
-
Hall, S.L.1
Padgett, R.A.2
-
19
-
-
0030989517
-
Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly
-
Haseloff J, Siemering KR, Prasher DC, Hodge S (1997) Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. Proc Natl Acad Sci USA 94:2122-2127
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 2122-2127
-
-
Haseloff, J.1
Siemering, K.R.2
Prasher, D.C.3
Hodge, S.4
-
20
-
-
33750962013
-
Intron size, abundance, and distribution within untranslated regions of genes
-
Hong X, Scofield DG, Lynch M (2006) Intron size, abundance, and distribution within untranslated regions of genes. Mol Biol Evol 23:2392-2404
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2392-2404
-
-
Hong, X.1
Scofield, D.G.2
Lynch, M.3
-
21
-
-
0023037969
-
Effect of mutations at the lariat branch acceptor site on beta-globin pre-mRNA splicing in vitro
-
Hornig H, Aebi M, Weissmann, C (1986) Effect of mutations at the lariat branch acceptor site on beta-globin pre-mRNA splicing in vitro. Nature 324:589-591
-
(1986)
Nature
, vol.324
, pp. 589-591
-
-
Hornig, H.1
Aebi, M.2
Weissmann, C.3
-
22
-
-
0035040117
-
Expression of intron-containing GUS constructs is reduced due to activation of a cryptic 5′ splice site
-
Ibrahim AF, Watters JA, Clark GP, Thomas CJ, Brown JW, Simpson CG (2001) Expression of intron-containing GUS constructs is reduced due to activation of a cryptic 5′ splice site. Mol Genet Genomics 265:455-460
-
(2001)
Mol Genet Genomics
, vol.265
, pp. 455-460
-
-
Ibrahim, A.F.1
Watters, J.A.2
Clark, G.P.3
Thomas, C.J.4
Brown, J.W.5
Simpson, C.G.6
-
23
-
-
0032127572
-
A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5′ splice site of the first intron
-
Isshiki M, Morino K, Nakajima M, Okagaki RJ, Wessler SR, Izawa T, Shimamoto K (1998) A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5′ splice site of the first intron. Plant J:15:133-138
-
(1998)
Plant J
, vol.15
, pp. 133-138
-
-
Isshiki, M.1
Morino, K.2
Nakajima, M.3
Okagaki, R.J.4
Wessler, S.R.5
Izawa, T.6
Shimamoto, K.7
-
24
-
-
0026532893
-
The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens
-
Jack T, Brockman, LL, Meyerowitz, EM (1992) The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens. Cell 68:683-697
-
(1992)
Cell
, vol.68
, pp. 683-697
-
-
Jack, T.1
Brockman, L.L.2
Meyerowitz, E.M.3
-
25
-
-
0025836071
-
A reappraisal of non-consensus mRNA splice sites
-
Jackson IJ (1991) A reappraisal of non-consensus mRNA splice sites. Nucleic Acids Res 19:3795-3798
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 3795-3798
-
-
Jackson, I.J.1
-
26
-
-
0029829071
-
SPINDLY, a tetratricopeptide repeat protein involved in gibberellin signal transduction in Arabidopsis
-
Jacobsen SE, Binkowski KA, Olszewski NE (1996) SPINDLY, a tetratricopeptide repeat protein involved in gibberellin signal transduction in Arabidopsis. Proc Natl Acad Sci USA 93:9292-9296
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 9292-9296
-
-
Jacobsen, S.E.1
Binkowski, K.A.2
Olszewski, N.E.3
-
27
-
-
0034967467
-
Cloning and characterization of irregular xylem4 (irx4): A severely lignin-deficient mutant of Arabidopsis
-
Jones L, Ennos AR, Turner SR (2001) Cloning and characterization of irregular xylem4 (irx4): a severely lignin-deficient mutant of Arabidopsis. Plant J 26:205-216
-
(2001)
Plant J
, vol.26
, pp. 205-216
-
-
Jones, L.1
Ennos, A.R.2
Turner, S.R.3
-
28
-
-
4143115768
-
Characterization of the splice sites in GT-AG and GC-AG introns in higher eukaryotes using full-length cDNAs
-
Kitamura-Abe S, Itoh H, Washio T, Tsutsumi A, Tomita M (2004) Characterization of the splice sites in GT-AG and GC-AG introns in higher eukaryotes using full-length cDNAs. J Bioinform Comput Biol 2:309-331
-
(2004)
J Bioinform Comput Biol
, vol.2
, pp. 309-331
-
-
Kitamura-Abe, S.1
Itoh, H.2
Washio, T.3
Tsutsumi, A.4
Tomita, M.5
-
29
-
-
0037160523
-
Cloning and characterization of two subunits of Arabidopsis thaliana nuclear cap-binding complex
-
Kmieciak M, Simpson CG, Lewandowska D, Brown JW, Jarmolowski A (2002) Cloning and characterization of two subunits of Arabidopsis thaliana nuclear cap-binding complex. Gene 283:171-183
-
(2002)
Gene
, vol.283
, pp. 171-183
-
-
Kmieciak, M.1
Simpson, C.G.2
Lewandowska, D.3
Brown, J.W.4
Jarmolowski, A.5
-
30
-
-
0032032206
-
U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize
-
Ko CH, Brendel V, Taylor RD, Walbot V (1998) U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize. Plant Mol Biol 36:573-583
-
(1998)
Plant Mol Biol
, vol.36
, pp. 573-583
-
-
Ko, C.H.1
Brendel, V.2
Taylor, R.D.3
Walbot, V.4
-
31
-
-
0029891101
-
The structure and function of proteins involved in mammalian pre-mRNA splicing
-
Kramer A (1996) The structure and function of proteins involved in mammalian pre-mRNA splicing. Annu Rev Biochem 65:367-409
-
(1996)
Annu Rev Biochem
, vol.65
, pp. 367-409
-
-
Kramer, A.1
-
32
-
-
0032841283
-
The AG dinucleotide terminating introns is important but not always required for pre-mRNA splicing in the maize endosperm
-
Lal S, Choi J-H, Hannah LC. (1999a) The AG dinucleotide terminating introns is important but not always required for pre-mRNA splicing in the maize endosperm. Plant Physiol. 120:65-72
-
(1999)
Plant Physiol
, vol.120
, pp. 65-72
-
-
Lal, S.1
Choi, J.-H.2
Hannah, L.C.3
-
33
-
-
0033213695
-
A splice site mutant of maize activates cryptic splice sites, elicits intron inclusion and exon exclusion, and permits branch point elucidation
-
Lal S, Choi JH, Shaw JR, Hannah LC (1999b) A splice site mutant of maize activates cryptic splice sites, elicits intron inclusion and exon exclusion, and permits branch point elucidation. Plant Physiol 121:411-418
-
(1999)
Plant Physiol
, vol.121
, pp. 411-418
-
-
Lal, S.1
Choi, J.H.2
Shaw, J.R.3
Hannah, L.C.4
-
34
-
-
0033167289
-
Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a single-nucleotide polymorphism
-
Larkin PD, Park WD (1999) Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a single-nucleotide polymorphism. Plant Mol Biol 40:719-727
-
(1999)
Plant Mol Biol
, vol.40
, pp. 719-727
-
-
Larkin, P.D.1
Park, W.D.2
-
35
-
-
0346942963
-
Molecular analysis of PHYA in wild-type and phytochrome A-deficient mutants of tomato
-
Lazarova GI, Kerckhoffs LH, Brandstadter J, Matsui M, Kendrick RE, Cordonnier-Pratt MM, Pratt LH (1998) Molecular analysis of PHYA in wild-type and phytochrome A-deficient mutants of tomato. Plant J 14:653-662
-
(1998)
Plant J
, vol.14
, pp. 653-662
-
-
Lazarova, G.I.1
Kerckhoffs, L.H.2
Brandstadter, J.3
Matsui, M.4
Kendrick, R.E.5
Cordonnier-Pratt, M.M.6
Pratt, L.H.7
-
36
-
-
0035476520
-
A computational scan for U12-dependent introns in the human genome sequence
-
Levine A, Durbin R (2001) A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Res 29:4006-4013
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4006-4013
-
-
Levine, A.1
Durbin, R.2
-
37
-
-
2442541263
-
Determinants of plant U12-dependent intron splicing efficiency
-
Lewandowska D, Simpson CG, Clark GP, Jennings NS, Barciszewska-Pacak M, Lin CF, Makalowski W, Brown JW, Jarmolowski A (2004) Determinants of plant U12-dependent intron splicing efficiency. Plant Cell 16:1340-1352
-
(2004)
Plant Cell
, vol.16
, pp. 1340-1352
-
-
Lewandowska, D.1
Simpson, C.G.2
Clark, G.P.3
Jennings, N.S.4
Barciszewska-Pacak, M.5
Lin, C.F.6
Makalowski, W.7
Brown, J.W.8
Jarmolowski, A.9
-
38
-
-
0030111434
-
Mapping of branchpoint nucleotides in mutant pre-mRNAs expressed in plant cells
-
Liu H-X, Filipowicz W (1996) Mapping of branchpoint nucleotides in mutant pre-mRNAs expressed in plant cells. Plant J 9:381-389
-
(1996)
Plant J
, vol.9
, pp. 381-389
-
-
Liu, H.-X.1
Filipowicz, W.2
-
39
-
-
0027219254
-
3′ splice site selection in dicot plant nuclei is position-dependent
-
Lou H, McCullough AJ, Schuler MA (1993a) 3′ splice site selection in dicot plant nuclei is position-dependent. Mol Cell Biol 13:4485-4493
-
(1993)
Mol Cell Biol
, vol.13
, pp. 4485-4493
-
-
Lou, H.1
McCullough, A.J.2
Schuler, M.A.3
-
40
-
-
0027568153
-
Expression of maize Adh1 intron mutants in tobacco nuclei
-
Lou H, McCullough AJ, Schuler MA (1993b) Expression of maize Adh1 intron mutants in tobacco nuclei. Plant J 3:393-403
-
(1993)
Plant J
, vol.3
, pp. 393-403
-
-
Lou, H.1
McCullough, A.J.2
Schuler, M.A.3
-
41
-
-
0028371218
-
Addition of A- and U-rich sequence increases the splicing efficiency of a deleted form of a maize intron
-
Luehrsen KR, Walbot V (1994) Addition of A- and U-rich sequence increases the splicing efficiency of a deleted form of a maize intron. Plant Mol Biol 24:449-463
-
(1994)
Plant Mol Biol
, vol.24
, pp. 449-463
-
-
Luehrsen, K.R.1
Walbot, V.2
-
42
-
-
1842330298
-
The role of branchpoint-3′ splice site spacing and interaction between intron terminal nucleotides in 3′ splice site selection in Saccharomyces cerevisiae
-
Luukkonen BGM, Seraphin B (1997) The role of branchpoint-3′ splice site spacing and interaction between intron terminal nucleotides in 3′ splice site selection in Saccharomyces cerevisiae. EMBO J 16:779-792
-
(1997)
EMBO J
, vol.16
, pp. 779-792
-
-
Luukkonen, B.G.M.1
Seraphin, B.2
-
43
-
-
0025877163
-
In vivo analysis of plant pre-mRNA splicing using an autonomously replicating vector
-
McCullough AJ, Lou H, Schuler MA (1991) In vivo analysis of plant pre-mRNA splicing using an autonomously replicating vector. Nucleic Acids Res 19:3001-3009
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 3001-3009
-
-
McCullough, A.J.1
Lou, H.2
Schuler, M.A.3
-
44
-
-
0027483908
-
AU-rich intronic elements affect pre-mRNA 5′ splice site selection in Drosophila melanogaster
-
McCullough AJ, Schuler MA (1993) AU-rich intronic elements affect pre-mRNA 5′ splice site selection in Drosophila melanogaster. Mol Cell Biol 13:7689-7697
-
(1993)
Mol Cell Biol
, vol.13
, pp. 7689-7697
-
-
McCullough, A.J.1
Schuler, M.A.2
-
45
-
-
0030344885
-
Interactions across exons can influence splice site recognition in plant nuclei
-
McCullough AJ, Baynton CE, Schuler MA (1996) Interactions across exons can influence splice site recognition in plant nuclei. Plant Cell 8:2295-2307
-
(1996)
Plant Cell
, vol.8
, pp. 2295-2307
-
-
McCullough, A.J.1
Baynton, C.E.2
Schuler, M.A.3
-
46
-
-
0030753981
-
Intronic and exonic sequences modulate 5′ splice site selection in plant nuclei
-
McCullough AJ, Schuler MA (1997) Intronic and exonic sequences modulate 5′ splice site selection in plant nuclei. Nucleic Acids Res 25:1071-1077
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1071-1077
-
-
McCullough, A.J.1
Schuler, M.A.2
-
47
-
-
0028410547
-
Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains
-
McNellis TW, von Arnim AG, Araki T, Komeda Y, Misera S, Deng XW (1994) Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains. Plant Cell 6:487-500
-
(1994)
Plant Cell
, vol.6
, pp. 487-500
-
-
McNellis, T.W.1
von Arnim, A.G.2
Araki, T.3
Komeda, Y.4
Misera, S.5
Deng, X.W.6
-
48
-
-
0031260150
-
Internal AU-rich elements modulate activity of two competing 3′ splice sites in plant nuclei
-
Merritt H, McCullough AJ, Schuler MA (1997) Internal AU-rich elements modulate activity of two competing 3′ splice sites in plant nuclei. Plant J 12:937-943
-
(1997)
Plant J
, vol.12
, pp. 937-943
-
-
Merritt, H.1
McCullough, A.J.2
Schuler, M.A.3
-
49
-
-
0001877802
-
Splicing of precursors to messenger RNAs by the spliceosome
-
Gesteland R, Atkins J eds, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp
-
Moore MJ, Query CC, Sharp PA (1993) Splicing of precursors to messenger RNAs by the spliceosome. In: Gesteland R, Atkins J (eds) The RNA World. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp 303-357
-
(1993)
The RNA World
, pp. 303-357
-
-
Moore, M.J.1
Query, C.C.2
Sharp, P.A.3
-
50
-
-
0030826730
-
The role of U5 snRNP in pre-mRNA splicing
-
Newman AJ (1997) The role of U5 snRNP in pre-mRNA splicing. EMBO J 16:5797-5800
-
(1997)
EMBO J
, vol.16
, pp. 5797-5800
-
-
Newman, A.J.1
-
51
-
-
0026605043
-
U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites
-
Newman AJ, Norman C (1992) U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites. Cell 68:743-754
-
(1992)
Cell
, vol.68
, pp. 743-754
-
-
Newman, A.J.1
Norman, C.2
-
52
-
-
0027588789
-
Molecular basis of the ribulose-1,5-bisphosphate carboxylase/oxygenase activase mutation in Arabidopsis thaliana is a guanine-to-adenine transition at the 5′-splice junction of intron 3
-
Orozco BM, McClung CR, Werneke JM, Ogren WL (1993) Molecular basis of the ribulose-1,5-bisphosphate carboxylase/oxygenase activase mutation in Arabidopsis thaliana is a guanine-to-adenine transition at the 5′-splice junction of intron 3. Plant Physiol 102:227-232
-
(1993)
Plant Physiol
, vol.102
, pp. 227-232
-
-
Orozco, B.M.1
McClung, C.R.2
Werneke, J.M.3
Ogren, W.L.4
-
53
-
-
4344577287
-
Mutations in ClpC2/Hsp100 suppress the requirement for FtsH in thylakoid membrane biogenesis
-
Park S, Rodermel SR (2004) Mutations in ClpC2/Hsp100 suppress the requirement for FtsH in thylakoid membrane biogenesis. Proc Natl Acad Sci USA 101:12765-12770
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12765-12770
-
-
Park, S.1
Rodermel, S.R.2
-
54
-
-
0027408848
-
Evidence for an essential non-Watson-Crick interaction between the first and last nucleotides of a nuclear pre-mRNA intron
-
Parker R, Siliciano PG (1993) Evidence for an essential non-Watson-Crick interaction between the first and last nucleotides of a nuclear pre-mRNA intron. Nature 361:660-662
-
(1993)
Nature
, vol.361
, pp. 660-662
-
-
Parker, R.1
Siliciano, P.G.2
-
55
-
-
0345169036
-
Splicing double: Insights from the second spliceosome
-
Patel AA, Steitz JA (2003) Splicing double: insights from the second spliceosome. Nat Rev Mol Cell Biol 4:960-970
-
(2003)
Nat Rev Mol Cell Biol
, vol.4
, pp. 960-970
-
-
Patel, A.A.1
Steitz, J.A.2
-
56
-
-
0028339078
-
DET1, a negative regulator of light-mediated development and gene expression in Arabidopsis, encodes a novel nuclear-localized protein
-
Pepper A, Delaney T, Washburn T, Poole D, Chory J (1994) DET1, a negative regulator of light-mediated development and gene expression in Arabidopsis, encodes a novel nuclear-localized protein. Cell 78:109-116
-
(1994)
Cell
, vol.78
, pp. 109-116
-
-
Pepper, A.1
Delaney, T.2
Washburn, T.3
Poole, D.4
Chory, J.5
-
57
-
-
0028205987
-
Branch nucleophile selection in pre-mRNA splicing: Evidence for the bulged duplex model
-
Query CC, Moore MJ, Sharp PA (1994) Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model. Genes Dev 8:587-597
-
(1994)
Genes Dev
, vol.8
, pp. 587-597
-
-
Query, C.C.1
Moore, M.J.2
Sharp, P.A.3
-
58
-
-
0028646169
-
The interaction between the first and last intron nucleotides in the second step of pre-mRNA splicing is independent of other conserved intron nucleotides
-
Ruis BL, Kivens WJ, Siliciano PG (1994) The interaction between the first and last intron nucleotides in the second step of pre-mRNA splicing is independent of other conserved intron nucleotides. Nucleic Acids Res 22:5190-5195
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 5190-5195
-
-
Ruis, B.L.1
Kivens, W.J.2
Siliciano, P.G.3
-
59
-
-
0021966914
-
Cryptic branch point activation allows accurate in vitro splicing of human β-globin intron mutants
-
Ruskin B, Greene JM, Green MR (1985) Cryptic branch point activation allows accurate in vitro splicing of human β-globin intron mutants. Cell 41:833-844
-
(1985)
Cell
, vol.41
, pp. 833-844
-
-
Ruskin, B.1
Greene, J.M.2
Green, M.R.3
-
60
-
-
0000520650
-
Yeast pre-mRNA splicing
-
Jones EW, Pringle JR, Broach JR eds, Cold Spring Harbor Laboratory Press, pp
-
Rymond BC, Rosbash M (1992) Yeast pre-mRNA splicing. In: Jones EW, Pringle JR, Broach JR (eds) The Molecular and Cellular Biology of the Yeast Saccharomyces: Gene Expression. Cold Spring Harbor Laboratory Press, pp 143-193
-
(1992)
The Molecular and Cellular Biology of the Yeast Saccharomyces: Gene Expression
, pp. 143-193
-
-
Rymond, B.C.1
Rosbash, M.2
-
61
-
-
0032170391
-
Temperature-sensitive splicing in the floral homeotic mutant apetala3-1
-
Sablowski RW, Meyerowitz EM (1998) Temperature-sensitive splicing in the floral homeotic mutant apetala3-1. Plant Cell 10:1453-1463
-
(1998)
Plant Cell
, vol.10
, pp. 1453-1463
-
-
Sablowski, R.W.1
Meyerowitz, E.M.2
-
62
-
-
0029069220
-
Interactions between the terminal bases of mammalian introns are retained in inosine-containing pre-mRNAs
-
Scadden ADJ, Smith CWJ (1995) Interactions between the terminal bases of mammalian introns are retained in inosine-containing pre-mRNAs. EMBO J 14:3236-3246
-
(1995)
EMBO J
, vol.14
, pp. 3236-3246
-
-
Scadden, A.D.J.1
Smith, C.W.J.2
-
65
-
-
0345003719
-
Conserved loop I of U5 small nuclear RNA is dispensable for both catalytic steps of pre-mRNA splicing in HeLa nuclear extracts
-
Segault V, Will CL, Polycarpou-Schwarz M, Mattaj IW, Branlant C, Luhrmann R (1999) Conserved loop I of U5 small nuclear RNA is dispensable for both catalytic steps of pre-mRNA splicing in HeLa nuclear extracts. Mol Cell Biol 19:2782-2790
-
(1999)
Mol Cell Biol
, vol.19
, pp. 2782-2790
-
-
Segault, V.1
Will, C.L.2
Polycarpou-Schwarz, M.3
Mattaj, I.W.4
Branlant, C.5
Luhrmann, R.6
-
66
-
-
33748581324
-
Comprehensive splice-site analysis using comparative genomics
-
Sheth N, Roca X, Hastings ML, Roeder T, Krainer AR, Sachidanandam R (2006) Comprehensive splice-site analysis using comparative genomics. Nucleic Acids Res 34:3955-3967
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3955-3967
-
-
Sheth, N.1
Roca, X.2
Hastings, M.L.3
Roeder, T.4
Krainer, A.R.5
Sachidanandam, R.6
-
67
-
-
0029347059
-
Genetic separation of third and fourth whorl functions of AGAMOUS
-
Sieburth LE, Running MP, Meyerowitz EM (1995) Genetic separation of third and fourth whorl functions of AGAMOUS. Plant Cell 7:1249-1258
-
(1995)
Plant Cell
, vol.7
, pp. 1249-1258
-
-
Sieburth, L.E.1
Running, M.P.2
Meyerowitz, E.M.3
-
68
-
-
0024100924
-
5′ splice site selection in yeast: Genetic alterations in base pairing with U1 reveal additional requirements
-
Siliciano PG, Guthrie C (1988) 5′ splice site selection in yeast: genetic alterations in base pairing with U1 reveal additional requirements. Genes Dev 2:1258-1267
-
(1988)
Genes Dev
, vol.2
, pp. 1258-1267
-
-
Siliciano, P.G.1
Guthrie, C.2
-
69
-
-
0030255869
-
Splicing of precursors to messenger RNA in higher plants: Mechanism, regulation and sub-nuclear organization of the spliceosomal machinery
-
Simpson GG, Filipowicz W (1996) Splicing of precursors to messenger RNA in higher plants: mechanism, regulation and sub-nuclear organization of the spliceosomal machinery. Plant Mol Biol 32:1-41
-
(1996)
Plant Mol Biol
, vol.32
, pp. 1-41
-
-
Simpson, G.G.1
Filipowicz, W.2
-
70
-
-
0030111219
-
Mutation of putative branchpoint consensus sequences in plant introns reduces splicing efficiency
-
Simpson CG, Clark G, Davidson D, Smith P, Brown JWS (1996) Mutation of putative branchpoint consensus sequences in plant introns reduces splicing efficiency. Plant J 9:369-380
-
(1996)
Plant J
, vol.9
, pp. 369-380
-
-
Simpson, C.G.1
Clark, G.2
Davidson, D.3
Smith, P.4
Brown, J.W.S.5
-
71
-
-
0032126732
-
Characterization of exon skipping mutants of the COP1 gene from Arabidopsis
-
Simpson CG, McQuade C, Lyon J, Brown JW (1998) Characterization of exon skipping mutants of the COP1 gene from Arabidopsis. Plant J 15:125-131
-
(1998)
Plant J
, vol.15
, pp. 125-131
-
-
Simpson, C.G.1
McQuade, C.2
Lyon, J.3
Brown, J.W.4
-
72
-
-
0034020655
-
Requirements for mini-exon inclusion in potato invertase mRNAs provides evidence for exon-scanning interactions in plants
-
Simpson CG, Hedley PE, Watters JA, Clark GP, McQuade C, Machray GC, Brown JW (2000) Requirements for mini-exon inclusion in potato invertase mRNAs provides evidence for exon-scanning interactions in plants. RNA 6:422-433
-
(2000)
RNA
, vol.6
, pp. 422-433
-
-
Simpson, C.G.1
Hedley, P.E.2
Watters, J.A.3
Clark, G.P.4
McQuade, C.5
Machray, G.C.6
Brown, J.W.7
-
73
-
-
0036203222
-
Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a miniexon
-
Simpson CG, Thow G, Clark GP, Jennings SN, Watters JA, Brown JW (2002) Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a miniexon. RNA 8:47-56
-
(2002)
RNA
, vol.8
, pp. 47-56
-
-
Simpson, C.G.1
Thow, G.2
Clark, G.P.3
Jennings, S.N.4
Watters, J.A.5
Brown, J.W.6
-
74
-
-
0345874787
-
Dual functionality of a plant U-rich intronic sequence element
-
Simpson CG. Jennings SN, Clark GP, Thow G, Brown JW (2004) Dual functionality of a plant U-rich intronic sequence element. Plant J 37:82-91
-
(2004)
Plant J
, vol.37
, pp. 82-91
-
-
Simpson, C.G.1
Jennings, S.N.2
Clark, G.P.3
Thow, G.4
Brown, J.W.5
-
75
-
-
0027214101
-
Scanning and competition between AGs are involved in 3? splice site selection in mammalian introns
-
Smith CW, Chu TT, Nadal-Ginard B (1993) Scanning and competition between AGs are involved in 3? splice site selection in mammalian introns. Mol Cell Biol 13:4939-4952
-
(1993)
Mol Cell Biol
, vol.13
, pp. 4939-4952
-
-
Smith, C.W.1
Chu, T.T.2
Nadal-Ginard, B.3
-
76
-
-
0024470631
-
Scanning from an independently specified branch point defines the 3′ splice site of mammalian introns
-
Smith CW, Porro EB, Patton JG, Nadal-Ginard B (1989) Scanning from an independently specified branch point defines the 3′ splice site of mammalian introns. Nature 342:243-247
-
(1989)
Nature
, vol.342
, pp. 243-247
-
-
Smith, C.W.1
Porro, E.B.2
Patton, J.G.3
Nadal-Ginard, B.4
-
77
-
-
0029863992
-
A novel spliceosome containing U11, U12, and U5 snRNPs excises a minor class (AT-AC) intron in vitro
-
Tarn W-Y, Steitz JA (1996a) A novel spliceosome containing U11, U12, and U5 snRNPs excises a minor class (AT-AC) intron in vitro. Cell 84:801-811
-
(1996)
Cell
, vol.84
, pp. 801-811
-
-
Tarn, W.-Y.1
Steitz, J.A.2
-
78
-
-
0029763477
-
Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns
-
Tarn W-Y, Steitz JA (1996b) Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. Science 273:1824-1832
-
(1996)
Science
, vol.273
, pp. 1824-1832
-
-
Tarn, W.-Y.1
Steitz, J.A.2
-
79
-
-
0346121812
-
Mutation in the ap2-6 allele causes recognition of a cryptic splice site
-
Wakem MP, Kohalmi SE (2003) Mutation in the ap2-6 allele causes recognition of a cryptic splice site. J Exp Bot 54:2655-2660
-
(2003)
J Exp Bot
, vol.54
, pp. 2655-2660
-
-
Wakem, M.P.1
Kohalmi, S.E.2
-
80
-
-
33646484347
-
Genomewide comparative analysis of alternative splicing in plants
-
Wang BB, Brendel V (2006) Genomewide comparative analysis of alternative splicing in plants. Proc Natl Acad Sci USA 103:7175-7180
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 7175-7180
-
-
Wang, B.B.1
Brendel, V.2
-
81
-
-
0029278793
-
The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene
-
Wang ZY, Zheng FQ, Shen GZ, Gao JP, Snustad DP, Li MG, Zhang JL, Hong MM (1995) The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene. Plant J 7:613-622
-
(1995)
Plant J
, vol.7
, pp. 613-622
-
-
Wang, Z.Y.1
Zheng, F.Q.2
Shen, G.Z.3
Gao, J.P.4
Snustad, D.P.5
Li, M.G.6
Zhang, J.L.7
Hong, M.M.8
-
82
-
-
0024008930
-
Nuclear pre-mRNA processing in plants: Distinct modes of 3′-splice site selection in plants and animals
-
Wiebauer K, Herrero J-J, Filipowicz W (1988) Nuclear pre-mRNA processing in plants: Distinct modes of 3′-splice site selection in plants and animals. Mol Cell Biol 8:2042-2051
-
(1988)
Mol Cell Biol
, vol.8
, pp. 2042-2051
-
-
Wiebauer, K.1
Herrero, J.-J.2
Filipowicz, W.3
-
83
-
-
0036078076
-
Compositional gradients in Gramineae genes
-
Wong GK, Wang J, Tao L, Tan J, Zhang J, Passey DA, Yu J (2002) Compositional gradients in Gramineae genes. Genome Res 12:851-856
-
(2002)
Genome Res
, vol.12
, pp. 851-856
-
-
Wong, G.K.1
Wang, J.2
Tao, L.3
Tan, J.4
Zhang, J.5
Passey, D.A.6
Yu, J.7
-
84
-
-
0027059033
-
Site-specific crosslinking of mammalian U5 snRNP to the 5′ splice site prior to the first step of premessenger RNA splicing
-
Wyatt JR, Sontheimer EJ, Steitz JA (1992) Site-specific crosslinking of mammalian U5 snRNP to the 5′ splice site prior to the first step of premessenger RNA splicing. Genes Dev 6:2542-2553
-
(1992)
Genes Dev
, vol.6
, pp. 2542-2553
-
-
Wyatt, J.R.1
Sontheimer, E.J.2
Steitz, J.A.3
-
85
-
-
0032171143
-
An intragenic suppressor of the Arabidopsis floral organ identity mutant apetala3-1 functions by suppressing defects in splicing
-
Yi J, Jack T (1998) An intragenic suppressor of the Arabidopsis floral organ identity mutant apetala3-1 functions by suppressing defects in splicing. Plant Cell 10:1465-1477
-
(1998)
Plant Cell
, vol.10
, pp. 1465-1477
-
-
Yi, J.1
Jack, T.2
-
86
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
Yu J, Hu S, Wang J et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79-92
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
-
87
-
-
0041660916
-
Identification, characterization and molecular phylogeny of U12-dependent introns in the Arabidopsis thaliana genome
-
Zhu W, Brendel V (2003) Identification, characterization and molecular phylogeny of U12-dependent introns in the Arabidopsis thaliana genome. Nucleic Acids Res 31:4561-4572
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4561-4572
-
-
Zhu, W.1
Brendel, V.2
-
88
-
-
0022550119
-
A compensatory base change in U1 snRNA suppresses a 5′ splice site mutation
-
Zhuang Y, Weiner AM (1986) A compensatory base change in U1 snRNA suppresses a 5′ splice site mutation. Cell 46:827-835
-
(1986)
Cell
, vol.46
, pp. 827-835
-
-
Zhuang, Y.1
Weiner, A.M.2
|