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Volumn 38, Issue 3, 1998, Pages 407-415

Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties

Author keywords

Gene expression; Intron; Rice; Splicing; Waxy

Indexed keywords

ABACA; ALLELE; CULTIVAR; MESSENGER RNA; OPEN READING FRAME; PLANT GENETICS; STARCH SYNTHASE;

EID: 0032189134     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1006021807799     Document Type: Article
Times cited : (97)

References (37)
  • 1
    • 0030267492 scopus 로고    scopus 로고
    • Control of mRNA stability in higher plants
    • Abler ML, Green PJ: Control of mRNA stability in higher plants. Plant Mol Biol 32: 43-61 (1996).
    • (1996) Plant Mol Biol , vol.32 , pp. 43-61
    • Abler, M.L.1    Green, P.J.2
  • 2
    • 0030980792 scopus 로고    scopus 로고
    • Microsatellites and a single nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germplasm
    • Ayres NM, McClung AM, Larkin PD, Bligh HFJ, Jones CA, Park WD: Microsatellites and a single nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germplasm. Theor Appl Genet 94: 773-781 (1997).
    • (1997) Theor Appl Genet , vol.94 , pp. 773-781
    • Ayres, N.M.1    McClung, A.M.2    Larkin, P.D.3    Bligh, H.F.J.4    Jones, C.A.5    Park, W.D.6
  • 3
    • 0029186585 scopus 로고
    • A microsatellite sequence closely linked to the Waxy gene of Oryza sativa
    • Bligh HFJ, Till R, Jones CA: A microsatellite sequence closely linked to the Waxy gene of Oryza sativa. Euphytica 86: 83-85 (1995).
    • (1995) Euphytica , vol.86 , pp. 83-85
    • Bligh, H.F.J.1    Till, R.2    Jones, C.A.3
  • 4
    • 0030295312 scopus 로고    scopus 로고
    • Arabidopsis intron mutations and pre-mRNA splicing
    • Brown JWS: Arabidopsis intron mutations and pre-mRNA splicing. Plant J 10: 771-780 (1996).
    • (1996) Plant J , vol.10 , pp. 771-780
    • Brown, J.W.S.1
  • 5
    • 0028675869 scopus 로고
    • In vivo analysis of intron processing using splicing-dependent reporter gene assays
    • Carle-Urioste JC, Ko CH, Benito M, Walbot V: In vivo analysis of intron processing using splicing-dependent reporter gene assays. Plant Mol Biol 26: 1785-1795 (1994).
    • (1994) Plant Mol Biol , vol.26 , pp. 1785-1795
    • Carle-Urioste, J.C.1    Ko, C.H.2    Benito, M.3    Walbot, V.4
  • 6
    • 0031171283 scopus 로고    scopus 로고
    • A combinatorial role for exon, intron, and splice site sequences in splicing in maize
    • Carle-Urioste JC, Brendel V, Walbot V: A combinatorial role for exon, intron, and splice site sequences in splicing in maize. Plant J 11: 1253-1263 (1997).
    • (1997) Plant J , vol.11 , pp. 1253-1263
    • Carle-Urioste, J.C.1    Brendel, V.2    Walbot, V.3
  • 7
    • 0028260851 scopus 로고
    • Interaction between the first and last nucleotides of pre-mRNA introns is a determinant of 3′ splice site selection in S. cerevisiae
    • Chanfreau G., Legrain P, Dujon B, Jacquier A: Interaction between the first and last nucleotides of pre-mRNA introns is a determinant of 3′ splice site selection in S. cerevisiae. Nucl Acids Res 22: 1981-1987 (1994).
    • (1994) Nucl Acids Res , vol.22 , pp. 1981-1987
    • Chanfreau, G.1    Legrain, P.2    Dujon, B.3    Jacquier, A.4
  • 8
    • 0029158484 scopus 로고
    • Apparent amylose content of milled rice by near-infrared reflectance spectrophotometry
    • Delwiche S, Bean M, Miller R, Webb BD, Williams P: Apparent amylose content of milled rice by near-infrared reflectance spectrophotometry. Cereal Chem 72: 182-187 (1995).
    • (1995) Cereal Chem , vol.72 , pp. 182-187
    • Delwiche, S.1    Bean, M.2    Miller, R.3    Webb, B.D.4    Williams, P.5
  • 9
    • 0029360788 scopus 로고
    • High level tuber expression and sucrose inducibility of a potato Sus4 sucrose synthase gene require 5′ and 3′ flanking sequences and the leader intron
    • Fu H, Kim SY, Park WD: High level tuber expression and sucrose inducibility of a potato Sus4 sucrose synthase gene require 5′ and 3′ flanking sequences and the leader intron. Plant Cell 7: 1387-1394 (1995).
    • (1995) Plant Cell , vol.7 , pp. 1387-1394
    • Fu, H.1    Kim, S.Y.2    Park, W.D.3
  • 10
    • 0030443794 scopus 로고    scopus 로고
    • Translation in plants: Rules and exceptions
    • Futterer J, Hohn T: Translation in plants: rules and exceptions. Plant Mol Biol 32: 159-189 (1996).
    • (1996) Plant Mol Biol , vol.32 , pp. 159-189
    • Futterer, J.1    Hohn, T.2
  • 11
    • 0024967250 scopus 로고
    • The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing
    • Goodall GJ, Filipowicz W: The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing. Cell 58: 473-483 (1989).
    • (1989) Cell , vol.58 , pp. 473-483
    • Goodall, G.J.1    Filipowicz, W.2
  • 12
    • 0025799927 scopus 로고
    • Different effects of intron nucleotide composition and secondary structure on pre-mRNA splicing in monocot and dicot plants
    • Goodall GJ, Filipowicz W: Different effects of intron nucleotide composition and secondary structure on pre-mRNA splicing in monocot and dicot plants. EMBO J 10: 2635-2644 (1991).
    • (1991) EMBO J , vol.10 , pp. 2635-2644
    • Goodall, G.J.1    Filipowicz, W.2
  • 13
    • 0023901907 scopus 로고
    • Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae
    • Hinnebusch AG: Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae. Microbiol Rev 52: 248-273 (1988).
    • (1988) Microbiol Rev , vol.52 , pp. 248-273
    • Hinnebusch, A.G.1
  • 14
    • 0001910904 scopus 로고    scopus 로고
    • Becoming a model plant: The importance of rice to plant science
    • Izawa T, Simoto K: Becoming a model plant: the importance of rice to plant science. Trends Plant Sci 1: 95-99 (1996).
    • (1996) Trends Plant Sci , vol.1 , pp. 95-99
    • Izawa, T.1    Simoto, K.2
  • 15
    • 0029973094 scopus 로고    scopus 로고
    • Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells
    • Jacobson A, Peltz SW: Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells. Annu Rev Biochem 65: 693-739 (1996).
    • (1996) Annu Rev Biochem , vol.65 , pp. 693-739
    • Jacobson, A.1    Peltz, S.W.2
  • 16
    • 0001622583 scopus 로고
    • A simplified assay for milled-rice amylose
    • Juliano BO: A simplified assay for milled-rice amylose. Cereal Sci Today 16: 334-340 (1971).
    • (1971) Cereal Sci Today , vol.16 , pp. 334-340
    • Juliano, B.O.1
  • 17
    • 0004272555 scopus 로고
    • American Association of Cereal Chemists, St Paul, MN
    • Juliano BO: Rice Chemistry and Technology. American Association of Cereal Chemists, St Paul, MN (1985).
    • (1985) Rice Chemistry and Technology
    • Juliano, B.O.1
  • 18
    • 0029822410 scopus 로고    scopus 로고
    • Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences
    • Kleffe J, Hermann K, Vahrson W, Wittig B, Brendel V: Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences. Nucl Acids Res 24: 4709-4718 (1996).
    • (1996) Nucl Acids Res , vol.24 , pp. 4709-4718
    • Kleffe, J.1    Hermann, K.2    Vahrson, W.3    Wittig, B.4    Brendel, V.5
  • 19
    • 0001138243 scopus 로고
    • Genetic analysis of different amylose levels in rice
    • Kumar I, Khush GS: Genetic analysis of different amylose levels in rice. Crop Sci 27: 1167-1172 (1987).
    • (1987) Crop Sci , vol.27 , pp. 1167-1172
    • Kumar, I.1    Khush, G.S.2
  • 20
    • 0141555466 scopus 로고
    • Genetic analysis of waxy locus in rice (Oryza sativa L.)
    • Kumar I, Khush GS: Genetic analysis of waxy locus in rice (Oryza sativa L.). Theor Appl Genet 73: 481-488 (1987).
    • (1987) Theor Appl Genet , vol.73 , pp. 481-488
    • Kumar, I.1    Khush, G.S.2
  • 21
    • 0026100266 scopus 로고
    • Intron enhancement of gene expression and the splicing efficiency of introns in maize cells
    • Leuhrsen KL, Walbot V: Intron enhancement of gene expression and the splicing efficiency of introns in maize cells. Mol Gen Genet 225: 81-93 (1991).
    • (1991) Mol Gen Genet , vol.225 , pp. 81-93
    • Leuhrsen, K.L.1    Walbot, V.2
  • 22
    • 0028813743 scopus 로고
    • Effects of the first intron of rice Waxy gene on the expression of foreign genes in rice and tobacco protoplasts
    • Li Y, Ma H, Zhang J, Wang Z, Hong M: Effects of the first intron of rice Waxy gene on the expression of foreign genes in rice and tobacco protoplasts. Plant Sci 108: 181-190 (1995).
    • (1995) Plant Sci , vol.108 , pp. 181-190
    • Li, Y.1    Ma, H.2    Zhang, J.3    Wang, Z.4    Hong, M.5
  • 23
    • 0027343819 scopus 로고
    • Translation of the mRNA of the maize transcriptional activator Opaque 2 is inhibited by upstream open reading frames present in the leader sequence
    • Lohmer S, Maddaloni M, Motto M, Salamini F, Thompson RD: Translation of the mRNA of the maize transcriptional activator Opaque 2 is inhibited by upstream open reading frames present in the leader sequence. Plant Cell 5: 65-73 (1993).
    • (1993) Plant Cell , vol.5 , pp. 65-73
    • Lohmer, S.1    Maddaloni, M.2    Motto, M.3    Salamini, F.4    Thompson, R.D.5
  • 24
    • 0027406041 scopus 로고
    • Factors affecting authentic 5′ splice site selection in plant nuclei
    • McCullough AJ, Lou H, Schuler MA: Factors affecting authentic 5′ splice site selection in plant nuclei. Mol Cell Biol 13: 1323-1331 (1993).
    • (1993) Mol Cell Biol , vol.13 , pp. 1323-1331
    • McCullough, A.J.1    Lou, H.2    Schuler, M.A.3
  • 25
    • 0027483908 scopus 로고
    • AU-rich intronic elements affect pre-mRNA 5′ splice site selection in Drosophila melanogaster
    • McCullough AJ, Schuler MA: AU-rich intronic elements affect pre-mRNA 5′ splice site selection in Drosophila melanogaster. Mol Cell Biol 13: 7689-7697 (1993).
    • (1993) Mol Cell Biol , vol.13 , pp. 7689-7697
    • McCullough, A.J.1    Schuler, M.A.2
  • 26
    • 0030753981 scopus 로고    scopus 로고
    • Intronic and exonic sequences modulate 5′ splice site selection in plant nuclei
    • McCullough AJ, Schuler MA: Intronic and exonic sequences modulate 5′ splice site selection in plant nuclei. Nucl Acids Res 25: 1071-1077 (1997).
    • (1997) Nucl Acids Res , vol.25 , pp. 1071-1077
    • McCullough, A.J.1    Schuler, M.A.2
  • 27
    • 0026877443 scopus 로고
    • Nucleotide sequence of a long cDNA from the rice waxy gene
    • Okagaki R: Nucleotide sequence of a long cDNA from the rice waxy gene. Plant Mol Biol 19: 513-516 (1992).
    • (1992) Plant Mol Biol , vol.19 , pp. 513-516
    • Okagaki, R.1
  • 28
    • 0027408848 scopus 로고
    • Evidence for an essential non-Watson-Crick interaction between the first and last nucleotides of a nuclear pre-mRNA intron
    • Parker R, Siliciano PG: Evidence for an essential non-Watson-Crick interaction between the first and last nucleotides of a nuclear pre-mRNA intron. Nature 361: 660-662 (1993).
    • (1993) Nature , vol.361 , pp. 660-662
    • Parker, R.1    Siliciano, P.G.2
  • 30
    • 0002348549 scopus 로고
    • Genetic studies of speciation in cultivated rice. 5. inter- and intraspecific differentiation in the Waxy gene expression of rice
    • Sano Y, Katsumata M, Okumo K: Genetic studies of speciation in cultivated rice. 5. inter- and intraspecific differentiation in the Waxy gene expression of rice. Euphytica 35: 1-9 (1986).
    • (1986) Euphytica , vol.35 , pp. 1-9
    • Sano, Y.1    Katsumata, M.2    Okumo, K.3
  • 31
    • 0030255869 scopus 로고    scopus 로고
    • Splicing of precursors to mRNA in higher plants: Mechanism, regulation, and sub-nuclear organisation of the spliceosomal machinery
    • Simpson GJ, Filipowicz W: Splicing of precursors to mRNA in higher plants: mechanism, regulation, and sub-nuclear organisation of the spliceosomal machinery. Plant Mol Biol 32: 1-41 (1996).
    • (1996) Plant Mol Biol , vol.32 , pp. 1-41
    • Simpson, G.J.1    Filipowicz, W.2
  • 32
    • 0024470631 scopus 로고
    • Scanning from an independently specified branchpoint defines the 3′ splice site of mammalian introns
    • Smith CWJ, Porro EB, Patton JG, Nadal-Ginard B: Scanning from an independently specified branchpoint defines the 3′ splice site of mammalian introns. Nature 342: 243-247 (1989).
    • (1989) Nature , vol.342 , pp. 243-247
    • Smith, C.W.J.1    Porro, E.B.2    Patton, J.G.3    Nadal-Ginard, B.4
  • 33
    • 0027214101 scopus 로고
    • Scanning and competition between AG's are involved in 3′ splice site selection in mammalian introns
    • Smith CWJ, Chu TT, Nadal-Ginard B: Scanning and competition between AG's are involved in 3′ splice site selection in mammalian introns. Mol Cell Biol 13: 4939-4952 (1993).
    • (1993) Mol Cell Biol , vol.13 , pp. 4939-4952
    • Smith, C.W.J.1    Chu, T.T.2    Nadal-Ginard, B.3
  • 34
    • 0026541373 scopus 로고
    • Processing of chimeric introns in dicot plants: Evidence for a close cooperation between 5′ and 3′ splice sites
    • Waigmann E, Barta A: Processing of chimeric introns in dicot plants: evidence for a close cooperation between 5′ and 3′ splice sites. Nucl Acids Res 20: 75-81 (1992).
    • (1992) Nucl Acids Res , vol.20 , pp. 75-81
    • Waigmann, E.1    Barta, A.2
  • 35
    • 0029278793 scopus 로고
    • The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene
    • Wang Z, Zheng F, Shen G, Gao J, Snustad P, Li M, Zhang J, Hong M: The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene. Plant J 7: 613-622 (1995).
    • (1995) Plant J , vol.7 , pp. 613-622
    • Wang, Z.1    Zheng, F.2    Shen, G.3    Gao, J.4    Snustad, P.5    Li, M.6    Zhang, J.7    Hong, M.8
  • 36
    • 0037778108 scopus 로고
    • Components of rice quality: Their identification, methodology, and stage of application in United States breeding programs
    • International Rice Research Institute, International Rice Research Institute, Los Baños, Philippines
    • Webb BD, Bollich C, Johnston T, Mcllrath W: Components of rice quality: their identification, methodology, and stage of application in United States breeding programs. In: International Rice Research Institute, Proceedings of the workshop on chemical aspects of rice grain quality, pp. 191-208. International Rice Research Institute, Los Baños, Philippines (1979).
    • (1979) Proceedings of the Workshop on Chemical Aspects of Rice Grain Quality , pp. 191-208
    • Webb, B.D.1    Bollich, C.2    Johnston, T.3    Mcllrath, W.4
  • 37
    • 0000620089 scopus 로고
    • Criteria of rice quality in the United States
    • Juliano BO (ed) American Association of Cereal Chemists, St. Paul, MN
    • Webb BD: Criteria of rice quality in the United States. In: Juliano BO (ed) Rice Chemistry and Technology, pp. 403-442. American Association of Cereal Chemists, St. Paul, MN (1985).
    • (1985) Rice Chemistry and Technology , pp. 403-442
    • Webb, B.D.1


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