-
1
-
-
39849097831
-
RNA polymerase: The vehicle of transcription
-
Borukhov, S. & Nudler, E. (2008). RNA polymerase: the vehicle of transcription. Trends Microbiol 16, 126-134.
-
(2008)
Trends Microbiol
, vol.16
, pp. 126-134
-
-
Borukhov, S.1
Nudler, E.2
-
2
-
-
0027536870
-
Transcript cleavage factors from E. coli
-
Borukhov, S., Sagitov, V. & Goldfarb, A. (1993). Transcript cleavage factors from E. coli. Cell 72, 459-466.
-
(1993)
Cell
, vol.72
, pp. 459-466
-
-
Borukhov, S.1
Sagitov, V.2
Goldfarb, A.3
-
3
-
-
14844329013
-
Bacterial transcription elongation factors: New insights into molecular mechanism of action
-
Borukhov, S., Lee, J. & Laptenko, O. (2005). Bacterial transcription elongation factors: new insights into molecular mechanism of action. Mol Microbiol 55, 1315-1324.
-
(2005)
Mol Microbiol
, vol.55
, pp. 1315-1324
-
-
Borukhov, S.1
Lee, J.2
Laptenko, O.3
-
4
-
-
0032079954
-
Combinatorial effects of NusA and NusG on transcription elongation and Rho-dependent termination in Escherichia coli
-
Burns, C. M., Richardson, L. V. & Richardson, J. P. (1998). Combinatorial effects of NusA and NusG on transcription elongation and Rho-dependent termination in Escherichia coli. J. Mol Biol 278, 307-316.
-
(1998)
J. Mol Biol
, vol.278
, pp. 307-316
-
-
Burns, C.M.1
Richardson, L.V.2
Richardson, J.P.3
-
5
-
-
0346887121
-
The distribution of RNA polymerase in Escherichia coli is dynamic and sensitive to environmental cues
-
Cabcera, J. E. & Jin, D. J. (2003). The distribution of RNA polymerase in Escherichia coli is dynamic and sensitive to environmental cues. Mol Microbiol 50, 1493-1505.
-
(2003)
Mol Microbiol
, vol.50
, pp. 1493-1505
-
-
Cabcera, J.E.1
Jin, D.J.2
-
6
-
-
33750529760
-
Coupling the distribution of RNA polymerase to global gene regulation and the dynamic structure of the bacterial nucleoid in Escherichia coli
-
Cabrera, J. E. & Jin, D. J. (2006). Coupling the distribution of RNA polymerase to global gene regulation and the dynamic structure of the bacterial nucleoid in Escherichia coli. J Struct Biol 156, 284-291.
-
(2006)
J Struct Biol
, vol.156
, pp. 284-291
-
-
Cabrera, J.E.1
Jin, D.J.2
-
7
-
-
33846120515
-
The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli
-
Chatterji, D., Ogawa, Y., Shimada, T. & Ishihama, A. (2007). The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli. FEMS Microbiol Lett 267, 51-55.
-
(2007)
FEMS Microbiol Lett
, vol.267
, pp. 51-55
-
-
Chatterji, D.1
Ogawa, Y.2
Shimada, T.3
Ishihama, A.4
-
8
-
-
0028804889
-
Control of rRNA transcription in Escherichia coli
-
Condon, C., Squires, C. & Squires, C. L. (1995). Control of rRNA transcription in Escherichia coli. Microbiol Rev 59, 623-645.
-
(1995)
Microbiol Rev
, vol.59
, pp. 623-645
-
-
Condon, C.1
Squires, C.2
Squires, C.L.3
-
9
-
-
33645055663
-
Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes
-
Couturier, E. & Rocha, E. P. C. (2006). Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes. Mol Microbiol 59, 1506-1518.
-
(2006)
Mol Microbiol
, vol.59
, pp. 1506-1518
-
-
Couturier, E.1
Rocha, E.P.C.2
-
10
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
Cramer, P., Bushnell, D. A. & Kornberg, R. D. (2001). Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 292, 1863-1876.
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
11
-
-
0037379474
-
Localization of rRNA synthesis in Bacillus subtilis. characterization of loci involved in transcription focus formation
-
Davies, K. M. & Lewis, P. J. (2003). Localization of rRNA synthesis in Bacillus subtilis. characterization of loci involved in transcription focus formation. J Bacteriol 185, 2346-2353.
-
(2003)
J Bacteriol
, vol.185
, pp. 2346-2353
-
-
Davies, K.M.1
Lewis, P.J.2
-
12
-
-
22144442117
-
The NusA: RNA polymerase ratio is increased at sites of rRNA synthesis in Bacillus subtilis
-
Davies, K. M., Dedman, A. J., van Hork, S. & Lewis, P. J. (2005). The NusA: RNA polymerase ratio is increased at sites of rRNA synthesis in Bacillus subtilis. Mol Microbiol 57, 366-379.
-
(2005)
Mol Microbiol
, vol.57
, pp. 366-379
-
-
Davies, K.M.1
Dedman, A.J.2
van Hork, S.3
Lewis, P.J.4
-
13
-
-
33744752145
-
Subcellular partitioning of transcription factors in Bacillus subtilis
-
Doherty, G. P., Meredith, D. H. & Lewis, P. J. (2006). Subcellular partitioning of transcription factors in Bacillus subtilis. J Bacteriol 188, 4101-4110.
-
(2006)
J Bacteriol
, vol.188
, pp. 4101-4110
-
-
Doherty, G.P.1
Meredith, D.H.2
Lewis, P.J.3
-
14
-
-
0027761137
-
Multiple RNA polymerase conformations and GreA control of fidelity of transcription
-
Erie, D. A., Hgaseyedjavadi, O., Young, M. C. & von Hippel, P. H. (1993). Multiple RNA polymerase conformations and GreA control of fidelity of transcription. Science 262, 867-873.
-
(1993)
Science
, vol.262
, pp. 867-873
-
-
Erie, D.A.1
Hgaseyedjavadi, O.2
Young, M.C.3
von Hippel, P.H.4
-
15
-
-
27744509046
-
Assembly of an RNA-protein complex. Binding of NusB and NusE (S10) proteins to boxA RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in Escherichia coli
-
Greive, S. J., Lins, A. F. & von Hippel, P. H. (2005). Assembly of an RNA-protein complex. Binding of NusB and NusE (S10) proteins to boxA RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in Escherichia coli. J Biol Chem 280, 36397-36408.
-
(2005)
J Biol Chem
, vol.280
, pp. 36397-36408
-
-
Greive, S.J.1
Lins, A.F.2
von Hippel, P.H.3
-
16
-
-
0242692671
-
Multiple sigma subunits and the partitioning of bacterial transcription space
-
Gruber, T. M. & Gross, C. A. (2003). Multiple sigma subunits and the partitioning of bacterial transcription space. Annu Rev Microbiol 57, 441-466.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 441-466
-
-
Gruber, T.M.1
Gross, C.A.2
-
17
-
-
0035900642
-
Control of intrinsic transcription termination by N and NusA: The basic mechanisms
-
Gusarov, I. & Nudler, E. (2001). Control of intrinsic transcription termination by N and NusA: the basic mechanisms. Cell 107, 437-449.
-
(2001)
Cell
, vol.107
, pp. 437-449
-
-
Gusarov, I.1
Nudler, E.2
-
18
-
-
39149142997
-
The X-ray crystal structure of RNA polymerase from Archaea
-
Hirata, A., Klein, B. J. & Murakami, K. S. (2008). The X-ray crystal structure of RNA polymerase from Archaea. Nature 451, 851-854.
-
(2008)
Nature
, vol.451
, pp. 851-854
-
-
Hirata, A.1
Klein, B.J.2
Murakami, K.S.3
-
19
-
-
0029614716
-
Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro
-
Hsu, L. M., Vo, N. V. & Chamberlin, M. J. (1995). Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro. Proc Natl Acad Sci U S A 92, 11588-11592.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 11588-11592
-
-
Hsu, L.M.1
Vo, N.V.2
Chamberlin, M.J.3
-
20
-
-
0032904686
-
Autogenous regulation of transcription termination factor Rho and the requirements for Nus factors in Bacillus subtilis
-
Ingham, C. J., Dennis, J. & Furneaux, P. A. (1999). Autogenous regulation of transcription termination factor Rho and the requirements for Nus factors in Bacillus subtilis. Mol Microbiol 31, 651-663.
-
(1999)
Mol Microbiol
, vol.31
, pp. 651-663
-
-
Ingham, C.J.1
Dennis, J.2
Furneaux, P.A.3
-
21
-
-
29144437058
-
Alternative sigma factors and their roles in bacterial virulence
-
Kazmierczak M. J., Wledmann, M. & Boor, K. J. (2005). Alternative sigma factors and their roles in bacterial virulence. Microbiol Mol Biol Rev 69, 527-543.
-
(2005)
Microbiol Mol Biol Rev
, vol.69
, pp. 527-543
-
-
Kazmierczak, M.J.1
Wledmann, M.2
Boor, K.J.3
-
22
-
-
35348831126
-
How gene order is influenced by the biophysics of transcription regulation
-
Kolesov, G., Wunderlich, Z., Laikova, O. N., Mikhail, S., Gelfand, M. S. & Mirny, L. A. (2007). How gene order is influenced by the biophysics of transcription regulation. Proc Natl Acad Sci U S A 104, 13948-13953.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 13948-13953
-
-
Kolesov, G.1
Wunderlich, Z.2
Laikova, O.N.3
Mikhail, S.4
Gelfand, M.S.5
Mirny, L.A.6
-
23
-
-
0032548820
-
Distinct functions of N and C-terminal domains of GreA, an Escherichia coli transcript cleavage factor
-
Koulich, D., Nikiforov, V. & Borukhov, S. (1998). Distinct functions of N and C-terminal domains of GreA, an Escherichia coli transcript cleavage factor. J Mol Biol 276, 379-389.
-
(1998)
J Mol Biol
, vol.276
, pp. 379-389
-
-
Koulich, D.1
Nikiforov, V.2
Borukhov, S.3
-
24
-
-
51149118363
-
-
LandicK R., Turnbough, C., Jr & Yanofsky, C. (1996). Transcription attenuation. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 1263-1286. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
-
LandicK R., Turnbough, C., Jr & Yanofsky, C. (1996). Transcription attenuation. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 1263-1286. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
-
-
-
-
25
-
-
33748926752
-
Stoichiometry and turnover in single, functioning membrane protein complexes
-
Leake, M. C., Chandler, J. H., Wadhams, G. H., Bai, F., Barry, R. M. & Armitage, J. P. (2006). Stoichiometry and turnover in single, functioning membrane protein complexes. Nature 443, 355-358.
-
(2006)
Nature
, vol.443
, pp. 355-358
-
-
Leake, M.C.1
Chandler, J.H.2
Wadhams, G.H.3
Bai, F.4
Barry, R.M.5
Armitage, J.P.6
-
26
-
-
51149088663
-
The organisation of transcription and translation
-
Edited by P. Graumann. Norwich, UK: Horizon Pres
-
Lewis, P. (2007). The organisation of transcription and translation. In Bacillus: Cellular and Molecular Biology, pp. 135-166. Edited by P. Graumann. Norwich, UK: Horizon Pres.
-
(2007)
Bacillus: Cellular and Molecular Biology
, pp. 135-166
-
-
Lewis, P.1
-
27
-
-
0033521857
-
GFP vectors for controlled expression and dual labelling of protein fusions in Bacillus subtilis
-
Lewis, P. J. & Marston, A. L. (1999). GFP vectors for controlled expression and dual labelling of protein fusions in Bacillus subtilis. Gene 227, 101-109.
-
(1999)
Gene
, vol.227
, pp. 101-109
-
-
Lewis, P.J.1
Marston, A.L.2
-
28
-
-
0034651795
-
Compartmentalization of transcription and translation in Bacillus subtilis
-
Lewis, P. J., Thaker, S. D. & Errington, J. (2000). Compartmentalization of transcription and translation in Bacillus subtilis. EMBO J 19, 710-718.
-
(2000)
EMBO J
, vol.19
, pp. 710-718
-
-
Lewis, P.J.1
Thaker, S.D.2
Errington, J.3
-
29
-
-
12044255564
-
Elongation factor NusG interacts with termination factor Rho to regulate termination and antitermination of transcription
-
Li, J., Mason, S. W. & Greenblatt, J. (1993). Elongation factor NusG interacts with termination factor Rho to regulate termination and antitermination of transcription. Genes Dev 7, 161-172.
-
(1993)
Genes Dev
, vol.7
, pp. 161-172
-
-
Li, J.1
Mason, S.W.2
Greenblatt, J.3
-
30
-
-
0035970037
-
Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly
-
Minakhin, L., Bhagat, S., Brunning, A., Campbell, E. A., Darst, S. A., Ebright, R. H. & Severinov, K. (2001). Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly. Proc Natl Acad Sci U S A 98, 892-897.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 892-897
-
-
Minakhin, L.1
Bhagat, S.2
Brunning, A.3
Campbell, E.A.4
Darst, S.A.5
Ebright, R.H.6
Severinov, K.7
-
31
-
-
0033571313
-
GroEL is involved in activation of Escherichia coli RNA polymerase devoid of the omega subunit in vivo
-
Mukherjee, K., Nagai, H., Shimamoto, N. & Chatterji, D. (1999). GroEL is involved in activation of Escherichia coli RNA polymerase devoid of the omega subunit in vivo. Eur J Biochem 266, 228-235.
-
(1999)
Eur J Biochem
, vol.266
, pp. 228-235
-
-
Mukherjee, K.1
Nagai, H.2
Shimamoto, N.3
Chatterji, D.4
-
32
-
-
0043244877
-
Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase
-
Opalka, N., Chlenov, M., Chacon, P., Rice, W. J., Wriggers, W. & Darst, S. A. (2003). Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase. Cell 114, 335-345.
-
(2003)
Cell
, vol.114
, pp. 335-345
-
-
Opalka, N.1
Chlenov, M.2
Chacon, P.3
Rice, W.J.4
Wriggers, W.5
Darst, S.A.6
-
33
-
-
0029015817
-
Intrinsic transcript cleavage activity of RNA polymerase
-
Orlova, M., Newlands, J., Das, A., Goldfarb, A. & Borukhov, S. (1995). Intrinsic transcript cleavage activity of RNA polymerase. Proc Natl Acad Sci U S A 92, 4596-4600.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 4596-4600
-
-
Orlova, M.1
Newlands, J.2
Das, A.3
Goldfarb, A.4
Borukhov, S.5
-
34
-
-
0034625124
-
Regulation of Rho-dependent transcription termination by NusG is specific to the Escherichia coli elongation complex
-
Pasman, Z. & von Hippel, P. H. (2000). Regulation of Rho-dependent transcription termination by NusG is specific to the Escherichia coli elongation complex. Biochemistry 39, 5573-5585.
-
(2000)
Biochemistry
, vol.39
, pp. 5573-5585
-
-
Pasman, Z.1
von Hippel, P.H.2
-
35
-
-
33744962968
-
Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by Gre-A and DksA
-
Potrykus, K., Vinella, D., Murphy, H., Szalweska-Palasz, A., D'Ari, R. & Cashel, M. (2006). Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by Gre-A and DksA. J Biol Chem 281, 15238-15248.
-
(2006)
J Biol Chem
, vol.281
, pp. 15238-15248
-
-
Potrykus, K.1
Vinella, D.2
Murphy, H.3
Szalweska-Palasz, A.4
D'Ari, R.5
Cashel, M.6
-
36
-
-
41149121779
-
Independent positioning and action of Escherichia coli replisomes in live cells
-
Reyes-Lamothe, R., Possoz, C., Danilova, O. & Sherratt, D. J. (2008). Independent positioning and action of Escherichia coli replisomes in live cells. Cell 133, 90-102.
-
(2008)
Cell
, vol.133
, pp. 90-102
-
-
Reyes-Lamothe, R.1
Possoz, C.2
Danilova, O.3
Sherratt, D.J.4
-
37
-
-
51149084669
-
-
Richardson, J. P. & Greenblatt, J. (1996). Control of RNA chain elongation and termination. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 822-848. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
-
Richardson, J. P. & Greenblatt, J. (1996). Control of RNA chain elongation and termination. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 822-848. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
-
-
-
-
38
-
-
37449029179
-
Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
-
Stepanova, E., Lee, J., Ozerova, M., Semenova, E., Datsenko, K., Wanner, B. L., Severinov, K. & Borukhov, S. (2007). Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro. J Bacteriol 189, 8772-8785.
-
(2007)
J Bacteriol
, vol.189
, pp. 8772-8785
-
-
Stepanova, E.1
Lee, J.2
Ozerova, M.3
Semenova, E.4
Datsenko, K.5
Wanner, B.L.6
Severinov, K.7
Borukhov, S.8
-
39
-
-
1342325469
-
In vivo effect of NusB and NusG on rRNA transcription antitermination
-
Torres, M., Balada, J.-M., Zellars, M., Squires, C. & Squires, C. L. (2004). In vivo effect of NusB and NusG on rRNA transcription antitermination. J Bacteriol 186, 1304-1310.
-
(2004)
J Bacteriol
, vol.186
, pp. 1304-1310
-
-
Torres, M.1
Balada, J.-M.2
Zellars, M.3
Squires, C.4
Squires, C.L.5
-
40
-
-
0028227702
-
The RNA chain elongation rate in Escherichia coli depends on the growth rate
-
Vogel, U. & Jensen, K. F. (1994). The RNA chain elongation rate in Escherichia coli depends on the growth rate. J Bacteriol 176, 2807-2813.
-
(1994)
J Bacteriol
, vol.176
, pp. 2807-2813
-
-
Vogel, U.1
Jensen, K.F.2
-
41
-
-
25844499174
-
Response of RNA polymerase to ppGpp: Requirement for the omega subunit and relief of this requirement by DksA
-
Vrentas, C. E., Gaal, T., Ross, W., Ebright, P. H. & Gourse, R. L. (2005). Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA. Genes Dev 19, 2378-2387.
-
(2005)
Genes Dev
, vol.19
, pp. 2378-2387
-
-
Vrentas, C.E.1
Gaal, T.2
Ross, W.3
Ebright, P.H.4
Gourse, R.L.5
-
42
-
-
0033032384
-
Antiterminator-dependent modulation of transcription elongation rates by NusB and NusG
-
Zellars, M. & Squires, C. L. (1999). Antiterminator-dependent modulation of transcription elongation rates by NusB and NusG. Mol Microbiol 32, 1296-1304.
-
(1999)
Mol Microbiol
, vol.32
, pp. 1296-1304
-
-
Zellars, M.1
Squires, C.L.2
-
43
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution
-
Zhang, G., Campbell, E. A., Minakhin, L., Richter, C., Severinov, K. & Darst, S. A. (1999). Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution. Cell 98, 811-824.
-
(1999)
Cell
, vol.98
, pp. 811-824
-
-
Zhang, G.1
Campbell, E.A.2
Minakhin, L.3
Richter, C.4
Severinov, K.5
Darst, S.A.6
|