Nsf1/Ypl230w participates in transcriptional activation during non-fermentative growth and in response to salt stress in Saccharomyces cerevisiae

Microbiology

Volumn 154, Issue 8, 2008, Pages 2482-2491

  Hlynialuk, Chris ^a   Schierholtz, Ryan ^a   Vernooy, Amanda ^a   van der Merwe, George ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; FUNGAL PROTEIN; MUTANT PROTEIN; NUTRIENT AND STRESS FACTOR 1; PROTEIN ACS1; PROTEIN CIT2; PROTEIN ENA1; PROTEIN IDH1; SACCHAROMYCES CEREVISIAE PROTEIN; SODIUM CHLORIDE;

ARTICLE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; FERMENTATION; FUNGUS GROWTH; GENE ACTIVATION; GENE INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; SACCHAROMYCES CEREVISIAE; SALT STRESS; TRANSCRIPTION INITIATION;

ADENOSINE TRIPHOSPHATASES; CARBON; CATION TRANSPORT PROTEINS; CELL NUCLEUS; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; PROTEIN TRANSPORT; PROTEIN-SERINE-THREONINE KINASES; QA-SNARE PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SODIUM CHLORIDE; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION FACTORS;

SACCHAROMYCES CEREVISIAE;

EID: 51149090340     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2008/019976-0     Document Type: Article

References (50)

1. Alepuz, P. M., Cunningham, K. W. & Estruch, F. (1997). Glucose repression affects ion homeostasis in yeast through the regulation of the stress-activated ENA1 gene. Mol Microbiol 26, 91-98.
2. Ausubel, F. M., Brent R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (2002). Short Protocols in Molecular Biology, 5th edn. New York: Wiley.
3. Berkey, C. D., Vyas, V. K. & Carlson, M. (2004). Nrg1 and Nrg2 transcriptional repressors are differently regulated in response to carbon source. Eukaryot Cell 3, 311-317.
4. 2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 25, 2464-2469.
5. Boulton, R. B., Singleton, V. L., Bisson, L. F. & Kunkee, R. E. (1998). Principles and Practices of Winemaking. New York: Springer.
6. Carlson, M. (1999). Glucose repression in yeast. Curr Opin Microbiol 2, 202-207.
7. Cheng, C., Kacherovsky, N., Dombek, K. M., Camier, S., Thukral, S. K., Rhim, E. & Young, E. T. (1994). Identification of potential target genes for Adr1p through characterization of essential nucleotides in UAS1. Mol Cell Biol 14, 3842-3852.
8. Crespo, J. L., Daicho, K, Ushimaru, T. & Hall, M. N. (2001). The GATA transcription factors GLN3 and GAT1 link TOR to salt stress in Saccharomyces cerevisiae. J Biol Chem 276, 34441-34444.
9. 2+ ATPases in Saccharomyces cerevisiae. Mol Cell Biol 16, 2226-2237.
10. Cyert, M. S. (2003). Calcineurin signaling in Saccharomyces cerevisiae. how yeast go crazy in response to stress. Biochem Biophys Res Commun 311, 1143-1150.
11. De Vit M. J., Waddle, J. A. & Johnston, M. (1997). Regulated nuclear translocation of the Mig1 glucose repressor. Mol Biol Cell 8, 1603-1618.
12. DeVit M. J. & Johnston, M. (1999). The nuclear exportin Msn5 is required for nuclear export of the Mig1 glucose repressor of Saccharomyces cerevisiae. Curr Biol 9, 1231-1241.
13. Gancedo, J. M. (1998). Yeast carbon catabolite repression. Microbiol Mol Biol Rev 62, 334-361.
14. Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O., Eisen, M. B., Storz, G., Botstein, D. & Brown, P. O. (2000). Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11, 4241-4257.
15. Haro, R., Garciadeblas, B. & Rodriguez-Navarro, A. (1991). A novel P-type ATPase from yeast involved in sodium transport. FEBS Lett 291, 189-191.
16. Haurie, V., Perrot, M., Mini, T., Jeno, P., Sagliocco, F. & Boucherie, H. (2001). The transcriptional activator Cat8p provides a major contribution to the reprogramming of carbon metabolism during the diauxic shift in Saccharomyces cerevisiae. J Biol Chem 276, 76-85.
17. Hedges, D., Proft, M. & Entian, K. D. (1995). CAT8, a new zinc cluster-encoding gene necessary for derepression of gluconeogenic enzymes in the yeast Saccharomyces cerevisiae. Mol Cell Biol 15, 1915-1922.
18. Jiang, R. & Carlson, M. (1996). Glucose regulates protein interactions within the yeast SNF1 protein kinase complex. Genes Dev 10, 3105-3115.
19. Klein, C. J., Olsson, L. & Nielsen, J. (1998). Glucose control in Saccharomyces cerevisiae: the role of Mig1 in metabolic functions. Microbiology 144, 13-24.
20. Kuchin, S., Vyas, V. K. & Carlson, M. (2002). Snf1 protein kinase and the repressors Nrg1 and Nrg2 regulate FLO11, haploid invasive growth, and diploid pseudohyphal differentiation. Mol Cell Biol 22, 3994-4000.
21. Lamb, T. M. & Mitchell, A. P. (2003). The transcription factor Rim101p governs ion tolerance and cell differentiation by direct repression of the regulatory genes NRG1 and SMP1 in Saccharomyces cerevisiae. Mol Cell Biol 23, 677-686.
22. Lamb, T. M., Xu, W., Diamond, A. & Mitchell, A. P. (2001). Alkaline response genes of Saccharomyces cerevisiae and their relationship to the RIM101 pathway. J Biol Chem 276, 1850-1856.
23. Longtine, M. S., McKenzie, A., III, Demarini, D. J., Shah, N. G., Wach, A., Brachat, A., Philippsen, P. & Pringle, J. R. (1998). Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14, 953-961.
24. Lutfiyya, L. L., Iyer, V. R., DeRisi, J., DeVit M. J., Brown, P. O. & Johnston, M. (1998). Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae. Genetics 150, 1377-1391.
25. Marks, V. D., Ho Sui, S. J., Erasmus, D., van der Merwe, G. K., Brumm, J., Wasserman, W. W., Bryan, J. & van Vuuren, H. J. J. (2008). Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response. FEMS Yeast Res 8, 35-52.
26. McCartney, R. R. & Schmidt, M. C. (2001). Regulation of Snf1 kinase. Activation requires pbosphorylation of threonine 210 by an upstream kinase as well as a distinct step mediated by the Snf4 subunit. J Biol Chem 276, 36460-36466.
27. Mercado, J. J., Vincent, O. & Gancedo, J. M. (1991). Regions in the promoter of the yeast FBP1 gene implicated in catabolite repression may bind the product of the regulatory gene MIG1. FEBS Lett 291, 97-100.
28. Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor) NY: Cold Spring Harbor Laboratory.
29. Paiva, S., Devaux, F., Barbosa, S., Jacq, C. & Casal, M. (2004). Ady2p is essential for the acetate permease activity in the yeast Saccharomyces cerevisiae. Yeast 21, 201-210.
30. Park, S. H., Koh, S. S., Chun, J. H., Hwang, H. J. & Kang, H. S. (1999). Nrg1 is a transcriptional repressor for glucose repression of STA1 gene expression in Saccharomyces cerevisiae. Mol Cell Biol 19, 2044-2050.
31. +-ATPase ENA1 gene to alkaline stress involves three main signaling pathways. J Biol Chem 281, 36632-36642.
32. Rossignol, T., Dulau, L., Julien, A. & Blondin, B. (2003). Genome-wide monitoring of wine yeast gene expression during alcoholic fermentation. Yeast 20, 1369-1385.
33. Ruiz, A. & Arino, J. (2007). Function and regulation of the Saccharomyces cerevisiae ENA sodium ATPase system. Eukaryot Cell 6, 2175-2183.
34. Sanz, P., Alms, G. R, Haystead, T. A. & Carlson, M. (2000a). Regulatory interactions between the Regl-Glc7 protein phosphatase and the Snfl protein kinase. Mol Cell Biol 20, 1321-1328.
35. Sanz, P., Ludin, K. & Carlson, M. (2000b). Sip5 interacts with both the Reg1/Glc7 protein phosphatase and the Snfl protein kinase of Saccharomyces cerevisiae. Genetics 154, 99-107.
36. Scholer, A. & Schuller, H. J. (1993). Structure and regulation of the isocitrate lyase gene ICL1 from the yeast Saccharomyces cerevisiae. Curr Genet 23, 375-381.
37. Schuller, H. J. (2003). Transcriptional control of nonfermentative metabolism in the yeast Saccharomyces cerevisiae. Curr Genet 43, 139-160.
38. Stathopoulos, A. M. & Cyert. M. S. (1997). Calcineurin acts through the CRZ1/TCN1-encoded transcription factor to regulate gene expression in yeast. Genes Dev 11, 3432-3444.
39. Strub, B. R., Eswara, M. B., Pierce, J. B. & Mangroo, D. (2007). Utp8p is a nucleolar tRNA-binding protein that forms a complex with components of the nuclear tRNA export machinery in Saccharomyces cerevisiae. Mol Biol Cell 18, 3845-3859.
40. Tachibana, C, Yoo, J. Y., Tagne, J. B., Kacherovsky, N., Lee, T. I. & Young, E. T. (2005). Combined global localization analysis and transcriptome data identify genes that are directly coregulated by Adr1 and Cat8. Mol Cell Biol 25, 2138-2146.
41. Titz, B., Thomas, S., Rajagopala, S. V., Chiba, T., Ito, T. & Uetz, P. (2006). Transcriptional activators in yeast. Nucleic Acids Res 34, 955-967.
42. Treitel, M. A., Kuchin, S. & Carlson, M. (1998). Snfl protein kinase regulates phosphorylation of the Migl repressor in Saccharomyces cerevisiae. Mol Cell Biol 18, 6273-6280.
43. van der Merwe, G. K, Cooper, T. G. & van Vuuren, H. J. (2001a). Ammonia regulates VID30 expression and Vid30p function shifts nitrogen metabolism toward glutamate formation especially when Saccharomyces cerevisiae is grown in low concentrations of ammonia. J Biol Chem 276, 28659-28666.
44. van der Merwe, G. K., van Vuuren, H. J. & Cooper, T. G. (2001b). Cis-acting sites contributing to expression of divergently transcribed DAL1 and DAL4 genes in S. cerevisiae: a word of caution when correlating cis-acting sequences with genome-wide expression analyses. Curr Genet 39, 156-165.
45. Vyas, V. K., Kuchin, S. & Carlson, M. (2001). Interaction of the repressors Nrg1 and Nrg2 with the Snf1 protein kinase in Saccharomyces cerevisiae. Genetics 158, 563-572.
46. Vyas, V. K., Berkey, C. D., Miyao, T. & Carlson, M. (2005). Repressors Nrg1 and Nrg2 regulate a set of stress-responsive genes in Saccharomyces cerevisiae. Eukaryot Cell 4, 1882-1891.
47. Yoshimoto, H., Saltsman, V, Gasch, A. P., Li, H. X., Ogawa, N., Botstein, D., Brown, P. O. & Cyert, M. S. (2002). Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae. J Biol Chem 277, 31079-31088.
48. Young, E. T., Kacherovsky, N. & Van Riper, K. (2002). Snf1 protein kinase regulates Adr1 binding to chromatin but not transcription activation. J Biol Chem 277, 38095-38103.
49. Young, E. T., Dombek, K. M., Tachibana, C. & Ideker, T. (2003). Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8. J Biol Chem 278, 26146-26158.
50. Zhou, H. & Winston, F. (2001). NRG1 is required for glucose repression of the SUC2 and GAL genes of Saccharomyces cerevisiae. BMC Genet 2, 5.