Transcriptional analysis of the queD gene coding for quercetinase of Streptomyces sp. FLA

FEMS Microbiology Letters

Volumn 287, Issue 1, 2008, Pages 100-107

  Merkens, Hedda ^a   Fetzner, Susanne ^a  

^a UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

Dioxygenase; Flavonol; Quercetin; Quercetinase; Rutin; Transcriptional regulation

Indexed keywords

AMIDASE; BACTERIAL ENZYME; CARBON; ESTERASE; GLUCOSE; HYDROXYBENZOIC ACID DERIVATIVE; NICKEL; PROTOCATECHUIC ACID; QUERCETIN; QUERCETINASE; RHAMNOSE; RNA; RUTOSIDE DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BINDING SITE; GENE EXPRESSION; GENETIC TRANSCRIPTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PREDICTION; PRIORITY JOURNAL; PROMOTER REGION; QUED GENE; REPRESSOR GENE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA HYBRIDIZATION; SEQUENCE ANALYSIS; STREPTOMYCES;

BACTERIAL PROTEINS; BASE SEQUENCE; DIOXYGENASES; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; IONS; METALS; MOLECULAR SEQUENCE DATA; OPERON; PROMOTER REGIONS, GENETIC; SEQUENCE ALIGNMENT; STREPTOMYCES; TRANSCRIPTION INITIATION SITE;

STREPTOMYCES; STREPTOMYCES SP.;

EID: 50949120878     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2008.01296.x     Document Type: Article

References (39)

1. Abbas A Edwards C (1989) Effects of metals on a range of Streptomyces species. Appl Environ Microbiol 55 : 2030 2035.
2. Abbas AS Edwards C (1990) Effects of metals on Streptomyces coelicolor growth and actinorhodin production. Appl Environ Microbiol 56 : 675 680.
3. Barney BM, Schaab MR, LoBrutto R Francisco WA (2004) Evidence for a new metal in a known active site: purification and characterization of an iron-containing quercetin 2,3-dioxygenase from Bacillus subtilis. Protein Expr Purif 35 : 131 141.
4. Bowater L, Fairhurst SA, Just VJ Bornemann S (2004) Bacillus subtilis YxaG is a novel Fe-containing quercetin 2,3-dioxygenase. FEBS Lett 557 : 45 48.
5. Cushnie TPT Lamb AJ (2005) Antimicrobial activity of flavonoids. Int J Antimicrob Agents 26 : 343 356.
6. Dai Y, Wensink PC Abeles RH (1999) One protein, two enzymes. J Biol Chem 274 : 1193 1195.
7. Dunwell JM, Purvis A Khuri S (2004) Cupins: the most functionally diverse protein superfamily? Phytochemistry 65 : 7 17.
8. Escandar GM Sala LF (1991) Complexing behavior of rutin and quercetin. Can J Chem 69 : 1994 2001.
9. Fusetti F, Schröter KH, Steiner RA, van Noort PI, Pijning T, Rozeboom HJ, Kalk KH, Egmond MR Dijkstra BW (2002) Crystal structure of the copper-containing quercetin 2,3-dioxygenase from Aspergillus japonicus. Structure 10 : 259 268.
10. Gopal B, Madan LL, Betz SF Kossiakoff AA (2005) The crystal structure of a quercetin 2,3-dioxygenase from Bacillus subtilis suggests modulation of enzyme activity by a change in the metal ion at the active site(s). Biochemistry 44 : 193 201.
11. Hartwig UA, Joseph CM Phillips DA (1991) Flavonoids released naturally from Alfalfa seeds enhance growth rate of Rhizobium meliloti. Plant Physiol 95 : 797 803.
12. Hirooka K, Kunikane S, Matsuoka H, Yoshida K-I, Kumamoto K, Tojo S Fujita Y (2007) Dual regulation of the Bacillus subtilis regulon comprising the lmrAB and yxaGH operons and yxaF gene by two transcriptional repressors, LmrA and YxaF, in response to flavonoids. J Bacteriol 189 : 5170 5182.
13. II-containing glycoprotein. Eur J Biochem 263 : 871 878.
14. Iwashina T (2000) The structure and distribution of the flavonoids in plants. J Plant Res 113 : 287 299.
15. Jiang P, Burczynski F, Campbell C, Pierce G, Austria JA Briggs CJ (2007) Rutin and flavonoid contents in three buckwheat species Fagopyrum esculentum, F. tataricum, and F. homotropicum and their protective effects against lipid peroxidation. Food Res Int 40 : 356 364.
16. Kalinova J, Vrchotova N Triska J (2007) Exudation of allelopathic substances in buckwheat (Fagopyrum esculentum Moench). J Agric Food Chem 55 : 6453 6459.
17. Kieser T, Mervyn JB, Buttner MJ, Chater KF Hopwood DA (2000) Practical Streptomyces Genetics. John Innes Foundation, Norwich, UK.
18. Kooter IM, Steiner RA, Dijkstra BW, van Noort PI, Egmond MR Huber M (2002) EPR characterization of the mononuclear Cu-containing Aspergillus japonicus quercetin 2,3-dioxygenase reveals dramatic changes upon anaerobic binding of substrates. Eur J Biochem 269 : 2971 2979.
19. Merkens H, Sielker S, Rose K Fetzner S (2007) A new monocupin quercetinase of Streptomyces sp. FLA: identification and heterologous expression of the queD gene and activity of the recombinant enzyme towards different flavonols. Arch Microbiol 187 : 475 487.
20. Morgenstern B (1999) DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15 : 211 218.
21. Morgenstern B, Frech K, Dress A Werner T (1998) DIALIGN: finding local similarities by multiple sequence alignment. Bioinformatics 14 : 290 294.
22. Oka T Simpson FJ (1971) Quercetinase, a dioxygenase containing copper. Biochem Biophys Res Commun 43 : 1 5.
23. Oka T, Simpson FJ, Child JJ Mills C (1971) Degradation of rutin by Aspergillus flavus. Purification of the dioxygenase, quercetinase. Can J Microbiol 17 : 111 118.
24. Pfennig N (1974) Rhodopseudomonas globiformis sp. n., a new species of the Rhodospirillaceae. Arch Microbiol 100 : 197 206.
25. Plaper A, Golob M, Hafner I, Oblak M, Šolmajer T Jerala R (2003) Characterization of quercetin binding site on DNA gyrase. Biochem Biophys Res Commun 306 : 530 536.
26. Pochapsky TC, Pochapsky SS, Ju T, Mo H, Al-Mjeni F Maroney MJ (2002) Modeling and experiment yields the structure of acireductone dioxygenase from Klebsiella pneumoniae. Nat Struct Biol 9 : 966 972.
27. Rao JR Cooper JE (1994) Rhizobia catabolize nod gene-inducing flavonoids via C-ring fission mechanisms. J Bacteriol 176 : 5409 5413.
28. Schaab MR, Barney BM Francisco WA (2006) Kinetic and spectroscopic studies on the quercetin 2,3-dioxygenase from Bacillus subtilis. Biochemistry 45 : 1009 1016.
29. Schlegel HG, Kaltwasser H Gottschalk G (1961) A submersion method for culture of hydrogen-oxidizing bacteria: growth physiological studies. Arch Mikrobiol 38 : 209 222.
30. Schneider H Blaut M (2000) Anaerobic degradation of flavonoids by Eubacterium ramulus. Arch Microbiol 173 : 71 75.
31. Schultz E, Engle FE Wood JM (1974) New oxygenases in the degradation of flavones and flavanones by Pseudomonas putida. Biochemistry 13 : 1768 1776.
32. Stevens JF, Wollenweber E, Ivancic M, Hsu VL, Sundberg S Deinzer ML (1999) Leaf surface flavonoids of Chrysothamnus. Phytochemistry 51 : 771 780.
33. Strohl WR (1992) Compilation and analysis of DNA sequences associated with apparent streptomycete promoters. Nucleic Acids Res 20 : 961 974.
34. Terán W, Krell T, Ramos JL Gallegos MT (2006) Effector-repressor interactions, binding of a single effector molecule to the operator-bound TtgR homodimer mediates derepression. J Biol Chem 281 : 7102 7109.
35. Tranchimand S, Tron T, Gaudin C Iacazio G (2005) Evaluation of phenolics and sugars as inducers of quercetinase activity in Penicillium olsonii. FEMS Microbiol Lett 253 : 289 294.
36. Tranchimand S, Ertel G, Gaydou V, Gaudin C, Tron T Iacazio G (2008) Biochemical and molecular characterization of a quercetinase from Penicillium olsonii. Biochimie 90 : 781 789.
37. Westlake DWS, Talbot G, Blakley ER Simpson FJ (1959) Microbial decomposition of rutin. Can J Microbiol 5 : 621 629.
38. Westlake DWS, Roxburgh JM Talbot G (1961) Microbial production of carbon monoxide from flavonoids. Nature 189 : 510 511.
39. Yoshida K-I, Ishio I, Nagakawa E, Yamamoto Y, Yamamoto M Fujita Y (2000) Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome. Microbiology 146 : 573 579.