Structure of Thaumatin-like protein was predicted and analysis by bioinformatics methods

2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008

Volumn , Issue , 2008, Pages 88-92

  Shi, Ming Wang ^a   Wang, Biao Zhong ^b   Cheng, Xi Ling ^a   Wang, Jian Hua ^a   Yangrui, ^a   Liu, Qi Li ^a  

^a HENAN INSTITUTE OF SCIENCE AND TECHNOLOGY   (China)

^b NANJING UNIVERSITY   (China)

Author keywords

Bioinformatics; Plant; Thaumatin like protein(TLP)

Indexed keywords

ACTIVATION ANALYSIS; BIOMEDICAL ENGINEERING; CLONING; FORECASTING; INFORMATION SCIENCE; MECHANISMS; NUCLEIC ACIDS; ORGANIC ACIDS;

PLANT; THAUMATIN; THAUMATIN-LIKE PROTEIN(TLP);

BIOINFORMATICS;

EID: 50949098941     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICBBE.2008.28     Document Type: Conference Paper

References (18)

1. Serrano, R. L., Kuhn, A., Hendricks, A., et al. Structural analysis of the human Golgi-associated plant pathogenesis related protein GAPR-1 implicates dimerization as a regulatory mechanism. J Mol Biol, 2004. 339 (1):173-83.
2. Dukka, B. K., Tomita, E., Suzuki, J., et al. Protein threading with profiles and distance constraints using clique based algorithms. J Bioinform Comput Biol, 2006. 4 (1):19-42.
3. Hu, X., Reddy, A. S. Nucleotide sequence of a cDNA clone encoding a thaumatin-like protein from Arabidopsis. Plant Physiol, 1995. 107 (1):305-6.
4. Hu, X., Reddy, A. S. Cloning and expression of a PR5-like protein from Arabidopsis: inhibition of fungal growth by bacterially expressed protein. Plant Mol Biol, 1997. 34 (6):949-59.
5. Koiwa, H., Kato, H., Nakatsu, T., et al. Purification and characterization of tobacco pathogenesis-related protein PR-5d, an antifungal thaumatin-like protein. Plant Cell Physiol, 1997. 38 (7):783-91.
6. Huynh, Q. K., Borgmeyer, J. R., Zobel, J. F. Isolation and characterization of a 22 kDa protein with antifungal properties from maize seeds. Biochem Biophys Res Commun, 1992. 182 (1):1-5.
7. Hejgaard, J., Jacobsen, S., Svendsen, I. Two antifungal thaumatin-like proteins from barley grain. FEBS Lett, 1991. 291 (1):127-31.
8. Singh, N. K., Bracker, C. A., Hasegawa, P. M., et al. Characterization of Osmotin : A Thaumatin-Like Protein Associated with Osmotic Adaptation in Plant Cells. Plant Physiol, 1987. 85 (2):529-536.
9. Jami, S. K., Swathi Anuradha, T., Guruprasad, L., et al. Molecular, biochemical and structural characterization of osmotin-like protein from black nightshade (Solanum nigrum). J Plant Physiol, 2007. 164 (3):238-52.
10. Capelli, N., Diogon, T., Greppin, H., et al. Isolation and characterization of a cDNA clone encoding an osmotin-like protein from Arabidopsis thaliana. Gene, 1997. 191 (1):51-6.
11. Cheong, N. E., Choi, Y. O., Kim, W. Y., et al. Purification and characterization of an antifungal PR-5 protein from pumpkin leaves. Mol Cells, 1997. 7 (2):214-9.
12. Ye, X. Y., Wang, H. X., Ng, T. B. First chromatographic isolation of an antifungal thaumatin-like protein from French bean legumes and demonstration of its antifungal activity. Biochem Biophys Res Commun, 1999. 263 (1):130-4.
13. Terras, F. R., Torrekens, S., Van Leuven, F., et al. A new family of basic cysteine-rich plant antifungal proteins from Brassicaceae species. FEBS Lett, 1993. 316 (3):233-40.
14. Vigers, A. J., Roberts, W. K., Selitrennikoff, C. P. A new family of plant antifungal proteins. Mol Plant Microbe Interact, 1991. 4 (4):315-23.
15. Clare, A., Karwath, A., Ougham, H., et al. Functional bioinformatics for Arabidopsis thaliana. Bioinformatics, 2006. 22 (9):1130-6.
16. Youn, E., Peters, B., Radivojac, P., et al. Evaluation of features for catalytic residue prediction in novel folds. Protein Sci, 2007. 16 (2):216-26.
17. Vassilopoulou, E., Zuidmeer, L., Akkerdaas, J., et al. Severe immediate allergic reactions to grapes: part of a lipid transfer protein-associated clinical syndrome. Int Arch Allergy Immunol, 2007. 143 (2):92-102.
18. Ding, D. F., Qian, J., Feng, Z. K. A differential geometric treatment of protein structure comparison. Bull Math Biol, 1994. 56 (5):923-43.