메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

Conserved upstream open reading frames in higher plants

Author keywords

[No Author keywords available]

Indexed keywords

5' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; CEREAL; COMPUTER PROGRAM; CONTROLLED STUDY; EXPRESSED SEQUENCE TAG; GENE IDENTIFICATION; GENETIC CONSERVATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; ORTHOLOGY; PLANT GENETICS; RNA ANALYSIS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TRANSLATION REGULATION; CODON; GENETICS; METABOLISM; PLANT;

EID: 50549100596     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-361     Document Type: Article
Times cited : (56)

References (62)
  • 1
    • 23144450198 scopus 로고    scopus 로고
    • RNALOSS: A web server for RNA locally optimal secondary structures
    • (Web Server issue) 1160143 15980545 10.1093/nar/gki382
    • Clote P RNALOSS: A web server for RNA locally optimal secondary structures Nucleic acids research 2005, 33(Web Server issue):W600-4. 1160143 15980545 10.1093/nar/gki382
    • (2005) Nucleic Acids Research , vol.33
    • Clote, P.1
  • 3
    • 0036207282 scopus 로고    scopus 로고
    • Untranslated regions of mRNAs
    • 10.1186/gb-2002-3-3-reviews0004
    • Mignone F Gissi C Liuni S Pesole G Untranslated regions of mRNAs Genome Biol 2002, 3(3):rEviews0004.1-reviews0004.10. 10.1186/ gb-2002-3-3-reviews0004
    • (2002) Genome Biol , vol.3 , Issue.3
    • Mignone, F.1    Gissi, C.2    Liuni, S.3    Pesole, G.4
  • 4
    • 0034307483 scopus 로고    scopus 로고
    • Internal ribosome initiation of translation and the control of cell death
    • 10.1016/S0168-9525(00)02106-5 11050335
    • Holcik M Sonenberg N Korneluk RG Internal ribosome initiation of translation and the control of cell death Trends Genet 2000, 16:469-473. 10.1016/S0168-9525(00)02106-5 11050335
    • (2000) Trends Genet , vol.16 , pp. 469-473
    • Holcik, M.1    Sonenberg, N.2    Korneluk, R.G.3
  • 5
    • 0023665902 scopus 로고
    • An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs
    • 306349 10.1093/nar/15.20.8125
    • Kozak M An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs Nucleic Acids Res 1987, 15(20):8125-8148. 306349 3313277 10.1093/nar/15.20.8125
    • (1987) Nucleic Acids Res , vol.15 , pp. 8125-8148
    • Kozak, M.1
  • 6
    • 0034637523 scopus 로고    scopus 로고
    • In vitro translation of the upstream open reading frame in the mammalian mRNA encoding S-adenosylmethionine decarboxylase
    • 10.1074/jbc.M003364200 10829027
    • Raney A Baron AC Mize GJ Law GL Morris DR In vitro translation of the upstream open reading frame in the mammalian mRNA encoding S-adenosylmethionine decarboxylase J Biol Chem 2000, 275(32):24444-24450. 10.1074/jbc.M003364200 10829027
    • (2000) J Biol Chem , vol.275 , Issue.32 , pp. 24444-24450
    • Raney, A.1    Baron, A.C.2    Mize, G.J.3    Law, G.L.4    Morris, D.R.5
  • 7
    • 0035107115 scopus 로고    scopus 로고
    • Role of mRNA secondary structure in translational repression of the maize transcriptional activator Lc(1,2)
    • 65616 10.1104/pp.125.3.1380
    • Wang L Wessler SR Role of mRNA secondary structure in translational repression of the maize transcriptional activator Lc(1,2) Plant Physiol 2001, 125(3):1380-1387. 65616 11244117 10.1104/pp.125.3.1380
    • (2001) Plant Physiol , vol.125 , Issue.3 , pp. 1380-1387
    • Wang, L.1    Wessler, S.R.2
  • 8
    • 0038064178 scopus 로고    scopus 로고
    • The zipper model of translational control: A small upstream ORF is the switch that controls structural remodeling of an mRNA leader
    • 10.1016/S0092-8674(03)00345-3 12757712
    • Yaman I Fernandez J Liu H Caprara M Komar AA Koromilas AE Zhou L Snider MD Scheuner D Kaufman RJ Hatzoglou M The zipper model of translational control: A small upstream ORF is the switch that controls structural remodeling of an mRNA leader Cell 2003, 113(4):519-531. 10.1016/ S0092-8674(03)00345-3 12757712
    • (2003) Cell , vol.113 , Issue.4 , pp. 519-531
    • Yaman, I.1    Fernandez, J.2    Liu, H.3    Caprara, M.4    Komar, A.A.5    Koromilas, A.E.6    Zhou, L.7    Snider, M.D.8    Scheuner, D.9    Kaufman, R.J.10    Hatzoglou, M.11
  • 9
    • 0035862984 scopus 로고    scopus 로고
    • Characterization of monocot and dicot plant S-adenosyl-l-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames
    • 1221584 10.1042/0264-6021:3530403
    • Franceschetti M Hanfrey C Scaramagli S Torrigiani P Bagni N Burtin D Michael AJ Characterization of monocot and dicot plant S-adenosyl-l-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames Biochem J 2001, 353(Pt 2):403-409. 1221584 11139406 10.1042/0264-6021:3530403
    • (2001) Biochem J , vol.353 , Issue.PART 2 , pp. 403-409
    • Franceschetti, M.1    Hanfrey, C.2    Scaramagli, S.3    Torrigiani, P.4    Bagni, N.5    Burtin, D.6    Michael, A.J.7
  • 10
    • 0037815066 scopus 로고    scopus 로고
    • The two upstream open reading frames of oncogene mdm2 have different translational regulatory properties
    • 10.1074/jbc.M300316200 12730202
    • Jin X Turcott E Englehardt S Mize GJ Morris DR The two upstream open reading frames of oncogene mdm2 have different translational regulatory properties J Biol Chem 2003, 278(28):25716-25721. 10.1074/jbc.M300316200 12730202
    • (2003) J Biol Chem , vol.278 , pp. 25716-25721
    • Jin, X.1    Turcott, E.2    Englehardt, S.3    Mize, G.J.4    Morris, D.R.5
  • 11
    • 0029982204 scopus 로고    scopus 로고
    • Ribosome regulation by the nascent peptide
    • 239448 8801438
    • Lovett PS Rogers EJ Ribosome regulation by the nascent peptide Microbiol Rev 1996, 60(2):366-385. 239448 8801438
    • (1996) Microbiol Rev , vol.60 , Issue.2 , pp. 366-385
    • Lovett, P.S.1    Rogers, E.J.2
  • 12
    • 36148976155 scopus 로고    scopus 로고
    • Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes
    • 2075485 17663791 10.1186/1741-7007-5-32
    • Hayden CA Jorgensen RA Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes BMC Biol 2007, 5:32. 2075485 17663791 10.1186/ 1741-7007-5-32
    • (2007) BMC Biol , vol.5 , pp. 32
    • Hayden, C.A.1    Jorgensen, R.A.2
  • 13
    • 33646136452 scopus 로고    scopus 로고
    • Evidence for conservation and selection of upstream open reading frames suggests probable encoding of bioactive peptides
    • 1402274 10.1186/1471-2164-7-16
    • Crowe ML Wang XQ Rothnagel JA Evidence for conservation and selection of upstream open reading frames suggests probable encoding of bioactive peptides BMC Genomics 2006, 7:16. 1402274 16438715 10.1186/1471-2164-7-16
    • (2006) BMC Genomics , vol.7 , pp. 16
    • Crowe, M.L.1    Wang, X.Q.2    Rothnagel, J.A.3
  • 14
    • 41449119243 scopus 로고    scopus 로고
    • Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species
    • 2276209 18237443 10.1186/1471-2164-9-61
    • Hayden CA Bosco G Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species BMC Genomics 2008, 9:61. 2276209 18237443 10.1186/ 1471-2164-9-61
    • (2008) BMC Genomics , vol.9 , pp. 61
    • Hayden, C.A.1    Bosco, G.2
  • 15
    • 17044409660 scopus 로고    scopus 로고
    • uAUG and uORFs in human and rodent 5′untranslated mRNAs
    • 10.1016/j.gene.2004.11.041 15777708
    • Iacono M Mignone F Pesole G uAUG and uORFs in human and rodent 5′untranslated mRNAs Gene 2005, 349:97-105. 10.1016/ j.gene.2004.11.041 15777708
    • (2005) Gene , vol.349 , pp. 97-105
    • Iacono, M.1    Mignone, F.2    Pesole, G.3
  • 16
    • 0035890071 scopus 로고    scopus 로고
    • Physical evidence for distinct mechanisms of translational control by upstream open reading frames
    • 125715 11707416 10.1093/emboj/20.22.6453
    • Gaba A Wang Z Krishnamoorthy T Hinnebusch AG Sachs MS Physical evidence for distinct mechanisms of translational control by upstream open reading frames EMBO J 2001, 20(22):6453-6463. 125715 11707416 10.1093/ emboj/20.22.6453
    • (2001) EMBO J , vol.20 , pp. 6453-6463
    • Gaba, A.1    Wang, Z.2    Krishnamoorthy, T.3    Hinnebusch, A.G.4    Sachs, M.S.5
  • 17
    • 0029943803 scopus 로고    scopus 로고
    • Role of an upstream open reading frame in mediating arginine-specific translational control in Neurospora crassa
    • 177922 8636015
    • Luo Z Sachs MS Role of an upstream open reading frame in mediating arginine-specific translational control in Neurospora crassa J Bacteriol 1996, 178(8):2172-2177. 177922 8636015
    • (1996) J Bacteriol , vol.178 , Issue.8 , pp. 2172-2177
    • Luo, Z.1    Sachs, M.S.2
  • 18
    • 0042065288 scopus 로고    scopus 로고
    • Regulation of fungal gene expression via short open reading frames in the mRNA 5′untranslated region
    • 10.1046/j.1365-2958.2003.03622.x 12890013
    • Vilela C McCarthy JE Regulation of fungal gene expression via short open reading frames in the mRNA 5′untranslated region Mol Microbiol 2003, 49(4):859-867. 10.1046/j.1365-2958.2003.03622.x 12890013
    • (2003) Mol Microbiol , vol.49 , pp. 859-867
    • Vilela, C.1    McCarthy, J.E.2
  • 19
    • 0036797563 scopus 로고    scopus 로고
    • Control of eukaryotic protein synthesis by upstream open reading frames in the 5′-untranslated region of an mRNA
    • 1222879 10.1042/BJ20011706
    • Meijer HA Thomas AA Control of eukaryotic protein synthesis by upstream open reading frames in the 5′-untranslated region of an mRNA Biochem J 2002, 367(Pt 1):1-11. 1222879 12117416 10.1042/BJ20011706
    • (2002) Biochem J , vol.367 , Issue.PART 1 , pp. 1-11
    • Meijer, H.A.1    Thomas, A.A.2
  • 20
    • 0033838141 scopus 로고    scopus 로고
    • Termination and peptide release at the upstream open reading frame are required for downstream translation on synthetic shunt-competent mRNA leaders
    • 86096 10.1128/MCB.20.17.6212-6223.2000
    • Hemmings-Mieszczak M Hohn T Preiss T Termination and peptide release at the upstream open reading frame are required for downstream translation on synthetic shunt-competent mRNA leaders Mol Cell Biol 2000, 20(17):6212-6223. 86096 10938098 10.1128/MCB.20.17.6212-6223.2000
    • (2000) Mol Cell Biol , vol.20 , pp. 6212-6223
    • Hemmings-Mieszczak, M.1    Hohn, T.2    Preiss, T.3
  • 21
    • 0034705289 scopus 로고    scopus 로고
    • The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames
    • 10.1016/S0092-8674(00)80886-7 10892745
    • Ruiz-Echevarria MJ Peltz SW The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames Cell 2000, 101(7):741-751. 10.1016/S0092-8674(00)80886-7 10892745
    • (2000) Cell , vol.101 , Issue.7 , pp. 741-751
    • Ruiz-Echevarria, M.J.1    Peltz, S.W.2
  • 22
    • 0033153446 scopus 로고    scopus 로고
    • Post-termination ribosome interactions with the 5′UTR modulate yeast mRNA stability
    • 1171395 10357825 10.1093/emboj/18.11.3139
    • Vilela C Ramirez CV Linz B Rodrigues-Pousada C McCarthy JE Post-termination ribosome interactions with the 5′UTR modulate yeast mRNA stability EMBO J 1999, 18(11):3139-3152. 1171395 10357825 10.1093/emboj/18.11.3139
    • (1999) EMBO J , vol.18 , pp. 3139-3152
    • Vilela, C.1    Ramirez, C.V.2    Linz, B.3    Rodrigues-Pousada, C.4    McCarthy, J.E.5
  • 23
    • 38449090521 scopus 로고    scopus 로고
    • The use of fungal in vitro systems for studying translational regulation
    • 10.1016/S0076-6879(07)29010-X 17913625
    • Wu C Amrani N Jacobson A Sachs MS The use of fungal in vitro systems for studying translational regulation Methods Enzymol 2007, 429:203-225. 10.1016/S0076-6879(07)29010-X 17913625
    • (2007) Methods Enzymol , vol.429 , pp. 203-225
    • Wu, C.1    Amrani, N.2    Jacobson, A.3    Sachs, M.S.4
  • 24
    • 33751013736 scopus 로고    scopus 로고
    • her-2 upstream open reading frame effects on the use of downstream initiation codons
    • 1668710 10.1016/j.bbrc.2006.09.128
    • Spevak CC Park EH Geballe AP Pelletier J Sachs MS her-2 upstream open reading frame effects on the use of downstream initiation codons Biochem Biophys Res Commun 2006, 350(4):834-841. 1668710 17045969 10.1016/ j.bbrc.2006.09.128
    • (2006) Biochem Biophys Res Commun , vol.350 , pp. 834-841
    • Spevak, C.C.1    Park, E.H.2    Geballe, A.P.3    Pelletier, J.4    Sachs, M.S.5
  • 25
    • 50549102501 scopus 로고    scopus 로고
    • A first step towards learning which uORFs regulate gene expression
    • Selpi Bryant CH Kemp GJL Cvijovic M A first step towards learning which uORFs regulate gene expression J Int Bioinformatics 2006, 3(2):31-44.
    • (2006) J Int Bioinformatics , vol.3 , pp. 31-44
    • Bryant, C.H.1    Kemp, G.J.L.2    Cvijovic, M.3
  • 26
    • 41449117605 scopus 로고    scopus 로고
    • uORFs, reinitiation and alternative translation start sites in human mRNAs
    • 10.1016/j.febslet.2008.03.014 18358843
    • Kochetov AV Ahmad S Ivanisenko V Volkova OA Kolchanov NA Sarai A uORFs, reinitiation and alternative translation start sites in human mRNAs FEBS Lett 2008, 582(9):1293-1297. 10.1016/j.febslet.2008.03.014 18358843
    • (2008) FEBS Lett , vol.582 , Issue.9 , pp. 1293-1297
    • Kochetov, A.V.1    Ahmad, S.2    Ivanisenko, V.3    Volkova, O.A.4    Kolchanov, N.A.5    Sarai, A.6
  • 27
    • 19044374467 scopus 로고    scopus 로고
    • The pivotal roles of the plant S-adenosylmethionine decarboxylase 5′ untranslated leader sequence in regulation of gene expression at the transcriptional and posttranscriptional levels
    • 1104182 10.1104/pp.104.056770
    • Hu WW Gong H Pua EC The pivotal roles of the plant S-adenosylmethionine decarboxylase 5′ untranslated leader sequence in regulation of gene expression at the transcriptional and posttranscriptional levels Plant Physiol 2005, 138(1):276-286. 1104182 15821146 10.1104/ pp.104.056770
    • (2005) Plant Physiol , vol.138 , pp. 276-286
    • Hu, W.W.1    Gong, H.2    Pua, E.C.3
  • 28
    • 34547743197 scopus 로고    scopus 로고
    • Cloning, functional identification and structural modelling of Vitis vinifera S-adenosylmethionine decarboxylase
    • 10.1016/j.jplph.2006.07.009 16982115
    • Tassoni A Franceschetti M Tasco G Casadio R Bagni N Cloning, functional identification and structural modelling of Vitis vinifera S-adenosylmethionine decarboxylase J Plant Physiol 2007, 164(9):1208-1219. 10.1016/j.jplph.2006.07.009 16982115
    • (2007) J Plant Physiol , vol.164 , Issue.9 , pp. 1208-1219
    • Tassoni, A.1    Franceschetti, M.2    Tasco, G.3    Casadio, R.4    Bagni, N.5
  • 29
    • 0036007727 scopus 로고    scopus 로고
    • Inhibitory effect of myb7 uORF on downstream gene expression in homologous (rice) and heterologous (tobacco) systems
    • 10.1023/A:1013340004348 11855732
    • Locatelli F Magnani E Vighi C Lanzanova C Coraggio I Inhibitory effect of myb7 uORF on downstream gene expression in homologous (rice) and heterologous (tobacco) systems Plant Mol Biol 2002, 48(3):309-318. 10.1023/A:1013340004348 11855732
    • (2002) Plant Mol Biol , vol.48 , Issue.3 , pp. 309-318
    • Locatelli, F.1    Magnani, E.2    Vighi, C.3    Lanzanova, C.4    Coraggio, I.5
  • 30
    • 0027343819 scopus 로고
    • Translation of the mRNA of the maize transcriptional activator Opaque-2 is inhibited by upstream open reading frames present in the leader sequence
    • 160251 8439744 10.1105/tpc.5.1.65
    • Lohmer S Maddaloni M Motto M Salamini F Thompson RD Translation of the mRNA of the maize transcriptional activator Opaque-2 is inhibited by upstream open reading frames present in the leader sequence Plant Cell 1993, 5(1):65-73. 160251 8439744 10.1105/tpc.5.1.65
    • (1993) Plant Cell , vol.5 , Issue.1 , pp. 65-73
    • Lohmer, S.1    Maddaloni, M.2    Motto, M.3    Salamini, F.4    Thompson, R.D.5
  • 31
    • 0032191297 scopus 로고    scopus 로고
    • Inefficient reinitiation is responsible for upstream open reading frame-mediated translational repression of the maize R gene
    • 143946 9761799 10.1105/tpc.10.10.1733
    • Wang L Wessler SR Inefficient reinitiation is responsible for upstream open reading frame-mediated translational repression of the maize R gene Plant Cell 1998, 10(10):1733-1746. 143946 9761799 10.1105/tpc.10.10.1733
    • (1998) Plant Cell , vol.10 , pp. 1733-1746
    • Wang, L.1    Wessler, S.R.2
  • 32
    • 3142740256 scopus 로고    scopus 로고
    • A conserved upstream open reading frame mediates sucrose-induced repression of translation
    • 514156 10.1105/tpc.019349
    • Wiese A Elzinga N Wobbes B Smeekens S A conserved upstream open reading frame mediates sucrose-induced repression of translation Plant Cell 2004, 16(7):1717-1729. 514156 15208401 10.1105/tpc.019349
    • (2004) Plant Cell , vol.16 , pp. 1717-1729
    • Wiese, A.1    Elzinga, N.2    Wobbes, B.3    Smeekens, S.4
  • 33
    • 3442894514 scopus 로고    scopus 로고
    • The 5′ UTR negatively regulates quantitative and spatial expression from the ABI3 promoter
    • 10.1023/B:PLAN.0000028767.06820.34 15159632
    • Ng DW Chandrasekharan MB Hall TC The 5′ UTR negatively regulates quantitative and spatial expression from the ABI3 promoter Plant Mol Biol 2004, 54(1):25-38. 10.1023/B:PLAN.0000028767.06820.34 15159632
    • (2004) Plant Mol Biol , vol.54 , Issue.1 , pp. 25-38
    • Ng, D.W.1    Chandrasekharan, M.B.2    Hall, T.C.3
  • 34
    • 33746682541 scopus 로고    scopus 로고
    • Identification of a dehydration and ABA-responsive promoter regulon and isolation of corresponding DNA binding proteins for the group 4 LEA gene CpC2 from C. plantagineum
    • 10.1007/s11103-006-0038-3 16897481
    • Ditzer A Bartels D Identification of a dehydration and ABA-responsive promoter regulon and isolation of corresponding DNA binding proteins for the group 4 LEA gene CpC2 from C. plantagineum Plant Mol Biol 2006, 61(4-5):643-663. 10.1007/s11103-006-0038-3 16897481
    • (2006) Plant Mol Biol , vol.61 , Issue.4-5 , pp. 643-663
    • Ditzer, A.1    Bartels, D.2
  • 35
    • 33645973556 scopus 로고    scopus 로고
    • The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning
    • 1276021 10.1105/tpc.105.036533
    • Nishimura T Wada T Yamamoto KT Okada K The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning Plant Cell 2005, 17(11):2940-2953. 1276021 16227452 10.1105/tpc.105.036533
    • (2005) Plant Cell , vol.17 , Issue.11 , pp. 2940-2953
    • Nishimura, T.1    Wada, T.2    Yamamoto, K.T.3    Okada, K.4
  • 36
    • 0034736511 scopus 로고    scopus 로고
    • Analysis of oligonucleotide AUG start codon context in eukaryotic mRNAs
    • 10.1016/S0378-1119(00)00471-6 11164040
    • Pesole G Gissi C Grillo G Licciulli F Liuni S Saccone C Analysis of oligonucleotide AUG start codon context in eukaryotic mRNAs Gene 2000, 261(1):85-91. 10.1016/S0378-1119(00)00471-6 11164040
    • (2000) Gene , vol.261 , Issue.1 , pp. 85-91
    • Pesole, G.1    Gissi, C.2    Grillo, G.3    Licciulli, F.4    Liuni, S.5    Saccone, C.6
  • 37
    • 33847664259 scopus 로고    scopus 로고
    • WeederH: An algorithm for finding conserved regulatory motifs and regions in homologous sequences
    • 1803799 10.1186/1471-2105-8-46
    • Pavesi G Zambelli F Pesole G WeederH: An algorithm for finding conserved regulatory motifs and regions in homologous sequences BMC Bioinformatics 2007, 8:46. 1803799 17286865 10.1186/1471-2105-8-46
    • (2007) BMC Bioinformatics , vol.8 , pp. 46
    • Pavesi, G.1    Zambelli, F.2    Pesole, G.3
  • 40
    • 0141942053 scopus 로고    scopus 로고
    • Construction and characterization of a half million clone BAC library of durum wheat (Triticum turgidum ssp. durum)
    • 10.1007/s00122-003-1331-z 12830387
    • Cenci A Chantret N Kong X Gu Y Anderson OD Fahima T Distelfeld A Dubcovsky J Construction and characterization of a half million clone BAC library of durum wheat (Triticum turgidum ssp. durum) Theor Appl Genet 2003, 107(5):931-939. 10.1007/s00122-003-1331-z 12830387
    • (2003) Theor Appl Genet , vol.107 , pp. 931-939
    • Cenci, A.1    Chantret, N.2    Kong, X.3    Gu, Y.4    Anderson, O.D.5    Fahima, T.6    Distelfeld, A.7    Dubcovsky, J.8
  • 43
    • 0032491377 scopus 로고    scopus 로고
    • Predicting function: From genes to genomes and back
    • 10.1006/jmbi.1998.2144 9790834
    • Bork P Dandekar T Diaz-Lazcoz Y Eisenhaber F Huynen M Yuan Y Predicting function: From genes to genomes and back J Mol Biol 1998, 283(4):707-725. 10.1006/jmbi.1998.2144 9790834
    • (1998) J Mol Biol , vol.283 , Issue.4 , pp. 707-725
    • Bork, P.1    Dandekar, T.2    Diaz-Lazcoz, Y.3    Eisenhaber, F.4    Huynen, M.5    Yuan, Y.6
  • 44
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • 10.1126/science.278.5338.631 9381173
    • Tatusov RL Koonin EV Lipman DJ A genomic perspective on protein families Science 1997, 278(5338):631-637. 10.1126/science.278.5338.631 9381173
    • (1997) Science , vol.278 , Issue.5338 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 45
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 308517 10.1093/nar/22.22.4673
    • Thompson JD Higgins DG Gibson TJ CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22(22):4673-4680. 308517 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 46
    • 0037113965 scopus 로고    scopus 로고
    • Abrogation of upstream open reading frame-mediated translational control of a plant S-adenosylmethionine decarboxylase results in polyamine disruption and growth perturbations
    • 10.1074/jbc.M206161200 12205086
    • Hanfrey C Franceschetti M Mayer MJ Illingworth C Michael AJ Abrogation of upstream open reading frame-mediated translational control of a plant S-adenosylmethionine decarboxylase results in polyamine disruption and growth perturbations J Biol Chem 2002, 277(46):44131-44139. 10.1074/ jbc.M206161200 12205086
    • (2002) J Biol Chem , vol.277 , pp. 44131-44139
    • Hanfrey, C.1    Franceschetti, M.2    Mayer, M.J.3    Illingworth, C.4    Michael, A.J.5
  • 47
    • 0031460023 scopus 로고    scopus 로고
    • Context sequences of translation initiation codon in plants
    • 10.1023/A:1005816823636 9426620
    • Joshi CP Zhou H Huang X Chiang VL Context sequences of translation initiation codon in plants Plant Mol Biol 1997, 35(6):993-1001. 10.1023/ A:1005816823636 9426620
    • (1997) Plant Mol Biol , vol.35 , Issue.6 , pp. 993-1001
    • Joshi, C.P.1    Zhou, H.2    Huang, X.3    Chiang, V.L.4
  • 48
    • 2542589355 scopus 로고    scopus 로고
    • 5′-untranslated regions with multiple upstream AUG codons can support low-level translation via leaky scanning and reinitiation
    • 390293 10.1093/nar/gkh305
    • Wang XQ Rothnagel JA 5′-untranslated regions with multiple upstream AUG codoncan support low-level translation via leaky scanning and reinitiation Nucleic Acids Res 2004, 32(4):1382-1391. 390293 14990743 10.1093/nar/gkh305
    • (2004) Nucleic Acids Res , vol.32 , Issue.4 , pp. 1382-1391
    • Wang, X.Q.1    Rothnagel, J.A.2
  • 50
    • 0037901828 scopus 로고    scopus 로고
    • Ribosomes stalling on uORF1 in the Xenopus Cx41 5′ UTR inhibit downstream translation initiation
    • 162333 10.1093/nar/gkg429
    • Meijer HA Thomas AA Ribosomes stalling on uORF1 in the Xenopus Cx41 5′ UTR inhibit downstream translation initiation Nucleic Acids Res 2003, 31(12):3174-3184. 162333 12799445 10.1093/nar/gkg429
    • (2003) Nucleic Acids Res , vol.31 , Issue.12 , pp. 3174-3184
    • Meijer, H.A.1    Thomas, A.A.2
  • 52
    • 33749322772 scopus 로고    scopus 로고
    • Inhibition of translation by consecutive rare leucine codons in E. coli: Absence of effect of varying mRNA stability
    • 10.3727/000000006783991881 17017124
    • Shu P Dai H Gao W Goldman E Inhibition of translation by consecutive rare leucine codons in E. coli: Absence of effect of varying mRNA stability Gene Expr 2006, 13(2):97-106. 10.3727/000000006783991881 17017124
    • (2006) Gene Expr , vol.13 , Issue.2 , pp. 97-106
    • Shu, P.1    Dai, H.2    Gao, W.3    Goldman, E.4
  • 53
    • 34548659178 scopus 로고    scopus 로고
    • Translational regulation of human methionine synthase by upstream open reading frames
    • 17683808
    • Col B Oltean S Banerjee R Translational regulation of human methionine synthase by upstream open reading frames Biochim Biophys Acta 2007, 1769(9-10):532-540. 17683808
    • (2007) Biochim Biophys Acta , vol.1769 , Issue.9-10 , pp. 532-540
    • Col, B.1    Oltean, S.2    Banerjee, R.3
  • 54
    • 40749151132 scopus 로고    scopus 로고
    • A novel mechanism for the control of translation initiation by amino acids, mediated by phosphorylation of eukaryotic initiation factor eIF2B
    • 2258763 10.1128/MCB.01512-07
    • Wang X Proud CG A novel mechanism for the control of translation initiation by amino acids, mediated by phosphorylation of eukaryotic initiation factor eIF2B Mol Cell Biol 2008, 28(5):1429-1442. 2258763 18160716 10.1128/MCB.01512-07
    • (2008) Mol Cell Biol , vol.28 , Issue.5 , pp. 1429-1442
    • Wang, X.1    Proud, C.G.2
  • 55
    • 28344450939 scopus 로고    scopus 로고
    • Arginine-rich motifs present multiple interfaces for specific binding by RNA
    • 1370873 10.1261/rna.2167605
    • Bayer TS Booth LN Knudsen SM Ellington AD Arginine-rich motifs present multiple interfaces for specific binding by RNA Rna 2005, 11(12):1848-1857. 1370873 16314457 10.1261/rna.2167605
    • (2005) Rna , vol.11 , Issue.12 , pp. 1848-1857
    • Bayer, T.S.1    Booth, L.N.2    Knudsen, S.M.3    Ellington, A.D.4
  • 56
    • 15944400722 scopus 로고    scopus 로고
    • Expression of AtMHX, an Arabidopsis vacuolar metal transporter, is repressed by the 5′ untranslated region of its gene
    • 10.1093/jxb/eri097 15710632
    • David-Assael O Saul H Saul V Mizrachy-Dagri T Berezin I Brook E Shaul O Expression of AtMHX, an Arabidopsis vacuolar metal transporter, is repressed by the 5′ untranslated region of its gene J Exp Bot 2005, 56(413):1039-1047. 10.1093/jxb/eri097 15710632
    • (2005) J Exp Bot , vol.56 , Issue.413 , pp. 1039-1047
    • David-Assael, O.1    Saul, H.2    Saul, V.3    Mizrachy-Dagri, T.4    Berezin, I.5    Brook, E.6    Shaul, O.7
  • 57
    • 33749037973 scopus 로고    scopus 로고
    • Posttranscriptional regulation by the upstream open reading frame of the phosphoethanolamine N-methyltransferase gene
    • 10.1271/bbb.60309 16960350
    • Tabuchi T Okada T Azuma T Nanmori T Yasuda T Posttranscriptional regulation by the upstream open reading frame of the phosphoethanolamine N-methyltransferase gene Biosci Biotechnol Biochem 2006, 70(9):2330-2334. 10.1271/bbb.60309 16960350
    • (2006) Biosci Biotechnol Biochem , vol.70 , Issue.9 , pp. 2330-2334
    • Tabuchi, T.1    Okada, T.2    Azuma, T.3    Nanmori, T.4    Yasuda, T.5
  • 58
    • 33750381409 scopus 로고    scopus 로고
    • The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene
    • 10.1242/dev.02535 16936072
    • Imai A Hanzawa Y Komura M Yamamoto KT Komeda Y Takahashi T The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene Development 2006, 133(18):3575-3585. 10.1242/dev.02535 16936072
    • (2006) Development , vol.133 , Issue.18 , pp. 3575-3585
    • Imai, A.1    Hanzawa, Y.2    Komura, M.3    Yamamoto, K.T.4    Komeda, Y.5    Takahashi, T.6
  • 59
    • 28244500966 scopus 로고    scopus 로고
    • A dual upstream open reading frame-based autoregulatory circuit controlling polyamine-responsive translation
    • 10.1074/jbc.M509340200 16176926
    • Hanfrey C Elliott KA Franceschetti M Mayer MJ Illingworth C Michael AJ A dual upstream open reading frame-based autoregulatory circuit controlling polyamine-responsive translation J Biol Chem 2005, 280(47):39229-39237. 10.1074/jbc.M509340200 16176926
    • (2005) J Biol Chem , vol.280 , Issue.47 , pp. 39229-39237
    • Hanfrey, C.1    Elliott, K.A.2    Franceschetti, M.3    Mayer, M.J.4    Illingworth, C.5    Michael, A.J.6
  • 61
    • 0033588103 scopus 로고    scopus 로고
    • Translational control by an upstream open reading frame in the HER-2/neu transcript
    • 10.1074/jbc.274.34.24335 10446211
    • Child SJ Miller MK Geballe AP Translational control by an upstream open reading frame in the HER-2/neu transcript J Biol Chem 1999, 274(34):24335-24341. 10.1074/jbc.274.34.24335 10446211
    • (1999) J Biol Chem , vol.274 , Issue.34 , pp. 24335-24341
    • Child, S.J.1    Miller, M.K.2    Geballe, A.P.3
  • 62
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: A sequence logo generator
    • 419797 10.1101/gr.849004
    • Crooks GE Hon G Chandonia JM Brenner SE WebLogo: A sequence logo generator Genome Res 2004, 14(6):1188-1190. 419797 15173120 10.1101/ gr.849004
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3    Brenner, S.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.