Topi, an IS630/Tc1/mariner-type transposable element in the African malaria mosquito, Anopheles gambiae

Gene

Volumn 423, Issue 1, 2008, Pages 63-71

  Subramanian, Ramanand A ^a   Akala, Olabiyi O ^a   Adejinmi, Johnson O ^b   O'Brochta, David A ^a  

^a UNIVERSITY OF MARYLAND BIOTECHNOLOGY INSTITUTE   (United States)

^b UNIVERSITY OF IBADAN   (Nigeria)

Author keywords

Anopheles gambiae; Malaria; Tc1, mariner; Topi; Transposable elements

Indexed keywords

ANOPHELES GAMBIAE; ARTICLE; GENE INSERTION; INSECT GENETICS; MALARIA; NIGERIA; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; TRANSPOSON;

AFRICA; ANIMALS; ANOPHELES GAMBIAE; BASE SEQUENCE; DNA TRANSPOSABLE ELEMENTS; GENE DOSAGE; GENES, INSECT; GENETIC DRIFT; OPEN READING FRAMES; PHYLOGENY; SELECTION (GENETICS);

ANOPHELES GAMBIAE; DAMALISCUS LUNATUS; HEXAPODA;

EID: 50549095516     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.06.023     Document Type: Article

References (54)

1. Aksoy S. Transgenesis and the management of vector-borne disease. Advances in experimental medicine and biology vol. 627 (2008), Landes Bioscience, Austin
2. Arensburger P., Orsetti J., Kim Y.J., Aluvihare C., and O'Brochta D.A. A new active transposable element, Herves, from the African malaria mosquito Anopheles gambiae. Genetics 169 (2005) 697-708
3. Atkinson P.W. Proposed uses of transposons in insect and medical biotechnology. In: Aksoy S. (Ed). Transgenesis and the Management of Vector-Borne Disease vol. 627 (2008), Landis Bioscience, Austin
4. Biedler J., Qi Y., Holligan D., della Torre A., Wessler S., and Tu Z. Transposable element (TE) display and rapid detection of TE insertion polymorphism in the Anopheles gambiae species complex. Insect Mol. Biol. 12 (2003) 211-216
5. Biemont C., Lemeunier F., Garcia Guerreiro M.P., Brookfield J.F., Gautier C., Aulard S., and Pasyukova E.G. Population dynamics of the copia, mdg1, mdg3, gypsy and P transposable elements in a natural population of Drosophila melanogaster. Genet. Res. 63 (1994) 197-212
6. Charlesworth B., and Charlesworth D. The population dynamics of transposable elements. Genet. Res. 42 (1983) 1-27
7. Charlesworth B., and Langley C.H. Population genetics of transposable elements in Drosophila. In: Selander R.K., Clark A.G., and Whittam T.S. (Eds). Evolution at the molecular level (1990), Sinauer Associates, Inc., Sunderland 150-177
8. Charlesworth B., Lapid A., and Canada D. Distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. II. Inferences on the nature of selection against elements. Genet. Res. 60 (1992) 115-130
9. Coy M.R., and Tu Z. Gambol and Tc1 are two distinct families of DD34E transposons: analysis of the Anopheles gambiae genome expands the diversity of the IS630-Tc1-mariner superfamily. Insect Mol. Biol. 14 (2005) 537-546
10. Engels W.R. P elements in Drosophila melanogaster. In: Berg D.E., and Howe M.M. (Eds). Mobile DNA (1989), American Society for Microbiology, Washington D.C. 439-484
11. Engels W.R. P elements in Drosophila. Curr. Top. Microbiol. Immunol. 204 (1996) 103-123
12. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
13. Gorrochotegui-Escalante N., and Black W.C. Amplifying whole insect genomes with multiple displacement amplification. Insect Mol. Biol. 12 (2003) 195-200
14. Grossman G.L., Cornel A.J., Rafferty C.S., Robertson H.M., and Collins F.H. Tsessebe, Topi and Tiang: three distinct Tc1-like transposable elements in the malaria vector, Anopheles gambiae. Genetica 105 (1999) 69-80
15. Guimond N., Bideshi D.K., Pinkerton A.C., Atkinson P.W., and O'Brochta D.A. Patterns of Hermes transposition in Drosophila melanogaster. Mol. Genet. Genomics 268 (2003) 779-790
16. Hartl D.L., Lohe A.R., and Lozovskaya E.R. Modern thoughts on an ancyent marinere: function, evolution, regulation. Annu. Rev. Genet. 31 (1997) 337-358
17. Hill S.R., Leung S.S., Quercia N.L., Vasiliauskas D., Yu J., Pasic I., Leung D., Tran A., and Romans P. Ikirara insertions reveal five new Anopheles gambiae transposable elements in islands of repetitious sequence. J. Mol. Evol. 52 (2001) 215-231
18. Holt R.A., et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science 298 (2002) 129-149
19. Kidwell M. Horizontal transfer of P elements and other short inverted repeat transposons. Genetica 86 (1992) 275-286
20. Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
21. Labrador M., del Carmen Seleme M., and Fontdevila A. The evolutionaly history of Drosophila buzzatii. XXXIV. The distribution of the retrotransposon Osvaldo in original and colonizing populations. Mol. Biol. Evol. 15 (1998) 1532-1547
22. Langley C.H., Brookfield J.F.Y., and Kaplan N. Transposable elements in Mendelian populations. I. A theory. Genetics 104 (1983) 457-471
23. Lehmann T., Hawley W.A., Grebert H., and Collins F.H. The effective population size of Anopheles gambiae in Kenya: implications for population structure. Mol. Biol. Evol. 15 (1998) 264-276
24. Lehmann T., Blackston C.R., Besansky N.J., Escalante A.A., Collins F.H., and Hawley W.A. The Rift Valley complex as a barrier to gene flow for Anopheles gambiae in Kenya: the mtDNA perspective. J. Heredity 91 (2000) 165-168
25. Lehmann T., Licht M., Elissa N., Maega B.T.A., Chimumbwa J.M., Watsenga F.T., Wondjii C.S., Simard F., and Hawley W.A. Population structure of Anopheles gambiae in Africa. J. Heredity 94 (2003) 133-147
26. Leigh-Brown A.J., and Moss J.E. Transposition of the I element and copia in natural populations of Drosophila melanogaster. Genet. Res. 49 (1987) 231-237
27. Meeraus W.H., Maxwell C., and O'Brochta D.A. Herves transposable elements in Tanzanian Anopheles gambiae - potential uses in malaria control. Trans. Royal Soc. Trop. Med. Hyg. 99 (2005) 942-956
28. Montgomery E.A., and Langley C.H. Transposable elements in Mendelian populations. II. Distribution of three copia-like elements in a natural population. Genetics 104 (1983) 473-483
29. Morlais I., Poncon N., Simard F., Cohuet A., and Fontenille D. Intraspecific nucleotide variation in Anopheles gambiae: new insights into the biology of malaria vectors. Am. J. Trop. Med. Hyg. 71 (2004) 795-802
30. Neafsey D.E., Blumenstiel J.P., and Hartl D.L. Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies. Mol. Biol. Evol. (2004)
31. Nei M., and Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U. S. A. 76 (1979) 5269-5273
32. Nei M., and Kumar S. Molecular Evolution and Phylogenetics (2000), University Press, New York
33. Nuzhdin S.V. The distribution of transposable elements on X chromosomes from a natural population of Drosophila simulans. Genet. Res. 66 (1995) 159-166
34. Nuzhdin S.V. Sure facts, speculations, and open questions about the evolution of transposable element copy number. Genetica 107 (1999) 129-137
35. O'Brochta D.A., and Handler A.M. Perspectives on the state of insect transgenics. In: Aksoy S. (Ed). Transgenesis and the Management of Vector-Borne Disease vol. 627 (2008), Landis Bioscience, Austin
36. O'Brochta D.A., Sethuraman N., Wilson R., Hice R.H., Pinkerton A.C., Levesque C.S., Bideshi D.K., Jasinskiene N., Coates C.J., James A.A., Lehane M.J., and Atkinson P.W. Gene vector and transposable element behavior in mosquitoes. J. Exp. Biol. 207 (2004) 1263-1263
37. O'Brochta D.A., Subramanian R.A., Orsetti J., Peckham E., Nolan N., Arensburger P., Atkinson P.W., and Charlwood D. hAT element population genetics in Anopheles gambiae s.l. in Mozambique. Genetica 127 (2006) 185-198
38. O'Hare K., Driver A., McGrath S., and Johnson-Schlitz D.M. Distribution and structure of cloned P elements for the Drosophila melanogaster P strain π2. Genet. Res. 60 (1992) 33-41
39. Rio D.C. P transposable elements in Drosophila melanogaster. In: Craig N.L., Craige R., Gellert M., and Lambowitz A.M. (Eds). Mobile DNA II (2002), ASM Press, Washington, D.C. 1204
40. Robertson H.M. Evolution of DNA transposons in eukaryotes. In: Craig N.L., Craige R., Gellert M., and Lambowitz A.M. (Eds). Mobile DNA II (2002), ASM Press, Washington, D.C. 1093-1110
41. Rozas J., and Rozas R. DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data. Comput. Appl. Biosci. 11 (1995) 621-625
42. Rozas J., Sanchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analysis by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
43. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
44. Sakoyama Y., Todo T., Ishiwachigusa S., Honjo T., and Kondo S. Structures of defective P transposable elements prevalent in natural-Q and Q-derived M-strains of Drosophila melanogaster. Proc. Natl. Acad. Sci. U. S. A. 82 (1985) 6236-6239
45. Sanchez-Gracia A., Maside X., and Charlesworth B. High rate of horizontal transfer of transposable elements in Drosophila. Trends Genet. 21 (2005) 200-2003
46. Shao H.G., and Tu Z.J. Expanding the diversity of the IS630-Tc1-mariner superfamily: Discovery of a unique DD37E transposon and reclassification of the DD37D and DD39D transposons. Genetics 159 (2001) 1103-1115
47. Subramanian R.A., Arensburger P., Atkinson P.W., and O'Brochta D.A. Transposable element dynamics of the hAT element Herves in the human malaria vector, Anopheles gambiae, s.s. Genetics 176 (2007) 2477-2487
48. Tamura K., Nei M., and Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 11030-11035
49. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
50. Taylor C.E., Toure Y.T., Coluzzi M., and Petrarca V. Effective population size and persistence of Anopheles arabiensis during the dry season in west Africa. Med. Vet. Entomol. 7 (1993) 351-357
51. Watterson G.A. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7 (1975) 256-276
52. Wright S.I., Le Q.H., Schoen D.J., and Bureau T.E. Population dynamics of an Ac-like transposable element in self- and cross-pollinating Arabidopsis. Genetics 158 (2001) 1279-1288
53. Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 (1997) 555-556
54. Yang Z., Nielsen R., Goldman N., and Pedersen A.-M.K. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155 (2000) 431-449