The future impact of animal genomics in animal health research

Developments in Biologicals

Volumn 132, Issue , 2008, Pages 3-11

  Pinard Van Der Laan, M H ^a   Gay, C G ^b  

^a CEMAGREF   (France)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Animal genomes; Animal genomics; Bioinformatics; Functional genomics; Genetic markers

Indexed keywords

EID: 50249138162     PISSN: 14246074     EISSN: None     Source Type: Book Series    
DOI: 10.1159/000317139     Document Type: Conference Paper

References (45)

1. Collins FS, Green ED, Guttmacher AE, Guyer MS: A vision for the future of genomics research. Nature 2003; 422:835-847.
2. International HapMap Consortium: A haplotype map of the human genome. Nature 2005;437:1299-1320.
3. The International HapMap Consortium: A second generation human haplotype map of over 3.1 million SNPs. Nature 2007; 449:851-861.
4. Wang E, Panelli MC, Marincola FM: The impact of genomics on the biotechnology industry. Expert Opin Biol Ther 2001; 1:749-751.
5. Guttmacher AE, Collins FS: Realizing the promise of genomics in biomedical research. JAMA 2005; 294:1399-1402.
6. Trevino V, Falciani F, Barrera-Saldana HA: DNA microarrays: a powerful genomic tool for biomedical and clinical research. Mol Med 2007; 13(9-10):527-541.
7. Heller MJ: DNA microarray technology: devices, systems, and applications. Annu Rev Biomed Eng. 2002;4:129-153.
8. Buza TJ, McCarthy FM, Burgess SC. Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome. BMC Genomics. 2007;8:425.
9. Eukaryotic Genome Sequencing Projects:Genome Project. National Center for Biotechnology Information (NCBI). http://www.ncbi.nlm.nih.gov/genomes/leuks. cgi. Last accessed on May 25, 2008.
10. International Chicken Genome Consortium: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004;32:695-716.
11. International Chicken Polymorphism Map Consortium: A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 2004;432:717-722.
12. Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, et al: Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 2005;438:803-819.
13. Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, et al: The dog genome: survey sequencing and comparative analysis. Science, 2003;301:1898-1903.
14. Everts-van der Wind A, Larkin DM, Green CA, Elliott JS, Olmstead CA, Chiu R, et al: A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution. Proc Natl Acad Sci USA 2005; 102:18526-18531.
15. Pontius JU, Mullikin JC, Smith DR, Agencourt Sequencing Team, Lindblad-Toh K, Gnerre S, et al: Initial sequence and comparative analysis of the cat genome. Genome Res 2007;17:1675-1689.
16. Wernersson R, Schierup MH, Jørgensen SG, GorodkinJ, Panitz F, Staerfeldt HH, et al: Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics, 2005;6:70.
17. Swinburne JE, Boursnell M, Hill G, Pettitt L, Allen T, Chowdharry B, et al: Single linkage group per chromosome genetic linkage map for the horse, based on two three-generation, full-sibling, crossbred horse reference families. Genomics 2006;87:1-29.
18. Schook LB, Kuzmuk K, Adam S, Rund L, Chen K, Rogatcheva R, et al: DNA-based animal models of human disease: from genotype to phenotype. Dev Biol 2008;132:15-25.
19. Liu GE, Van Tassell CP, Sonstegard TS, Li RW, Alexander LJ, Keele JW, et al: Detection of germline and somatic copy number variations in cattle. Dev Biol 2008;132:231-237.
20. Georges M: Mapping, fine mapping, and molecular dissection of quantitative trait loci in domestic animals. Annu Rev Genomics Hum Genet 2007;8:131-162.
21. Houston RD, Haley CS, Guy DR, Hamilton A, Tinch A, Taggart JB, et al: Detection and confirmation of a major QTL affecting resistance to infectious pancreatic necrosis (IPN) in Atlantic salmon (Salmo Salar). Dev Biol 2008;132:199-204.
22. Regitano LCA, Ibelli AMG, Gasparin G, Miyata M, Azevedo ALS, Coutinho LL, et al: On the search for markers of tick resistance in bovines. Dev Biol 2008;132:225-230.
23. Hasenstein JR, Hassen AT, Dekkers JCM, Lamont SJ: High resolution, advanced intercross mapping of host resistance to Salmonella colonization. Dev Biol 2008;132:213-218.
24. Long N, Gianola D, Rosa GJM, Weigel KA, Avendano S: Machine learning classification procedure for selecting SNP's in genomic selection: Application to early mortality in broilers. Dev Biol 2008; 132:373-376.
25. Meuwissen THE, Hayes BJ, Goddard ME: Prediction of total genetic value using genome wide dense marker maps. Genetics 2001;157:1819-1829.
26. Raadsma HW, Moser G, Crump RE, Cavanagh JJ, Khatkar M, Solkner J, et al: Predicting genetic merit for mastitis and fertility in dairy cattle using genome wide selection and high density SNP screens. Dev Biol 2008;132:219-223
27. Goddard ME: The use of high density genotyping in animal health. Dev Biol 2008;132:383-389.
28. Mellencamp A, Galina-Pantoja L, Gladney CD, Torremorell M: Improving pig health through genomics: a view from the industry. Dev Biol 2008;132:35-41.
29. Gibson JP, Bishop SC: Use of molecular markers to enhance resistance of livestock to disease: a global approach. Rev sci tech Off int Epiz 2005;24(1):343-353.
30. Beaumont C, Lecerf F, Protais J, Prevost K, Pitel F, Burlot T, et al: An integrated approach of genetic resistance to Salmonella carrier state in fowls: from genetics to genomics and modelling. Dev Biol 2008;132:353-357.
31. Cheng H, Niikura M, Kim T, Mao W, MacLea KS, Hunt H, et al: Using integrative genomics to elucidate genetic resistance to Marek's disease in chickens. Dev Biol 2008;132:365-372.
32. Gay CG, Zuerner R, Bannantine JP, Lillehoj HS, Zhu JJ, Green R, Pastoret PP: Genomics and vaccine development. Rev sci tech Off int Epiz 2007; 26 (1): 49-67.
33. Smits MA, Rebel JMJ, te Pas MFW, Hulst MM: Exploiting genomics to improve animal health. Dev Biol 2008;132:27-33
34. de Koning DJ, Carlborg O, Haley CS: The genetic dissection of immune response using gene-expression studies and genome mapping. Vet Immunol Immunopathol 2005;15;105:343-352.
35. Kaiser P, Howell J, Fife M, Sadeyen J-R, Salmon N, Rothwell L, et al: Integrated immunogenomics in the chicken: Deciphering the immune response to identify disease resistance genes. DevBiol2008; 132:57-66.
36. Lillehoj HS, Hong Y, Kim C: Quantitative genetic and functional genomics approaches to investigating parasite disease resistance and protective immune mechanisms in avian coccidiosis. Dev Biol. 2008; 132:67-75.
37. Zhu JJ, Lillehoj HS, Allen PC, van Tassell CP, Sonstegard TS, Cheng H, et al: Mapping quantitative trait loci associated with resistance to coccidiosis and growth. Poul Sci 2003;82:9-16.
38. Kim ES, Hong YH, Min W, Lillehoj HS: Fine-mapping of coccidia-resistant quantitative trait loci in chickens. Poul Sci, 2006; 85:2028-2030.
39. Kim CH, Lillehoj HS, Hong YH, Keeler CL Jr.: Comparison of transcriptional changes associated with E. acervulina and E. maxima infections using cDNA microarray technology. Dev Biol 2008; 132: 121-130.
40. Tuggle CK, Wang YF, Couture OP, Qu L, Uthe JJ, Kuhar D, et al: Computational integration of structural and functional genomics data across species to develop information on porcine inflammatory gene regulatory pathway. Dev Biol 2008;132:105-113.
41. Flori F, Rogel-Gaillard C, Mariani V, Lemonnier G, Cochet M, Hugot K, et al: A combined transcriptomic approach to analyse the dialogue between pseudorabies virus and porcine cells. Dev Biol 2008; 132: 99-104.
42. Doran TJ, Wise TG, Schafer DS, Lowenthal JW: The use of RNAi and transgenics to develop viral disease resistant livestock. Dev Biol 2008;132:377-382.
43. Glass EJ: Genetic variation and responses to vaccines. Rev sci tech Off int Epiz 2004;5(2): 197-208.
44. O'Neill RG, Woolliams JA, Glass EJ, Williams JL, Fitzpatrick JL: Quantitative evaluation of genetic and environmental parameters determining antibody response induced by vaccination against bovine respiratory syncytial virus. Vaccine 2006;24 (18): 4007-4040.
45. Simianer H: Report of the International Society of Animal Genetics (ISAG) and FAO advisory group on animal genetic diversity, May 2007.