메뉴 건너뛰기




Volumn 5, Issue 4, 2008, Pages 487-497

Methods and tools for comparative genomics of foodborne pathogens

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE DECARBOXYLASE; BACTERIAL PROTEIN;

EID: 49949089457     PISSN: 15353141     EISSN: None     Source Type: Journal    
DOI: 10.1089/fpd.2008.0117     Document Type: Review
Times cited : (15)

References (34)
  • 1
    • 10344225098 scopus 로고    scopus 로고
    • Prolonged incubation period of salmonellosis associated with low bacterial doses
    • Abe K, Saito N, Kasuga F, et al. 2004. Prolonged incubation period of salmonellosis associated with low bacterial doses. J. Food Prot. 67:2735-2740.
    • (2004) J. Food Prot , vol.67 , pp. 2735-2740
    • Abe, K.1    Saito, N.2    Kasuga, F.3
  • 2
    • 17144375338 scopus 로고    scopus 로고
    • Survival of Shigella boydii 18 in bean salad
    • Agle ME, Martin SE, Blaschek HP. 2005. Survival of Shigella boydii 18 in bean salad. J. Food Prot. 68:838-840.
    • (2005) J. Food Prot , vol.68 , pp. 838-840
    • Agle, M.E.1    Martin, S.E.2    Blaschek, H.P.3
  • 3
    • 2142825741 scopus 로고    scopus 로고
    • Surveillance for sporadic foodborne disease in the 21st century: The FoodNet perspective
    • Allos BM, Moore MR, Griffin PM, et al. 2004. Surveillance for sporadic foodborne disease in the 21st century: the FoodNet perspective. Clin. Infect. Dis. 38 (Suppl 3):S115-S120.
    • (2004) Clin. Infect. Dis , vol.38 , Issue.SUPPL. 3
    • Allos, B.M.1    Moore, M.R.2    Griffin, P.M.3
  • 4
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, Gish W, Miller W, et al. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
    • (1990) J. Mol. Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3
  • 5
    • 34548491471 scopus 로고    scopus 로고
    • Microbiological safety of fresh-cut produce: Where are we now?
    • Matthews KR, ed, Washington, DC: American Society for Microbiology, pp
    • Bhagwat AA. 2006. Microbiological safety of fresh-cut produce: where are we now? In: Matthews KR, ed. Microbiology of Fresh Produce. Washington, DC: American Society for Microbiology, pp. 121-165.
    • (2006) Microbiology of Fresh Produce , pp. 121-165
    • Bhagwat, A.A.1
  • 6
    • 1942502288 scopus 로고    scopus 로고
    • Comparative analysis of transcriptional regulatory elements of glutamate-dependent acid-resistance systems of Shigella flexneri and Escherichia coli O157:H7
    • Bhagwat AA, Bhagwat MA. 2004. Comparative analysis of transcriptional regulatory elements of glutamate-dependent acid-resistance systems of Shigella flexneri and Escherichia coli O157:H7. FEMS Microbiol. Lett. 234:139-147.
    • (2004) FEMS Microbiol. Lett , vol.234 , pp. 139-147
    • Bhagwat, A.A.1    Bhagwat, M.A.2
  • 7
    • 23344437538 scopus 로고    scopus 로고
    • Characterization of enterohemorrhagic Escherichia coli strains based on acid resistance phenotypes
    • Bhagwat AA, Chan L, Han R, et al. 2005. Characterization of enterohemorrhagic Escherichia coli strains based on acid resistance phenotypes. Infect. Immun. 73:4993-5003.
    • (2005) Infect. Immun , vol.73 , pp. 4993-5003
    • Bhagwat, A.A.1    Chan, L.2    Han, R.3
  • 8
    • 0020214526 scopus 로고
    • A review of human Salmonellosis. I. Infective dose
    • Blaser MJ, Newman LS. 1982. A review of human Salmonellosis. I. Infective dose. Rev. Infect. Dis. 4:1096-1106.
    • (1982) Rev. Infect. Dis , vol.4 , pp. 1096-1106
    • Blaser, M.J.1    Newman, L.S.2
  • 9
  • 10
    • 14844307055 scopus 로고    scopus 로고
    • Comparative analysis of Shigella boydii 18 foodborne outbreak isolate and related enteric bacteria: Role of rpoS and adiA in acid stress response
    • Chan YC, Blaschek HP. 2005. Comparative analysis of Shigella boydii 18 foodborne outbreak isolate and related enteric bacteria: role of rpoS and adiA in acid stress response. J. Food Prot. 68:521-527.
    • (2005) J. Food Prot , vol.68 , pp. 521-527
    • Chan, Y.C.1    Blaschek, H.P.2
  • 11
    • 33645827531 scopus 로고    scopus 로고
    • Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach
    • Chen SL, Hung C-S, Xu J, et al. 2006. Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. USA 103:5977-5982.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 5977-5982
    • Chen, S.L.1    Hung, C.-S.2    Xu, J.3
  • 12
    • 20444379927 scopus 로고    scopus 로고
    • Presence of GadD1 glutamate decarboxylase in selected Listeria monocytogenes strains is associated with an ability to grow at low pH
    • Cotter PD, Ryan S, Gahan CGM, et al. 2005. Presence of GadD1 glutamate decarboxylase in selected Listeria monocytogenes strains is associated with an ability to grow at low pH. Appl. Environ. Microbiol. 71:2832-2839.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 2832-2839
    • Cotter, P.D.1    Ryan, S.2    Gahan, C.G.M.3
  • 14
    • 0002191544 scopus 로고    scopus 로고
    • Microbial responses to acid stress
    • Storz G, Hengge-Aronis R, eds, Washington, DC: ASM Press, pp
    • Foster JW. 2000. Microbial responses to acid stress. In: Storz G, Hengge-Aronis R, eds. Bacterial Stress Responses. Washington, DC: ASM Press, pp. 99-115.
    • (2000) Bacterial Stress Responses , pp. 99-115
    • Foster, J.W.1
  • 15
    • 9444285788 scopus 로고    scopus 로고
    • Escherichia coli acid resistance: Tales of an amateur acidophile
    • Foster JW. 2004. Escherichia coli acid resistance: tales of an amateur acidophile. Nat. Rev. Microbiol. 2:898-907.
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 898-907
    • Foster, J.W.1
  • 16
    • 0028844116 scopus 로고
    • How Salmonella survive against the odds
    • Foster JW, Spector MP. 1995. How Salmonella survive against the odds. Annu. Rev. Microbiol. 49:145-174.
    • (1995) Annu. Rev. Microbiol , vol.49 , pp. 145-174
    • Foster, J.W.1    Spector, M.P.2
  • 17
    • 20444471048 scopus 로고    scopus 로고
    • Gastrointestinal phase of Listeria monocytogenes infection
    • Gahan CGM, Hill C. 2005. Gastrointestinal phase of Listeria monocytogenes infection. J. Appl. Bacteriol. 98:1345-1353.
    • (2005) J. Appl. Bacteriol , vol.98 , pp. 1345-1353
    • Gahan, C.G.M.1    Hill, C.2
  • 18
    • 33746613287 scopus 로고    scopus 로고
    • Arginine-dependent acid resistance in Salmonella enterica serovar Typhimurium
    • Kieboom J, Abee T. 2006. Arginine-dependent acid resistance in Salmonella enterica serovar Typhimurium. J. Bacteriol. 188:5650-5653.
    • (2006) J. Bacteriol , vol.188 , pp. 5650-5653
    • Kieboom, J.1    Abee, T.2
  • 19
    • 49949106331 scopus 로고    scopus 로고
    • Klimke W, Tatusova T. 2006. Microbial genomes at NCBI. In: Mulder N, ed. In Silico Genomics and Proteomics: Functional Annotation of Genomes and Proteins. Hinxston, UK: Nova Publishers, pp. 157-183.
    • Klimke W, Tatusova T. 2006. Microbial genomes at NCBI. In: Mulder N, ed. In Silico Genomics and Proteomics: Functional Annotation of Genomes and Proteins. Hinxston, UK: Nova Publishers, pp. 157-183.
  • 20
    • 0018148992 scopus 로고
    • Escherichia coli strains that cause diarrhoea but do not produce heat-labile or heat-stable enterotoxins and are non-invasive
    • Levine MM, Bergquist EJ, Nalin DR, et al. 1978. Escherichia coli strains that cause diarrhoea but do not produce heat-labile or heat-stable enterotoxins and are non-invasive. Lancet 1(8074):1119-1122.
    • (1978) Lancet 1 , vol.8074 , pp. 1119-1122
    • Levine, M.M.1    Bergquist, E.J.2    Nalin, D.R.3
  • 21
    • 0029073161 scopus 로고
    • Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli
    • Lin J, Lee IS, Frey J, et al. 1995. Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli. J. Bacteriol. 177:4097-4104.
    • (1995) J. Bacteriol , vol.177 , pp. 4097-4104
    • Lin, J.1    Lee, I.S.2    Frey, J.3
  • 22
    • 0029832195 scopus 로고    scopus 로고
    • Mechanisms of acid resistance in enterohemorrhagic Escherichia coli
    • Lin J, Smith MP, Chapin KC, et al. 1996. Mechanisms of acid resistance in enterohemorrhagic Escherichia coli. Appl. Environ. Microbiol. 62:3094-3100.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 3094-3100
    • Lin, J.1    Smith, M.P.2    Chapin, K.C.3
  • 23
    • 38549144166 scopus 로고    scopus 로고
    • The Genomes On Line Database (GOLD) in 2007: Status of genomic and metagenomic projects and their associated metadata
    • Liolios K, Mavromatis K, Tavernarakis N, et al. 2008. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 36:D475-D479.
    • (2008) Nucleic Acids Res , vol.36
    • Liolios, K.1    Mavromatis, K.2    Tavernarakis, N.3
  • 24
    • 42449105377 scopus 로고    scopus 로고
    • Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks
    • Manning SD, Motiwala AS, Springman AC, et al. 2008. Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks. Proc. Natl. Acad. Sci. USA 105:4868-4873.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 4868-4873
    • Manning, S.D.1    Motiwala, A.S.2    Springman, A.C.3
  • 25
    • 0035950154 scopus 로고    scopus 로고
    • Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
    • Parkhill J, Dougan G, James KD, et al. 2001. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413:848-852.
    • (2001) Nature , vol.413 , pp. 848-852
    • Parkhill, J.1    Dougan, G.2    James, K.D.3
  • 26
    • 0036791011 scopus 로고    scopus 로고
    • The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts
    • Paulsen IT, Seshadri R, Nelson KE, et al. 2002. The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts. Proc. Natl. Acad. Sci. USA 99:13148-13153.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 13148-13153
    • Paulsen, I.T.1    Seshadri, R.2    Nelson, K.E.3
  • 27
    • 4143061675 scopus 로고    scopus 로고
    • Acid resistance systems required for survival of Escherichia coli O157:H7 in the bovine gastrointestinal tract and in apple cider are different
    • Price SB, Wright JC, DeGraves FJ, et al. 2004. Acid resistance systems required for survival of Escherichia coli O157:H7 in the bovine gastrointestinal tract and in apple cider are different. Appl. Environ. Microbiol. 70:4792-4799.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 4792-4799
    • Price, S.B.1    Wright, J.C.2    DeGraves, F.J.3
  • 28
    • 33846057724 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T, Maglott DR. 2007. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 35:61-65.
    • (2007) Nucleic Acids Res , vol.35 , pp. 61-65
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 29
    • 33746031441 scopus 로고    scopus 로고
    • Isolation and characterization of Listeria monocytogenes isolates from ready-to-eat foods in Florida
    • Shen Y, Liu Y, Zhang Y, et al. 2006. Isolation and characterization of Listeria monocytogenes isolates from ready-to-eat foods in Florida. Appl. Environ. Microbiol. 72:5073-5076.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 5073-5076
    • Shen, Y.1    Liu, Y.2    Zhang, Y.3
  • 30
    • 0000060960 scopus 로고    scopus 로고
    • pH-regulated genes and survival at acidic pH
    • Neidhardt FC, Curtiss III R, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE, eds, 2nd ed. Washington, DC: ASM Press, pp
    • Slonczewski JL, Foster JW. 1996. pH-regulated genes and survival at acidic pH. In: Neidhardt FC, Curtiss III R, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE, eds. Escherichia coli and Salmonella Cellular and Molecular Biology, 2nd ed. Washington, DC: ASM Press, pp. 1539-1549.
    • (1996) Escherichia coli and Salmonella Cellular and Molecular Biology , pp. 1539-1549
    • Slonczewski, J.L.1    Foster, J.W.2
  • 31
    • 0036790952 scopus 로고    scopus 로고
    • Comparative genome analysis of the alpha-proteobacteria: Relationships between plant and animal pathogens and host specificity
    • Tsolis RM. 2002. Comparative genome analysis of the alpha-proteobacteria: relationships between plant and animal pathogens and host specificity. Proc. Natl. Acad. Sci. USA 99:12503-12505.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12503-12505
    • Tsolis, R.M.1
  • 32
    • 38549092091 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Wheeler DL, Barrett T, Benson DA, et al. 2008. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 36:D13-D21.
    • (2008) Nucleic Acids Res , vol.36
    • Wheeler, D.L.1    Barrett, T.2    Benson, D.A.3
  • 33
    • 36549075971 scopus 로고    scopus 로고
    • BLAST quick start: Example-driven web-based BLAST
    • Bergman NH, ed, Totowan, NJ: Humana Press, pp
    • Wheeler DL, Bhagwat M. 2007. BLAST quick start: example-driven web-based BLAST. In: Bergman NH, ed. Methods in Molecular Biology: Comparative Genomics-I. Totowan, NJ: Humana Press, pp. 149-176.
    • (2007) Methods in Molecular Biology: Comparative Genomics-I , pp. 149-176
    • Wheeler, D.L.1    Bhagwat, M.2
  • 34
    • 34347333260 scopus 로고    scopus 로고
    • Genomics-based food-borne pathogen testing and diagnostics: Possibilities for the U.S. Department of Agriculture's Food Safety and Inspection Services
    • Withee J, Dearfield KL. 2007. Genomics-based food-borne pathogen testing and diagnostics: possibilities for the U.S. Department of Agriculture's Food Safety and Inspection Services. Environ. Mol. Mutagen. 48:363-368.
    • (2007) Environ. Mol. Mutagen , vol.48 , pp. 363-368
    • Withee, J.1    Dearfield, K.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.