Genomic matrix attachment region and chromosome conformation capture quantitative real time PCR assays identify novel putative regulatory elements at the imprinted Dlk1/Gtl2 locus

Journal of Biological Chemistry

Volumn 283, Issue 27, 2008, Pages 18612-18620

  Braem, Caroline ^a   Recolin, Bénédicte ^a   Rancourt, Rebecca C ^b   Angiolini, Christopher ^b   Barthès, Pauline ^a   Branchu, Priscillia ^a   Court, Franck ^a   Cathala, Guy ^a   Ferguson Smith, Anne C ^b   Forné, Thierry ^a  

^a INSTITUT DE GÉNÉTIQUE MOLÉCULAIRE DE MONTPELLIER   (France)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOACTIVITY; CHROMOSOMES; COSMIC RAYS; DNA SEQUENCES; GENE EXPRESSION; LAWS AND LEGISLATION; NUCLEIC ACIDS; ORGANIC ACIDS; PATIENT MONITORING;

DIFFERENTIAL FUNCTIONS; DO-MAINS; GENE REGULATIONS; GENOMIC IMPRINTINGS; GERM LINES; GROWTH FACTORS; INTRINSIC ACTIVITIES; MATRIX ATTACHMENT REGIONS; MOUSE LIVERS; NUCLEAR MATRIXES; PCR ASSAYS; REAL TIMES; REGULATORY ELEMENTS; SALT TREATMENTS;

TRANSCRIPTION;

ALLELE; ARTICLE; AT RICH SEQUENCE; CELL NUCLEUS MATRIX; CHROMOSOME; CONTROLLED STUDY; DLK1 GENE; DNA METHYLATION; GENE; GENE CONTROL; GENE EXPRESSION; GENETIC TRANSCRIPTION; GENOME IMPRINTING; GENOMICS; GERM LINE; GTL2 GENE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; ANIMAL; CELL CULTURE; GENETICS; GENOME; HUMAN; MATRIX ATTACHMENT REGION; MOUSE; PHYSIOLOGY; QUANTITATIVE TRAIT LOCUS;

DLK1 PROTEIN, MOUSE; GTL2 PROTEIN, MOUSE; IGF2 PROTEIN, MOUSE; PROTEIN; SIGNAL PEPTIDE; SOMATOMEDIN B;

ANIMALS; CELLS, CULTURED; CHROMOSOMES, MAMMALIAN; DNA METHYLATION; GENOME; GENOMIC IMPRINTING; HUMANS; INSULIN-LIKE GROWTH FACTOR II; INTERCELLULAR SIGNALING PEPTIDES AND PROTEINS; MATRIX ATTACHMENT REGIONS; MICE; PROMOTER REGIONS (GENETICS); PROTEINS; QUANTITATIVE TRAIT LOCI;

EID: 49649116680     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M801883200     Document Type: Article

References (33)

1. Purbowasito, W., Suda, C., Yokomine, T., Zubair, M., Sado, T., Tsutsui, K., and Sasaki, H. (2004) DNA Res. 11, 391-407
2. Weber, M., Hagège, H., Lutfalla, G., Dandolo, L., Brunel, C., Cathala, G., and Forné, T. (2003) Anal. Biochem. 320, 252-258
3. Weber, M., Hagège, H., Murrell, A., Brunel, C., Reik, W., Cathala, G., and Forné, T. (2003) Mol. Cell. Biol. 23, 8953-8959
4. Kono, T., Obata, Y., Wu, Q., Niwa, K., Ono, Y., Yamamoto, Y., Park, E. S., Seo, J. S., and Ogawa, H. (2004) Nature 428, 860-864
5. DaRocha, S. T., Tevendale, M., Knowles, E., Takada, S., Watkins, M., and Ferguson-Smith, A. C. (2007) Dev. Biol. 306, 810-823
6. Moon, Y. S., Smas, C. M., Lee, K., Villena, J. A., Kim, K. H., Yun, E. J., and Sul, H. S. (2002) Mol. Cell. Biol. 22, 5585-5592
7. Raghunandan, R., Ruiz-Hidalgo, M., Jia, Y., Ettinger, R., Rudikoff, E., Riggins, P., Farnsworth, R., Tesfaye, A., Laborda, J., and Bauer, S. (2008) Stem Cells 17, in press
8. Schmidt, J. V., Matteson, P. G., Jones, B. K., Guan, X. J., and Tilghman, S. M. (2000) Genes Dev. 14, 1997-2002
9. Takada, S., Tevendale, M., Baker, J., Georgiades, P., Campbell, E., Freeman, T., Johnson, M. H., Paulsen, M., and Ferguson-Smith, A. C. (2000) Curr. Biol. 10, 1135-1138
10. Davis, E., Caiment, F., Tordoir, X., Cavaille, J., Ferguson-Smith, A. C., Cockett, N., Georges, M., and Charlier, C. (2005) Curr. Biol. 15, 743-749
11. Schuster-Gossler, K., Bilinski, P., Sado, T., Ferguson-Smith, A. C., and Gossler, A. (1998) Dev. Dyn. 212, 214-228
12. Seitz, H., Youngson, N., Lin, S. P., Dalbert, S., Paulsen, M., Bachellerie, J. P., Ferguson-Smith, A. C., and Cavaillé, J. (2003) Nat. Genet. 34, 261-262
13. Tierling, S., Dalbert, S., Schoppenhorst, S., Tsai, C. E., Oliger, S., Ferguson-Smith, A. C., Paulsen, M., and Walter, J. (2006) Genomics 87, 225-235
14. Lin, S. P., Coan, P., da Rocha, S. T., Seitz, H., Cavaille, J., Teng, P. W., Takada, S., and Ferguson-Smith, A. C. (2007) Development 134, 417-426
15. Takada, S., Paulsen, M., Tevendale, M., Tsai, C. E., Kelsey, G., Cattanach, B. M., and Ferguson-Smith, A. C. (2002) Hum. Mol. Genet. 11, 77-86
16. Lin, S. P., Youngson, N., Takada, S., Seitz, H., Reik, W., Paulsen, M., Cavaillé, J., and Ferguson-Smith, A. C. (2003) Nat. Genet. 35, 97-102
17. Hagège, H., Klous, P., Braem, C., Splinter, E., Dekker, J., Cathala, G., de Laat, W., and Forné, T. (2007) Nat. Prot. 2, 1722-1733
18. Lutfalla, G., and Uzé, G. (2006) Methods Enzymol. 410, 386-400
19. Paulsen, M., Takada, S., Youngson, N. A., Benchaib, M., Charlier, C., Segers, K., Georges, M., and Ferguson-Smith, A. C. (2001) Genome Res. 11, 2085-2094
20. Ciejek, E. M., Tsai, M. J., and O'Malley, B. W. (1983) Nature 306, 607-609
21. Tolhuis, B., Palstra, R. J., Splinter, E., Grosveld, F., and de Laat, W. (2002) Mol. Cell. 10, 1453-1465
22. Cai, S., Lee, C. C., and Kohwi-Shigematsu, T. (2006) Nat. Genet. 38, 1278-1288
23. Kurukuti, S., Tiwari, V. K., Tavoosidana, G., Pugacheva, E., Murrell, A., Zhao, Z., Lobanenkov, V., Reik, W., and Ohlsson, R. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 10684-10689
24. Weber, M., Hagège, H., Aptel, N., Brunel, C., Cathala, G., and Forné, T. (2005) Prog. Mol. Subcell. Biol. 38, 207-236
25. Takeda, H., Caiment, F., Smit, M., Hiard, S., Tordoir, X., Cockett, N., Georges, M., and Charlier, C. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 8119-8124
26. Kanduri, C., Thakur, N., and Pandey, R. R. (2006) EMBO J. 25, 2096-2106
27. Mancini-Dinardo, D., Steele, S. J., Levorse, J. M., Ingram, R. S., and Tilghman, S. M. (2006) Genes Dev. 20, 1268-1282
28. Sleutels, F., Zwart, R., and Barlow, D. P. (2002) Nature 415, 810-813
29. Freking, B. A., Murphy, S. K., Wylie, A. A., Rhodes, S. J., Keele, J. W., Leymaster, K. A., Jirtle, R. L., and Smith, T. P. (2002) Genome Res. 12, 1496-1506
30. Murrell, A., Heeson, S., Bowden, L., Constancia, M., Dean, W., Kelsey, G., and Reik, W. (2001) EMBO Rep. 2, 1101-1106
31. Murrell, A., Heeson, S., and Reik, W. (2004) Nat. Genet. 36, 889-893
32. Milligan, L., Forné, T., Antoine, E., Weber, M., Hemonnot, B., Dandolo, L., Brunel, C., and Cathala, G. (2002) EMBO Rep. 3, 774-779
33. Smit, M., Segers, K., Carrascosa, L. G., Shay, T., Baraldi, F., Gyapay, F., Snowder, G., Georges, M., Cockett, M., and Charlier, C. (2003) Genetics 163, 453-456