Evaluating genetic structure among resident and migratory forms of bull trout (Salvelinus confluentus) in Northeast Oregon

Ecology of Freshwater Fish

Volumn 17, Issue 3, 2008, Pages 465-474

  Homel, K ^a   Budy, P ^b   Pfrender, M E ^b   Whitesel, T A ^c   Mock, K ^b  

^a MONTANA STATE UNIVERSITY   (United States)

^b UTAH STATE UNIVERSITY   (United States)

^c WA 98683   (United States)

Author keywords

Bull trout; Gene flow; Life history forms; Microsatellites; Salvelinus

Indexed keywords

SALMONIDAE; SALVELINUS; SALVELINUS CONFLUENTUS;

EID: 49649104273     PISSN: 09066691     EISSN: 16000633     Source Type: Journal    
DOI: 10.1111/j.1600-0633.2008.00299.x     Document Type: Article

References (69)

1. Al-Chokhachy, R. 2006. An Assessment of the Dynamics and Limiting Factors of a Fluvial Bull Trout Population. Ph.D. thesis. Logan, UT : Utah State University.
2. Al-Chokhachy, R., Budy, P. Schaller, H. 2005. Understanding the significance of redd counts: a comparison between two methods for estimating the abundance of and monitoring bull trout populations. North American Journal of Fisheries Management 25 : 1505 1512.
3. Angers, B., Bernatchez, L., Angers, A. Desgroseillers, L. 1995. Specific microsatellite loci for brook char reveal strong population subdivision on a microgeographic scale. Journal of Fish Biology 47 (Suppl. A) : 177 185.
4. Baxter, C.V. 2002 Fish Movement and Assemblage Dynamics in a Pacific Northwest Riverscape. Ph.D. thesis. Corvallis, Oregon : Oregon State University.
5. Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N. Bonhomme, F. 1996-2004. GENETIX 4.05, Logiciel Sous Windows TM Pour la Génétique des Populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, France : Université de Montpellier II, Montpellier.
6. Buchanan, D.V., Hanson, M.L. Hooton, R.M. 1997. Status of Oregon's Bull Trout. Portland, Oregon : Oregon Department of Fish and Wildlife.
7. Costello, A. B., Downs, T. E., Pollard, S. M., Pacas, C. J. Taylor, E. B. 2003. The influence of history and contemporary stream hydrology on the evolution of genetic diversity within species: an examination of microsatellite DNA variation in bull trout, Salvelinus confluentus (pisces: Salmonidae). Evolution 57 : 328 344.
8. Crane, P.A., Lewis, C.J., Kretschmer, E.J., Miller, S.J., Spearman, W.J., DeCicco, A.L., Lisac, M.J. Wenberg, J.K. 2004. Characterization and inheritance of seven microsatellite loci from Dolly Varden, Salvelinus malma, and cross-species amplification in Arctic char, S. alpinus. Conservation Genetics 5 : 737 741.
9. DeHaan, P.W. Ardren, W.R. 2005. Characterization of 20 highly variable tetranucleotide microsatellite loci for bull trout (Salvelinus confluentus) and cross amplification in other Salvelinus species. Molecular Ecology Notes 5 : 582 585.
10. Department of the Interior, U. S. Fish and Wildlife Service. 1999. Determination of Threatened Status for Bull Trout in the Coterminous United States; Final Rule Notice of Intent to Prepare a Proposed Special Rule Pursuant to Section 4(d) of the Endangered Species Act for the Bull Trout; Proposed Rule. Federal Register November 1, Vol. 64, No. 210. Rules and Regulations pg. 58909-58933. Office of the Federal Register, National Archives Records Administration, Washington D.C.
11. Dingle, H. 1996. Migration: The Biology of Life on the Move. Oxford, UK : Oxford University Press.
12. Docker, M.F. Heath, D.D. 2003. Genetic comparisons between sympatric anadromous steelhead and freshwater resident rainbow trout in British Columbia, Canada. Conservation Genetics 4 : 227 231.
13. Downs, C.C., Horan, D., Morgan-Harris, E. Jakubrowski, R. 2006. Spawning Demographics and Juvenile Dispersal of an Adfluvial Bull Trout Population in Trestle Creek, Idaho. North American Journal of Fisheries Management 26 : 190 200.
14. Dunham, J., Peacock, M., Tracy, C.R., Nielsen, J. Vinyard, G. 1999. Assessing extinction risk: integrating genetic information. Conservation Ecology [online] 3(1) : 2 Available from the Internet. URL: http://www. ecologyandsociety.org/vol3/iss1/art2/
15. Dunham, J., Young, M.K., Gresswell, R.E. Rieman, B.E. 2003. Effects of fire on fish populations: landscape perspectives on persistence of native fishes and nonnative fish invasions. Forest Ecology and Management 178 : 183 196
16. Foote, C.J. 1989. Female mate preference in Pacific salmon. Animal Behaviour 38 : 721 723.
17. Foote, C.J., Wood, C.C. Withler, R.E. 1989. Biochemical genetic comparison of sockeye salmon and kokanee, the anadromous and nonanadromous forms of Oncorhynchus nerka. Behavior 106 : 43 62.
18. Fraley, J. J. Shepard, B. B. 1989. Life history, ecology and population status of migratory bull trout (Salvelinus confluentus) in the Flathead Lake and River system, Montana. Northwest Science 63 : 133 143.
19. Groot, C. Margolis, L. 1991. Pacific Salmon Life Histories. Vancouver, B.C., Canada : UBC Press.
20. Gross, M.R. 1991. Salmon breeding behavior and life history evolution in changing environments. Ecology 72 : 1180 1186.
21. Hendry, A.P., Wenburg, J.K., Bentzen, P., Volk, E.C. Quinn, T.P. 2000. Rapid evolution of reproductive isolation in the wild: evidence from introduced salmon. Science 290 : 516 518.
22. Jackson, D.A., Peres-Neto, P.R. Olden, J.D. 2001. What controls who is where in freshwater communities- the role of biotic, abiotic, and spatial factors. Canadian Journal of Fisheries and Aquatic Sciences 58 : 157 170.
23. Jakober, M.J., McMahon, T.E., Thurow, R.F. Clancy, C.G. 1998. Role of stream ice on fall and winter movements and habitat use by bull trout and cutthroat trout in Montana headwater streams. Transactions of the American Fisheries Society 127 : 223 235.
24. Jonsson, B. Jonsson, N. 1993. Partial migration: niche shift versus sexual maturation in fishes. Reviews in Fish Biology and Fisheries 3 : 348 365.
25. Kaitala, A., Kaitala, V. Lundberg, P. 1993. A theory of partial migration. The American Naturalist 142 : 59 81.
26. Kanda, N. Allendorf, F. W. 2001. Genetic population structure of bull trout from the Flathead River Basin as shown by microsatellites and mitochondrial DNA markers. Transactions of the American Fisheries Society 130 : 92 106.
27. Charles, K., Guyomard, R., Hoyheim, B., Ombredane, D. Baglinièr, J. 2005. Lack of genetic differentiation between anadromous and resident sympatric brown trout (Salmo trutta) in a Normandy population. Aquatic Living Resources 18 : 65 69.
28. Leary, R. F., Allendorf, F. W. Forbes, S. H. 1993. Conservation genetics of bull trout in the Columbia and Klamath River drainages. Conservation Biology 7 : 856 865
29. Leimar, O. 2005. The evolution of phenotypic polymorphism: randomized strategies versus evolutionary branching. The American Naturalist 165 : 669 681.
30. Lichatowich, J. 1999. Salmon Without Rivers: A History of the Pacific Salmon Crisis. Washington D.C. : Island Press.
31. Lynch, M., Pfrender, M.E., Spitze, K., Lehman, N., Allen, D., Hicks, J., Latta, L., Ottene, M., Bogues, F. Colbourne, J. 1999. The quantitative and molecular genetic architecture of a subdivided species. Evolution 53 : 100 110.
32. Maekawa, K., Nakano, S. Yamamoto, S. 1994. Spawning behaviour and size- assortative mating of Japanese charr in an artificial lake-inlet stream system. Environmental Biology of Fishes 39 : 109 117.
33. Mahoney, B. 2002. Walla Walla basin summer steelhead and bull trout radio telemetry project: 2002 Annual Report to the Bonneville Power Administration. Confederated Tribes of the Umatilla Indian Reservation, Milton-Freewater 2001. Anadromy and homing: two life history traits with adaptive synergy in salmonid fishes?. Fish and Fisheries 2 : 78 85.
34. McLaughlin, R.L. 2001. Behavioral diversification in brook charr: adaptive responses to local conditions. The Journal of Animal Ecology 70 : 325 337.
35. McPhail, J.D. Murray, C.B. 1979. The Early Life-History and Ecology of Dolly Varden (Salvelinus Malma) in the Upper Arrow Lakes. Vancouver, BC : University of British Columbia, Department of Zoology and Institute of Animal Resources. 113 P.
36. McPhee, M.V., Utter, F., Stanford, J.A., Kuzishchin, K.V., Savvaitova, K.A., Pavlov, D.S. Allendorf, F.W. 2007. Population structure and partial anadromy in Oncorhynchus mykiss from Kamchatka: relevance for conservation strategies around the Pacific Rim. Ecology of Freshwater Fish 16 : 539 547.
37. Narum, S. R., Contor, C., Talbot, A. Powell, M. S. 2004. Genetic divergence of sympatric resident and anadromous forms of Oncorhynchus mykiss in the Walla Walla River, U.S.A. Journal of Fish Biology 65 : 471 488.
38. Neraas, L. P. Spruell, P. 2001. Fragmentation of riverine systems: the genetic effects of dams on bull trout (Salvelinus confluentus) in the Clark Fork River system. Molecular Ecology 10 : 1153 1164.
39. Nordeng, H. 1983. Solution to the "char problem" based on Arctic char (Salvelinus alpinus) in Norway. Canadian Journal of Fisheries and Aquatic Sciences 40 : 1372 1387.
40. Northcote, R.G. 1992. Migration and residency in stream salmonids- some ecological considerations and evolutionary consequences. Nordic Journal of Freshwater Research 67 : 5 17.
41. Olsson, I.C., Greenberg, L. A., Bergman, E. Wysujack, K. 2006. Environmentally induced migration: the importance of food. Ecology Letters 9 : 645 651.
42. Osinov, A.G. 1984. Zoogeographical origins of brown trout, Salmo trutta (Salmonidae): data from biochemical genetic markers. Journal of Ichthyology 24 : 10 23.
43. Pfrender, M.E., Spitze, K., Hicks, J., Morgan, K., Latta, L. Lynch, M. 2000. Lack of concordance between genetic diversity estimates at the molecular and quantitative-trait levels. Conservation Genetics 1 : 263 269.
44. Pigeon, D., Chouinard, A. Bernatchez, L. 2006. Multiple modes of speciation involved in the parallel evolution of sympatric morphotypes of lake whitefish (Coregonus clupeaformis, Salmonidae). Evolution 51 : 196 205.
45. Pritchard, J. K., Stephens, M. Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics 155 : 945 959.
46. Raymond, M. Rousset, F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86 : 248 249. GENEPOP on the web version 3.4 stable URL: http://wbiomed.curtin.edu.au/genepop/
47. Reiss, Y. 2003. Genetic Variability Within Bull Trout (Salvelinus Confluentus) Populations in the Yakima River Basin. Masters thesis, Washington : Central Washington University.
48. Rice, W.R. Hostert, E.E. 1993. Laboratory experiments on speciation: What have we learned in 40 years? Evolution 47 : 1637 1653.
49. Rieman, B.E. Dunham, J.B. 2000. Metapopulations and salmonids: a synthesis of life history patterns and empirical observations. Ecology of Freshwater Fish 9 : 51 64.
50. Rieman, B.E. McIntyre, J.D. 1993. Demographic and Habitat Requirements for Conservation of Bull Trout. General Technical Report INT-302. U.S. Forest Service, Intermountain Research Station, Ogden, UT.
51. Shaklee, J. 2003. In Washington Department of Fish and Wildlife Annual Report 2003 : 191 207. Longview, WA. Sequences available online at stable URL: http://www.usbr.gov/pn/programs/srao_misc/bulltrout/reports/2003-annualreport- burnspaiute.pdf
52. Shepard, B., Pratt, K. Graham, P. 1984. Life Histories of Westslope Cutthroat and Bull Trout in the Upper Flathead River Basin, Montana. Kalispell, MT : Montana Department of Fish, Wildlife, and Parks. 85 pp.
53. Skulason, S., Snorrason, S.S., Noakes, D.L.G. Ferguson, M.M. 1996. Genetic basis of life history variations among sympatric morphs of Arctic char, Salvelinus alpinus. Canadian Journal of Fisheries and Aquatic Sciences 53 : 1807 1813.
54. Smith, J.M. 1970. Genetic polymorphism in a varied environment. The American Naturalist 104 : 487 490.
55. Spruell, P., Rieman, B.E., Knudsen, K.L., Utter, F.M. Allendorf, F.W. 1999. Genetic population structure within streams: microsatellite analysis of bull trout populations. Ecology of Freshwater Fish 8 : 114 121.
56. Spruell, P., Hemmingsen, A. R., Howell, P. J., Kanda, N. Allendorf, F. W. 2003. Conservation genetics of bull trout: geographic distribution at microsatellite loci. Conservation Genetics 4 : 17 29.
57. Sunnucks, P. Hales, D.F. 1996. Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobium (Hemiptera: Aphididae). Molecular Biology and Evolution 13 : 510 524.
58. Swanberg, T.R. 1997. Movements of and habitat use by fluvial bull trout in the Blackfoot River, Montana. Transactions of the American Fisheries Society 126 : 735 746.
59. Taylor, E.B., Foote, C.J. Wood, C.C. 1996. Molecular genetic evidence for parallel life history evolution within a Pacific salmon (sockeye salmon and kokanee, Oncorhynchus nerka). Evolution 50 : 401 416.
60. Taylor, E.B., Pollard, S. Louie, D. 1999. Mitochondrial DNA variation in bull trout (Salvelinus confluentus) from northwestern North America: implications for zoogeography and conservation. Molecular Ecology 8 : 1155 1170.
61. Theriault, V., Bernatchez, L. Dodson, J. J. 2007. Mating system and individual reproductive success of sympatric anadromous and resident brook charr, Salvelinus fontinalis, under natural conditions. Behavioral Ecology and Sociobiology 62 : 51 65.
62. USFWS. 2002. Draft Bull Trout Recovery Plans for the Columbia and Klamath Basins, and the Coastal-Puget Sound. Chapter 1, page v of Executive Summary Region 1, US Fish and Wildlife Service, Portland, Oregon.
63. USFWS (U.S. Fish and Wildlife Service) 2004. Bull Trout Recovery Plan- Chapter 10. Region 1, US Fish and Wildlife Service, Portland, Oregon. Available online at stable URL: http://www.fws.gov/pacific/bulltrout/colkla/recovery/ Default.htm
64. WDFW (Washington Department of Fish and Wildlife). 1997. 1997 Washington salmonid stock inventory. Appendix: bull trout and Dolly Varden. Washington Department of Fish and Wildlife, Olympia, Washington.
65. Westgaard, J.I., Klemetsen, A. Knudson, R. 2004. Genetic differences between two sympatric morphs of Arctic Charr confirmed by microsatellite DNA. Journal of Fish Biology 65 : 1185 1191.
66. Whiteley, A.R., Spruell, P., Rieman, B.E. Allendorf, F.W. 2006. Fine-scale genetic structure of bull trout at the southern limit of their distribution. Transactions of the American Fisheries Society 135 : 1238 1253.
67. Wofford, J.E.B., Gresswell, R.E. Banks, M.A. 2005. Influence of barriers to movement on within-watershed genetic variation of coastal cutthroat trout. Ecological Applications 15 : 628 637.
68. Wood, C.C. Foote, C.J. 1996. Evidence for sympatric genetic divergence of anadromous and nonanadromous morphs of sockeye salmon (Oncorhynchus nerka). Evolution 50 : 1265 1279.
69. Zimmerman, C. E. Reeves, G. H. 2000. Population structure of sympatric anadromous and nonanadromous Oncorhynchus mykiss: evidence from spawning surveys and otolith microchemistry. Canadian Journal of Fisheries and Aquatic Sciences 57 : 2152 2162.