메뉴 건너뛰기




Volumn 24, Issue 16, 2008, Pages 1805-1811

Systematic biological prioritization after a genome-wide association study: An application to nicotine dependence

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; CONFERENCE PAPER; CONTROLLED STUDY; GENE FUNCTION; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENETIC LINKAGE; GENOMICS; GENOTYPE PHENOTYPE CORRELATION; HUMAN; MATHEMATICAL COMPUTING; MICROARRAY ANALYSIS; NUCLEOTIDE SEQUENCE; POPULATION GENETICS; PRIORITY JOURNAL; SENSITIVITY ANALYSIS; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; TOBACCO DEPENDENCE;

EID: 49549111404     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn315     Document Type: Conference Paper
Times cited : (63)

References (38)
  • 1
    • 33645104470 scopus 로고    scopus 로고
    • SUSPECTS: Enabling fast and effective prioritization of positional candidates
    • Adie,E.A. et al. (2006) SUSPECTS: Enabling fast and effective prioritization of positional candidates. Bioinformatics, 22, 773-774.
    • (2006) Bioinformatics , vol.22 , pp. 773-774
    • Adie, E.A.1
  • 2
    • 34047182529 scopus 로고    scopus 로고
    • PharmGKB: A logical home for knowledge relating genotype to drug response phenotype
    • Altman,R.B. (2007) PharmGKB: A logical home for knowledge relating genotype to drug response phenotype. Nat. Genet., 39, 426.
    • (2007) Nat. Genet , vol.39 , pp. 426
    • Altman, R.B.1
  • 3
    • 42649091460 scopus 로고    scopus 로고
    • Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1
    • Amos,C.I. et al. (2008) Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1. Nat. Genet., 40, 616-622.
    • (2008) Nat. Genet , vol.40 , pp. 616-622
    • Amos, C.I.1
  • 4
    • 27744493624 scopus 로고    scopus 로고
    • KEGG-based pathway visualization tool for complex omics data
    • Arakawa,K. et al. (2005) KEGG-based pathway visualization tool for complex omics data. In Silico Biol., 5, 419-423.
    • (2005) In Silico Biol , vol.5 , pp. 419-423
    • Arakawa, K.1
  • 5
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett,J.C. et al. (2005) Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics, 21, 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1
  • 6
    • 40849097777 scopus 로고    scopus 로고
    • alpha-5/alpha-3 nicotinic receptor subunit alleles increase risk for heavy smoking
    • Berrettini,W. et al. (2008) alpha-5/alpha-3 nicotinic receptor subunit alleles increase risk for heavy smoking. Mol. Psychiatry, 13, 368-373.
    • (2008) Mol. Psychiatry , vol.13 , pp. 368-373
    • Berrettini, W.1
  • 7
    • 33846536406 scopus 로고    scopus 로고
    • Novel genes identified in a high-density genome wide association study for nicotine dependence
    • Bierut,L.J. et al. (2007) Novel genes identified in a high-density genome wide association study for nicotine dependence. Hum. Mol. Genet., 16, 24-35.
    • (2007) Hum. Mol. Genet , vol.16 , pp. 24-35
    • Bierut, L.J.1
  • 8
    • 85142157382 scopus 로고    scopus 로고
    • Bierut,L.J. et al. (2008) Variants in nicotinic receptors and risk for nicotine dependence. Am. J. Psychiatry, (published online Dec 1, 2007; doi:2010.1176/appi.ajp.2007.01234567).
    • Bierut,L.J. et al. (2008) Variants in nicotinic receptors and risk for nicotine dependence. Am. J. Psychiatry, (published online Dec 1, 2007; doi:2010.1176/appi.ajp.2007.01234567).
  • 9
    • 0032479079 scopus 로고    scopus 로고
    • Going the distance: A current view of enhancer action
    • Blackwood,E.M. et al. (1998) Going the distance: A current view of enhancer action. Science, 281, 60-63.
    • (1998) Science , vol.281 , pp. 60-63
    • Blackwood, E.M.1
  • 10
    • 34249997024 scopus 로고    scopus 로고
    • Replicating genotype-phenotype associations
    • Chanock,S.J. et al. (2007) Replicating genotype-phenotype associations. Nature, 447, 655-660.
    • (2007) Nature , vol.447 , pp. 655-660
    • Chanock, S.J.1
  • 11
    • 34547788766 scopus 로고    scopus 로고
    • Enriching the analysis of genomewide association studies with hierarchical modeling
    • Chen,G.K. et al. (2007) Enriching the analysis of genomewide association studies with hierarchical modeling. Am. J. Hum. Genet. 81.
    • (2007) Am. J. Hum. Genet , vol.81
    • Chen, G.K.1
  • 12
    • 0030759333 scopus 로고    scopus 로고
    • Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: The dense alignment surface method
    • Cserzo,M. et al. (1997) Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: The dense alignment surface method. Protein Eng., 10, 673-676.
    • (1997) Protein Eng , vol.10 , pp. 673-676
    • Cserzo, M.1
  • 13
    • 34249676425 scopus 로고    scopus 로고
    • A pragmatic suggestion for dealing with results for candidate genes obtained from genome wide association studies
    • Curtis,D. et al. (2007) A pragmatic suggestion for dealing with results for candidate genes obtained from genome wide association studies. BMC Genet., 8, 20.
    • (2007) BMC Genet , vol.8 , pp. 20
    • Curtis, D.1
  • 14
    • 34249850089 scopus 로고    scopus 로고
    • A computational system to select candidate genes for complex human traits
    • Gaulton,K.J. et al. (2007) A computational system to select candidate genes for complex human traits. Bioinformatics, 23 1132-1140.
    • (2007) Bioinformatics , vol.23 , pp. 1132-1140
    • Gaulton, K.J.1
  • 15
    • 0346801873 scopus 로고    scopus 로고
    • The gene ontology (GO) database and informatics resource
    • Harris,M.A. et al. (2004) The gene ontology (GO) database and informatics resource. Nucleic Acids Res., 32, D258-D261.
    • (2004) Nucleic Acids Res , vol.32
    • Harris, M.A.1
  • 16
    • 41649103682 scopus 로고    scopus 로고
    • A susceptiblity locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25
    • Hung,R.J. et al. (2008) A susceptiblity locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25. Nature 452, 633-637.
    • (2008) Nature , vol.452 , pp. 633-637
    • Hung, R.J.1
  • 17
    • 33846071416 scopus 로고    scopus 로고
    • PolyDoms: A whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease
    • Jegga,A.G. et al. (2007) PolyDoms: A whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease. Nucleic Acids Res., 35, D700-D706.
    • (2007) Nucleic Acids Res , vol.35
    • Jegga, A.G.1
  • 18
    • 34547765932 scopus 로고    scopus 로고
    • Sequence-based prioritization of nonsynonymous single-nucleotide polymorphisms for the study of disease mutations
    • Jiang,R. et al. (2007) Sequence-based prioritization of nonsynonymous single-nucleotide polymorphisms for the study of disease mutations. Am. J. Hum. Genet., 81, 346-360.
    • (2007) Am. J. Hum. Genet , vol.81 , pp. 346-360
    • Jiang, R.1
  • 19
    • 0345863935 scopus 로고    scopus 로고
    • The KEGG resource for deciphering the genome
    • Kanehisa,M. et al. (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res., 32, D277-D280.
    • (2004) Nucleic Acids Res , vol.32
    • Kanehisa, M.1
  • 20
    • 27244436714 scopus 로고    scopus 로고
    • Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
    • Karp,P.D. et al. (2005) Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res., 33 6083-6089.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6083-6089
    • Karp, P.D.1
  • 21
    • 38549158538 scopus 로고    scopus 로고
    • F-SNP: Computationally predicted functional SNPs for disease association studies
    • Lee,P.H. et al. (2007) F-SNP: Computationally predicted functional SNPs for disease association studies. Nucleic Acids Res., 36 D820-D824.
    • (2007) Nucleic Acids Res , vol.36
    • Lee, P.H.1
  • 22
    • 38049023107 scopus 로고    scopus 로고
    • Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation
    • Lewinger,J.P. et al. (2007) Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation. Genet. Epidemiol., 31, 871-882.
    • (2007) Genet. Epidemiol , vol.31 , pp. 871-882
    • Lewinger, J.P.1
  • 23
    • 33845898164 scopus 로고    scopus 로고
    • ECRbase: Database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes
    • Loots,G. and Orcharenko,I. (2007) ECRbase: Database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes. Bioinformatics, 23, 122-124.
    • (2007) Bioinformatics , vol.23 , pp. 122-124
    • Loots, G.1    Orcharenko, I.2
  • 24
    • 38849203273 scopus 로고    scopus 로고
    • TOM: Enhancement and extension of a tool suite for in silico approaches to multigenic complex disorders
    • Masotti,D. et al. (2007) TOM: Enhancement and extension of a tool suite for in silico approaches to multigenic complex disorders. Bioinformatics, 24, 428-429.
    • (2007) Bioinformatics , vol.24 , pp. 428-429
    • Masotti, D.1
  • 25
    • 33846067524 scopus 로고    scopus 로고
    • PANTHER version 6: Protein sequence and function evolution data with expanded representation of biological pathways
    • Mi,H. et al. (2007) PANTHER version 6: Protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Res., 35, D247-D252.
    • (2007) Nucleic Acids Res , vol.35
    • Mi, H.1
  • 26
    • 31544449191 scopus 로고    scopus 로고
    • Using linkage genome scans to improve power of association in genome scans
    • Roeder,K. et al. (2006) Using linkage genome scans to improve power of association in genome scans. Am. J. Hum. Genet., 78 243-252.
    • (2006) Am. J. Hum. Genet , vol.78 , pp. 243-252
    • Roeder, K.1
  • 27
    • 33846510020 scopus 로고    scopus 로고
    • Cholinergic nicotinic receptor genes implicated in a nicotine dependence association study targeting 348 candidate genes with 3713 SNPs
    • Saccone,S.F. et al. (2007a) Cholinergic nicotinic receptor genes implicated in a nicotine dependence association study targeting 348 candidate genes with 3713 SNPs. Hum. Mol. Genet., 16, 36-49.
    • (2007) Hum. Mol. Genet , vol.16 , pp. 36-49
    • Saccone, S.F.1
  • 28
    • 34247553633 scopus 로고    scopus 로고
    • Genetic linkage to chromosome 22q12 for a heavy-smoking quantitative trait in two independent samples
    • Saccone,S.F. et al. (2007b) Genetic linkage to chromosome 22q12 for a heavy-smoking quantitative trait in two independent samples. Am. J. Hum. Genet. 80, 856-866.
    • (2007) Am. J. Hum. Genet , vol.80 , pp. 856-866
    • Saccone, S.F.1
  • 29
    • 34249888775 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels
    • Saxena,R. et al. (2007) Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels. Science 316, 1331-1336.
    • (2007) Science , vol.316 , pp. 1331-1336
    • Saxena, R.1
  • 30
    • 16844369571 scopus 로고    scopus 로고
    • The need for a systematic approach to complex pathways in molecular epidemiology
    • Thomas,D.C. (2005) The need for a systematic approach to complex pathways in molecular epidemiology. Cancer Epidemiol. Biomarkers Prev., 14, 557-559.
    • (2005) Cancer Epidemiol. Biomarkers Prev , vol.14 , pp. 557-559
    • Thomas, D.C.1
  • 31
    • 33646234965 scopus 로고    scopus 로고
    • Are we ready for genome-wide association studies?
    • Thomas,D.C. (2006a) Are we ready for genome-wide association studies? Cancer Epidemiol. Biomarkers Prev. 15, 595-598.
    • (2006) Cancer Epidemiol. Biomarkers Prev , vol.15 , pp. 595-598
    • Thomas, D.C.1
  • 32
    • 33747119698 scopus 로고    scopus 로고
    • High-volume "-omics" technologies and the future of molecular epidemiology
    • Thomas,D.C. (2006b) High-volume "-omics" technologies and the future of molecular epidemiology. Epidemiology, 17, 490-491.
    • (2006) Epidemiology , vol.17 , pp. 490-491
    • Thomas, D.C.1
  • 33
    • 41649103052 scopus 로고    scopus 로고
    • A variant associated with nicotine dependence, lung cancer and peripheral arterial disease
    • Thorgeirsson,T.E. et al. (2008) A variant associated with nicotine dependence, lung cancer and peripheral arterial disease. Nature, 452, 638-642.
    • (2008) Nature , vol.452 , pp. 638-642
    • Thorgeirsson, T.E.1
  • 34
    • 34250191844 scopus 로고    scopus 로고
    • Reactome: A knowledge base of biologic pathways and processes
    • Vastrik,I. et al. (2007) Reactome: A knowledge base of biologic pathways and processes. Genome Biol., 8, R39.
    • (2007) Genome Biol , vol.8
    • Vastrik, I.1
  • 35
    • 33846086800 scopus 로고    scopus 로고
    • recent developments in the integration and prediction of protein interactions
    • STRING 7
    • van Mering,C. et al. (2007) STRING 7-recent developments in the integration and prediction of protein interactions. Nucleic Acids Res., 35, D358-D362.
    • (2007) Nucleic Acids Res , vol.35
    • van Mering, C.1
  • 36
    • 30444460720 scopus 로고    scopus 로고
    • Global landscape of recent inferred Darwinian selection for Homo sapiens
    • Wang,E.T. et al. (2006) Global landscape of recent inferred Darwinian selection for Homo sapiens. Proc. Natl Acad. Sci. USA, 103, 135-140.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 135-140
    • Wang, E.T.1
  • 37
    • 33747832183 scopus 로고    scopus 로고
    • FASTSNP: An always up-to-date and extendable service for SNP function analysis and prioritization
    • Yuan,H.Y. et al. (2006) FASTSNP: An always up-to-date and extendable service for SNP function analysis and prioritization. Nucleic Acids Res., 34, W635-W641.
    • (2006) Nucleic Acids Res , vol.34
    • Yuan, H.Y.1
  • 38
    • 0029616734 scopus 로고
    • Cystic fibrosis: Genotypic and phenotypic variations
    • Zielenski,J. et al. (1995) Cystic fibrosis: Genotypic and phenotypic variations. Annu. Rev. Genet., 29, 777-807.
    • (1995) Annu. Rev. Genet , vol.29 , pp. 777-807
    • Zielenski, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.