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Volumn 42, Issue 4, 2008, Pages 543-553

Comparative analysis of variable regions in the variola virus genome

Author keywords

Genetic divergence; Phylogenetic analysis; Recombination; Sequencing; Variola virus

Indexed keywords

VARIOLA VIRUS;

EID: 49549111399     PISSN: 00268933     EISSN: 16083245     Source Type: Journal    
DOI: 10.1134/S0026893308040092     Document Type: Article
Times cited : (8)

References (30)
  • 2
    • 33645095692 scopus 로고    scopus 로고
    • Poxviruses: Past, present and future
    • E.J. Lefkowitz C. Wang C. Upton 2006 Poxviruses: Past, present and future Virus Res. 117 105 118
    • (2006) Virus Res. , vol.117 , pp. 105-118
    • Lefkowitz, E.J.1    Wang, C.2    Upton, C.3
  • 6
    • 6944255646 scopus 로고    scopus 로고
    • Comparative restriction enzyme analysis of the genome in variola virus strains from the Russian collection
    • I.N. Babkina I.V. Babkin S.S. Marennikova L.S. Sandakhchiev S.N. Shchelkunov 2004 Comparative restriction enzyme analysis of the genome in variola virus strains from the Russian collection Mol. Biol. 38 429 436
    • (2004) Mol. Biol. , vol.38 , pp. 429-436
    • Babkina, I.N.1    Babkin, I.V.2    Marennikova, S.S.3    Sandakhchiev, L.S.4    Shchelkunov, S.N.5
  • 8
    • 0027463701 scopus 로고
    • Genes of variola and vaccinia viruses needed for overcoming of the host protective mechanisms
    • S.N. Shchelkunov V.M. Blinov L.S. Sandakhchiev 1993 Genes of variola and vaccinia viruses needed for overcoming of the host protective mechanisms FEBS Lett. 319 80 83
    • (1993) FEBS Lett. , vol.319 , pp. 80-83
    • Shchelkunov, S.N.1    Blinov, V.M.2    Sandakhchiev, L.S.3
  • 9
    • 0028940721 scopus 로고
    • Comparison of the genome DNA sequences of Bangladesh-1975 and India-1967 variola viruses
    • S.N. Shchelkunov R.F. Massung J.J. Esposito 1995 Comparison of the genome DNA sequences of Bangladesh-1975 and India-1967 variola viruses Virus Res. 36 107 118
    • (1995) Virus Res. , vol.36 , pp. 107-118
    • Shchelkunov, S.N.1    Massung, R.F.2    Esposito, J.J.3
  • 10
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • T.A. Hall 1999 BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids. Symp. Ser. 41 95 98
    • (1999) Nucleic Acids. Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 11
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • J.D. Thompson T.J. Gibson F. Plewniak F. Jeanmougin D.G. Higgins 1997 The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 4876 4882
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 12
    • 0030776127 scopus 로고    scopus 로고
    • Maximum likelihood estimation of phylogeny using stratigraphic data
    • J.P. Huelsenbeck B. Rannala 1997 Maximum likelihood estimation of phylogeny using stratigraphic data Paleobiology. 23 174 180
    • (1997) Paleobiology. , vol.23 , pp. 174-180
    • Huelsenbeck, J.P.1    Rannala, B.2
  • 13
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • D. Posada K.A. Crandall 1998 MODELTEST: Testing the model of DNA substitution Bioinformatics. 14 817 818
    • (1998) Bioinformatics. , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 14
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • R.D. Page 1996 TreeView: An application to display phylogenetic trees on personal computers Comput. Appl. Biosci. 12 357 358
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 15
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • S. Kumar K. Tamura M. Nei 2004 MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment Brief. Bioinform. 5 150 163
    • (2004) Brief. Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 16
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • M. Kimura 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences J. Mol. Evol. 16 111 120
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 18
    • 0025288969 scopus 로고
    • A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data
    • M. Nei J.C. Miller 1990 A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data Genetics. 125 873 879
    • (1990) Genetics. , vol.125 , pp. 873-879
    • Nei, M.1    Miller, J.C.2
  • 19
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • R.R. Hudson N.L. Kaplan 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences Genetics. 111 147 164
    • (1985) Genetics. , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 20
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • T. Bruen H. Philippe D. Bryant 2005 A simple and robust statistical test for detecting the presence of recombination Genetics. 172 2665 2681
    • (2005) Genetics. , vol.172 , pp. 2665-2681
    • Bruen, T.1    Philippe, H.2    Bryant, D.3
  • 21
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23, 254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 23
    • 0032502693 scopus 로고    scopus 로고
    • The genomic sequence analysis of the left and right species-specific terminal regions of a cowpox virus strain reveals unique sequences and a cluster of intact ORFs for immunomodulatory and host range proteins
    • S.N. Shchelkunov P.F. Safronov A.V. Totmenin N.A. Petrov O.I. Ryazankina V.V. Gutorov G.J. Kotwal 1998 The genomic sequence analysis of the left and right species-specific terminal regions of a cowpox virus strain reveals unique sequences and a cluster of intact ORFs for immunomodulatory and host range proteins Virology. 243 432 460
    • (1998) Virology. , vol.243 , pp. 432-460
    • Shchelkunov, S.N.1    Safronov, P.F.2    Totmenin, A.V.3    Petrov, N.A.4    Ryazankina, O.I.5    Gutorov, V.V.6    Kotwal, G.J.7
  • 26
    • 0028261194 scopus 로고
    • Effective amplification of long targets from cloned inserts and human genomic DNA
    • S. Cheng C. Fockler W.M. Barnes R. Higuchi 1994 Effective amplification of long targets from cloned inserts and human genomic DNA Proc. Natl. Acad. Sci. USA. 91 5695 5699
    • (1994) Proc. Natl. Acad. Sci. USA. , vol.91 , pp. 5695-5699
    • Cheng, S.1    Fockler, C.2    Barnes, W.M.3    Higuchi, R.4
  • 27
    • 33644991725 scopus 로고    scopus 로고
    • Time scale of poxvirus evolution
    • I.V. Babkin S.N. Shchelkunov 2006 Time scale of poxvirus evolution Mol. Biol. 40 20 24
    • (2006) Mol. Biol. , vol.40 , pp. 20-24
    • Babkin, I.V.1    Shchelkunov, S.N.2
  • 28
    • 0028988005 scopus 로고
    • Two types of deletions in orthopoxvirus genomes
    • S.N. Shchelkunov A.V. Totmenin 1995 Two types of deletions in orthopoxvirus genomes Virus Genes. 9 231 245
    • (1995) Virus Genes. , vol.9 , pp. 231-245
    • Shchelkunov, S.N.1    Totmenin, A.V.2
  • 29
    • 0036117562 scopus 로고    scopus 로고
    • Species-specific differences in organization of orthopoxvirus Kelch-like proteins
    • S.N. Shchelkunov A.V. Totmenin I.V. Kolosova 2002 Species-specific differences in organization of orthopoxvirus Kelch-like proteins Virus Genes. 24 157 162
    • (2002) Virus Genes. , vol.24 , pp. 157-162
    • Shchelkunov, S.N.1    Totmenin, A.V.2    Kolosova, I.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.