-
1
-
-
35648949836
-
Importance of metastable states in the free energy landscapes of polypeptide chains
-
Auer S., Miller M., Krivov S.V., Dobson C.M., Karplus M., and Vendruscolo M. Importance of metastable states in the free energy landscapes of polypeptide chains. Phys. Rev. Lett. 99 (2007) 178104
-
(2007)
Phys. Rev. Lett.
, vol.99
, pp. 178104
-
-
Auer, S.1
Miller, M.2
Krivov, S.V.3
Dobson, C.M.4
Karplus, M.5
Vendruscolo, M.6
-
2
-
-
33645159311
-
Geometry of proteins: hydrogen bonding, sterics, and marginally compact tubes
-
Banavar J.R., et al. Geometry of proteins: hydrogen bonding, sterics, and marginally compact tubes. Phys. Rev., E 73 (2006) 031921
-
(2006)
Phys. Rev., E
, vol.73
, pp. 031921
-
-
Banavar, J.R.1
-
3
-
-
10844225367
-
Principal eigenvector of contact matrices and hydrophobicity profiles in proteins
-
Bastolla U., Porto M., Roman H.E., and Vendruscolo M. Principal eigenvector of contact matrices and hydrophobicity profiles in proteins. Proteins 58 (2005) 22-30
-
(2005)
Proteins
, vol.58
, pp. 22-30
-
-
Bastolla, U.1
Porto, M.2
Roman, H.E.3
Vendruscolo, M.4
-
4
-
-
33748925566
-
A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the protein data bank
-
Bastolla U., Porto M., Roman H.E., and Vendruscolo M. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the protein data bank. BMC Evol. Biol. 6 (2006) 43
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 43
-
-
Bastolla, U.1
Porto, M.2
Roman, H.E.3
Vendruscolo, M.4
-
6
-
-
0042511005
-
A graph-theory algorithm for rapid protein side-chain prediction
-
Canutescu A.A., Shelenkov A.A., and Dunbrack Jr. R.L. A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci. 12 (2003) 2001-2014
-
(2003)
Protein Sci.
, vol.12
, pp. 2001-2014
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack Jr., R.L.3
-
7
-
-
34547237581
-
Fidelity of the protein structure reconstruction from inter-residue proximity constraints
-
Chen Y., Ding F., and Dokholyan N.V. Fidelity of the protein structure reconstruction from inter-residue proximity constraints. J. Phys. Chem., B 111 (2007) 7432-7438
-
(2007)
J. Phys. Chem., B
, vol.111
, pp. 7432-7438
-
-
Chen, Y.1
Ding, F.2
Dokholyan, N.V.3
-
8
-
-
2542617639
-
Geometry and symmetry presculpt the free-energy landscape of proteins
-
Hoang T.X., Trovato A., Seno F., Banavar J.R., and Maritan A. Geometry and symmetry presculpt the free-energy landscape of proteins. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 7960-7964
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 7960-7964
-
-
Hoang, T.X.1
Trovato, A.2
Seno, F.3
Banavar, J.R.4
Maritan, A.5
-
10
-
-
33744780638
-
Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks
-
Kinjo A.R., and Nishikawa K. Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks. Biophysics 1 (2005) 67-74
-
(2005)
Biophysics
, vol.1
, pp. 67-74
-
-
Kinjo, A.R.1
Nishikawa, K.2
-
11
-
-
33645299543
-
What determines the spectrum of protein native state structures?
-
Lezon T.R., Banavar J.R., Lesk A.M., and Maritan A. What determines the spectrum of protein native state structures?. Proteins 63 (2006) 273-277
-
(2006)
Proteins
, vol.63
, pp. 273-277
-
-
Lezon, T.R.1
Banavar, J.R.2
Lesk, A.M.3
Maritan, A.4
-
12
-
-
30344459116
-
Critical assessment of methods of protein structure prediction (CASP)-Round 6
-
Moult J., Fidelis K., Rost B., Hubbard T., and Tramontano A. Critical assessment of methods of protein structure prediction (CASP)-Round 6. Proteins 61 (2005) 3-7
-
(2005)
Proteins
, vol.61
, pp. 3-7
-
-
Moult, J.1
Fidelis, K.2
Rost, B.3
Hubbard, T.4
Tramontano, A.5
-
13
-
-
3142558004
-
Reconstruction of protein structures from a vectorial representation
-
Porto M., Bastolla U., Roman H.E., and Vendruscolo M. Reconstruction of protein structures from a vectorial representation. Phys. Rev. Lett. 92 (2004) 218101
-
(2004)
Phys. Rev. Lett.
, vol.92
, pp. 218101
-
-
Porto, M.1
Bastolla, U.2
Roman, H.E.3
Vendruscolo, M.4
-
15
-
-
27344449197
-
-
Schueler-Furman O., Wang C., Bradley P., Misura K., and Baker D. Science 310 (2005) 638-642
-
(2005)
Science
, vol.310
, pp. 638-642
-
-
Schueler-Furman, O.1
Wang, C.2
Bradley, P.3
Misura, K.4
Baker, D.5
-
16
-
-
0031585984
-
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
-
Simons K.T., Kooperberg C., Huang E., and Baker D. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J. Mol. Biol. 268 (1997) 209-225
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 209-225
-
-
Simons, K.T.1
Kooperberg, C.2
Huang, E.3
Baker, D.4
-
17
-
-
33845512710
-
Vectorial representation of single- and multi-domain protein folds
-
Teichert F., and Porto M. Vectorial representation of single- and multi-domain protein folds. Eur. Phys. J., B Cond. Matter Phys. 54 (2006) 131-136
-
(2006)
Eur. Phys. J., B Cond. Matter Phys.
, vol.54
, pp. 131-136
-
-
Teichert, F.1
Porto, M.2
-
18
-
-
39849110127
-
SABERTOOTH: protein structural alignment based on a vectorial structure representation
-
Teichert F., Bastolla U., and Porto M. SABERTOOTH: protein structural alignment based on a vectorial structure representation. BMC Bioinformatics 8 (2007) 425
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 425
-
-
Teichert, F.1
Bastolla, U.2
Porto, M.3
-
19
-
-
0030627407
-
Recovery of protein structure from contact maps
-
Vendruscolo M., Kussel E., and Domany E. Recovery of protein structure from contact maps. Fold. Des. 2 (1997) 295-306
-
(1997)
Fold. Des.
, vol.2
, pp. 295-306
-
-
Vendruscolo, M.1
Kussel, E.2
Domany, E.3
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