-
5
-
-
0025341237
-
-
J.U. Sowie, N.D. Clarke, C.O. Pabo, R.T. Sauer, Proteins 7, 257 (1990)
-
(1990)
Proteins
, vol.7
, pp. 257
-
-
Sowie, J.U.1
Clarke, N.D.2
Pabo, C.O.3
Sauer, R.T.4
-
8
-
-
3142558004
-
-
M. Porto, U. Bastolla, H.E. Roman, M. Vendruscolo, Phys. Rev. Lett. 92, 218101 (2004)
-
(2004)
Phys. Rev. Lett.
, vol.92
, pp. 218101
-
-
Porto, M.1
Bastolla, U.2
Roman, H.E.3
Vendruscolo, M.4
-
9
-
-
0037530428
-
-
K.A. Eriksen, I. Simonsen, S. Maslov, K. Sneppen, Phys. Rev. Lett. 90, 148701 (2003)
-
(2003)
Phys. Rev. Lett.
, vol.90
, pp. 148701
-
-
Eriksen, K.A.1
Simonsen, I.2
Maslov, S.3
Sneppen, K.4
-
10
-
-
10844225367
-
-
U. Bastolla, M. Porto, H.E. Roman, M. Vendruscolo, Proteins 58, 22 (2005)
-
(2005)
Proteins
, vol.58
, pp. 22
-
-
Bastolla, U.1
Porto, M.2
Roman, H.E.3
Vendruscolo, M.4
-
11
-
-
14544272929
-
-
M. Porto, H.E. Roman, M. Vendruscolo, U. Bastolla, Mol. Biol. Evol. 22, 630 (2005);
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 630
-
-
Porto, M.1
Roman, H.E.2
Vendruscolo, M.3
Bastolla, U.4
-
12
-
-
16344394231
-
-
Mol. Biol. Evol. 22, 1156 (2005)
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1156
-
-
-
13
-
-
15544373116
-
-
U. Bastolla, M. Porto, H.E. Roman, M. Vendruscolo, Gene 247, 219 (2005)
-
(2005)
Gene
, vol.247
, pp. 219
-
-
Bastolla, U.1
Porto, M.2
Roman, H.E.3
Vendruscolo, M.4
-
14
-
-
33748925566
-
-
U. Bastolla, M. Porto, H.E. Roman, M. Vendruscolo, BMC Evol. Biol. 6, 43 (2006)
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 43
-
-
Bastolla, U.1
Porto, M.2
Roman, H.E.3
Vendruscolo, M.4
-
16
-
-
33845511277
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note
-
i are relatively homogenous over the domains, which is for instance true when the domains are well connected within the structure's heavy atoms contact matrix, equation (1). Such multi-domain structures behave like single-domain structures as far as the original definition of the structural profile is concerned. According to the Protein Domain Parser (PDP) [25], the set of 404 folds used in reference [11] contains 45 such multi-domain structures
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-
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17
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33845497081
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note
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ij indicate individual components
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19
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33845505812
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We use the list of October 4, 2005 and consider from each cluster the structure of rank 1
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The list of structures of the dataset NR50 can be obtained from the Protein Databank (PDB) site at ftp://ftp.rcsb.org/pub/pdb/derived_data/NR/. We use the list of October 4, 2005 and consider from each cluster the structure of rank 1
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20
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0033954256
-
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H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne, Nucleic Acids Research 28, 235 (2000)
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
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21
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33845473415
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note
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Note that we apply a somewhat less stringent exclusion rule than in references [10-13]
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22
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0035427382
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U. Bastolla, J. Farwer, E.W. Knapp, M. Vendruscolo, Proteins 44, 79 (2001)
-
(2001)
Proteins
, vol.44
, pp. 79
-
-
Bastolla, U.1
Farwer, J.2
Knapp, E.W.3
Vendruscolo, M.4
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27
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33845508539
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for each structure of the PDB
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The structural profile, as defined in this paper, can be downloaded from the SLOTH homepage http://www.fkp.tu-darmstadt.de/sloth/ for each structure of the PDB
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SLOTH Homepage
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