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Volumn 54, Issue 1, 2006, Pages 131-136

Vectorial representation of single- and multi-domain protein folds

Author keywords

[No Author keywords available]

Indexed keywords

SYSTEMS ANALYSIS; VECTORS;

EID: 33845512710     PISSN: 14346028     EISSN: 14346036     Source Type: Journal    
DOI: 10.1140/epjb/e2006-00417-1     Document Type: Article
Times cited : (6)

References (27)
  • 12
    • 16344394231 scopus 로고    scopus 로고
    • Mol. Biol. Evol. 22, 1156 (2005)
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1156
  • 16
    • 33845511277 scopus 로고    scopus 로고
    • note
    • i are relatively homogenous over the domains, which is for instance true when the domains are well connected within the structure's heavy atoms contact matrix, equation (1). Such multi-domain structures behave like single-domain structures as far as the original definition of the structural profile is concerned. According to the Protein Domain Parser (PDP) [25], the set of 404 folds used in reference [11] contains 45 such multi-domain structures
  • 17
    • 33845497081 scopus 로고    scopus 로고
    • note
    • ij indicate individual components
  • 19
    • 33845505812 scopus 로고    scopus 로고
    • We use the list of October 4, 2005 and consider from each cluster the structure of rank 1
    • The list of structures of the dataset NR50 can be obtained from the Protein Databank (PDB) site at ftp://ftp.rcsb.org/pub/pdb/derived_data/NR/. We use the list of October 4, 2005 and consider from each cluster the structure of rank 1
  • 21
    • 33845473415 scopus 로고    scopus 로고
    • note
    • Note that we apply a somewhat less stringent exclusion rule than in references [10-13]
  • 27
    • 33845508539 scopus 로고    scopus 로고
    • for each structure of the PDB
    • The structural profile, as defined in this paper, can be downloaded from the SLOTH homepage http://www.fkp.tu-darmstadt.de/sloth/ for each structure of the PDB
    • SLOTH Homepage


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.