-
1
-
-
0032592496
-
UNICORE: Uniform access to supercomputing as an element of electronic commerce
-
doi:10.1016/S0167-739x(99)00007-2
-
Almond, J. & Snelling, D. 1999 UNICORE: uniform access to supercomputing as an element of electronic commerce. Future Generation Comput. Syst. 15, 539-548. (doi:10.1016/S0167-739x(99)00007-2)
-
(1999)
Future Generation Comput. Syst
, vol.15
, pp. 539-548
-
-
Almond, J.1
Snelling, D.2
-
2
-
-
32644449824
-
Mesoscopic simulations of systolic flow in the human abdominal aorta
-
doi:10.1016/j.jbiomech.2005.01.033
-
Artoli, A. M., Hoekstra, A. G. & Sloot, P. M. 2006 Mesoscopic simulations of systolic flow in the human abdominal aorta. J. Biomech. 39, 873-874. (doi:10.1016/j.jbiomech.2005.01.033)
-
(2006)
J. Biomech
, vol.39
, pp. 873-874
-
-
Artoli, A.M.1
Hoekstra, A.G.2
Sloot, P.M.3
-
3
-
-
0034352177
-
Strategies for the physiome project
-
doi:10.1114/1.1313771
-
Bassingthwaighte, J. B. 2000 Strategies for the physiome project. Ann. Biomed. Eng. 28, 1043-1058. (doi:10.1114/1.1313771)
-
(2000)
Ann. Biomed. Eng
, vol.28
, pp. 1043-1058
-
-
Bassingthwaighte, J.B.1
-
4
-
-
48349127705
-
-
Amsterdam, The Netherlands: IOS
-
Beckman, P., Beschastnikh, I., Nadella, S. & Trebon, N. 2007 Building an infrastructure for urgent computing. Amsterdam, The Netherlands: IOS.
-
(2007)
Building an infrastructure for urgent computing
-
-
Beckman, P.1
Beschastnikh, I.2
Nadella, S.3
Trebon, N.4
-
5
-
-
85020773040
-
-
1 It could be argued that in a life-or-death situation, the processes needed to make a life-saving decision would take precedence over the issues of privacy and confidentiality.
-
1 It could be argued that in a life-or-death situation, the processes needed to make a life-saving decision would take precedence over the issues of privacy and confidentiality.
-
-
-
-
6
-
-
0033988427
-
Hemodynamics in the carotid artery bifurcation: A comparison between numerical simulations and in vitro MRI measurements
-
doi:10.1016/S0021-9290(99)00164-5
-
Botnar, R., Rappitsch, G., Scheidegger, M. B., Liepsch, D., Perktold, K. & Boesiger, P. 2000 Hemodynamics in the carotid artery bifurcation: a comparison between numerical simulations and in vitro MRI measurements. J. Biomech. 33, 137-144. (doi:10.1016/S0021-9290(99)00164-5)
-
(2000)
J. Biomech
, vol.33
, pp. 137-144
-
-
Botnar, R.1
Rappitsch, G.2
Scheidegger, M.B.3
Liepsch, D.4
Perktold, K.5
Boesiger, P.6
-
7
-
-
33846822002
-
Ligand configurational entropy and protein binding
-
doi:10.1073/pnas.0610494104
-
Chang, C. A., Chen, W. & Gilson, M. K. 2007 Ligand configurational entropy and protein binding. Proc. Natl Acad. Sci. USA 104, 1534-1539. (doi:10.1073/pnas.0610494104)
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 1534-1539
-
-
Chang, C.A.1
Chen, W.2
Gilson, M.K.3
-
8
-
-
0035658264
-
BindingDB: A web-accessible molecular recognition database
-
Chen, X., Lin, Y. & Gilson, M. K. 2001 BindingDB: a web-accessible molecular recognition database. J. Comb. Chem. High Throughput Screen. 4, 719-725.
-
(2001)
J. Comb. Chem. High Throughput Screen
, vol.4
, pp. 719-725
-
-
Chen, X.1
Lin, Y.2
Gilson, M.K.3
-
9
-
-
25144514551
-
Scientific grid computing
-
doi:10. 1098/rsta.2005.1632
-
Coveney, P. V. 2005 Scientific grid computing. Phil. Trans. R. Soc. A 363, 1707-1713. (doi:10. 1098/rsta.2005.1632)
-
(2005)
Phil. Trans. R. Soc. A
, vol.363
, pp. 1707-1713
-
-
Coveney, P.V.1
-
10
-
-
33044506498
-
Modelling biological complexity: A physical scientist's perspective
-
doi:10.1098/rsif.2005.0045
-
Coveney, P. V. & Fowler, P. W. 2005 Modelling biological complexity: a physical scientist's perspective. J. R. Soc. Interface 2, 267-280. (doi:10.1098/rsif.2005.0045)
-
(2005)
J. R. Soc. Interface
, vol.2
, pp. 267-280
-
-
Coveney, P.V.1
Fowler, P.W.2
-
11
-
-
33847221488
-
The application hosting environment: Lightweight middleware for grid-based computational science
-
doi:10.1016/j.cpc.2006.11.011
-
Coveney, P. V., Saksena, R. S., Zasada, S. J., McKeown, M. & Pickles, S. 2007 The application hosting environment: lightweight middleware for grid-based computational science. Comput. Phys. Commun. 176, 406-418. (doi:10.1016/j.cpc.2006.11.011)
-
(2007)
Comput. Phys. Commun
, vol.176
, pp. 406-418
-
-
Coveney, P.V.1
Saksena, R.S.2
Zasada, S.J.3
McKeown, M.4
Pickles, S.5
-
12
-
-
0030870159
-
Kinetic properties of saquinavir-resistant mutants of human immunodeficiency virus type 1 protease and their implications in drug resistance in vivo
-
doi:10.1021/bi971072e
-
Ermolieff, J., Lin, X. & Tang, J. 1997 Kinetic properties of saquinavir-resistant mutants of human immunodeficiency virus type 1 protease and their implications in drug resistance in vivo. Biochemistry 36, 12 364-12 370. (doi:10.1021/bi971072e)
-
(1997)
Biochemistry
, vol.36
-
-
Ermolieff, J.1
Lin, X.2
Tang, J.3
-
13
-
-
33744935671
-
Globus toolkit version 4: Software for service-oriented systems
-
Berlin, Germany: Springer
-
Foster, I. 2006 Globus toolkit version 4: software for service-oriented systems. In IFIP International Conference on Network and Parallel Computing, pp. 2-13. Berlin, Germany: Springer.
-
(2006)
IFIP International Conference on Network and Parallel Computing
, pp. 2-13
-
-
Foster, I.1
-
14
-
-
0035104550
-
Dynamic 3D MR angiography of the pulmonary arteries in under four seconds
-
Goyen, M., Laubb, G., Ladd, M. E., Debatin, J. F., Barkhausen, J., Truemmler, K.-H., Bosk, S. & Ruehm, S. G. 2001 Dynamic 3D MR angiography of the pulmonary arteries in under four seconds. J. Magn. Reson. 13, 372-377.
-
(2001)
J. Magn. Reson
, vol.13
, pp. 372-377
-
-
Goyen, M.1
Laubb, G.2
Ladd, M.E.3
Debatin, J.F.4
Barkhausen, J.5
Truemmler, K.-H.6
Bosk, S.7
Ruehm, S.G.8
-
15
-
-
33744916260
-
The first functional demonstration of optical virtual concatenation as a technique for achieving terabit networking
-
doi:10.1016/j. future.2006.03.027
-
Hirano, A. et al. 2006 The first functional demonstration of optical virtual concatenation as a technique for achieving terabit networking. Future Generation Comput. Syst. 22, 876-883. (doi:10.1016/j. future.2006.03.027)
-
(2006)
Future Generation Comput. Syst
, vol.22
, pp. 876-883
-
-
Hirano, A.1
-
16
-
-
33750630109
-
Update of the drug resistance mutations in HIV-1: Fall 2006
-
Johnson, V. A., Brun-Vezinet, F., Clotet, B., Conway, B., Kuritzkes, D. R., Pillay, D., Schapiro, J. & Richman, D. 2006 Update of the drug resistance mutations in HIV-1: fall 2006. Int. AIDS Soc. - USA 14, 125-130.
-
(2006)
Int. AIDS Soc. - USA
, vol.14
, pp. 125-130
-
-
Johnson, V.A.1
Brun-Vezinet, F.2
Clotet, B.3
Conway, B.4
Kuritzkes, D.R.5
Pillay, D.6
Schapiro, J.7
Richman, D.8
-
17
-
-
0035173377
-
Human immunodeficiency virus reverse transcriptase and protease sequence database: An expanded data model integrating natural language text and sequence analysis programs
-
doi:10.1093/nar/29.1.296
-
Kantor, R., Machekano, R., Gonzales, M. J., Dupnik, K., Schapiro, J. M. & Shafer, R. W. 2001 Human immunodeficiency virus reverse transcriptase and protease sequence database: an expanded data model integrating natural language text and sequence analysis programs. Nucleic Acids Res. 29, 296-299. (doi:10.1093/nar/29.1.296)
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 296-299
-
-
Kantor, R.1
Machekano, R.2
Gonzales, M.J.3
Dupnik, K.4
Schapiro, J.M.5
Shafer, R.W.6
-
18
-
-
0742293840
-
MPICH-G2: A grid-enabled implementation of the message passing interface
-
doi:10.1016/S0743-7315(03)00002-9
-
Karonis, N. T., Toonen, B. & Foster, I. 2003 MPICH-G2: a grid-enabled implementation of the message passing interface. J. Parallel Distrib. Comput. 63, 551-563. (doi:10.1016/S0743-7315(03)00002-9)
-
(2003)
J. Parallel Distrib. Comput
, vol.63
, pp. 551-563
-
-
Karonis, N.T.1
Toonen, B.2
Foster, I.3
-
19
-
-
4544323776
-
Efficiency of a second-generation HIV-1 protease inhibitor studied by molecular dynamics and absolute binding free energy calculations
-
doi:10.1002/prot.20192
-
Lepsik, M., Kriz, Z. & Havlas, Z. 2004 Efficiency of a second-generation HIV-1 protease inhibitor studied by molecular dynamics and absolute binding free energy calculations. Proteins: Struct. Funct. Bioinform. 57, 279-293. (doi:10.1002/prot.20192)
-
(2004)
Proteins: Struct. Funct. Bioinform
, vol.57
, pp. 279-293
-
-
Lepsik, M.1
Kriz, Z.2
Havlas, Z.3
-
20
-
-
85020762242
-
-
MacLaren, J. 2007 HARC: the highly-available resource co-allocator. In Proc. GADA'07, LNCS 4804 (OTM Conferences 2007, Part II). Berlin, Germany: Springer.
-
MacLaren, J. 2007 HARC: the highly-available resource co-allocator. In Proc. GADA'07, LNCS 4804 (OTM Conferences 2007, Part II). Berlin, Germany: Springer.
-
-
-
-
21
-
-
48349094363
-
Life or death decision-making: The medical case for large-scale, on-demand grid computing
-
Manos, S., Zasada, S. & Coveney, P. V. 2008 Life or death decision-making: the medical case for large-scale, on-demand grid computing. CTWatch Q. J. 4, 35-45.
-
(2008)
CTWatch Q. J
, vol.4
, pp. 35-45
-
-
Manos, S.1
Zasada, S.2
Coveney, P.V.3
-
22
-
-
0030468331
-
Human immunodeficiency virus mutations in the viral protease that confer resistance to saquinavir increase the dissociation rate constant of the protease-saquinavir complex
-
doi:10.1074/jbc.271.52.33231
-
Maschera, B., Darby, G., Palu, G., Wright, L. L., Tisdale, M., Myers, R., Blair, E. D. & Furfine, E. S. 1996 Human immunodeficiency virus mutations in the viral protease that confer resistance to saquinavir increase the dissociation rate constant of the protease-saquinavir complex. J. Biol. Chem. 271, 33 231-33 235. (doi:10.1074/jbc.271.52.33231)
-
(1996)
J. Biol. Chem
, vol.271
-
-
Maschera, B.1
Darby, G.2
Palu, G.3
Wright, L.L.4
Tisdale, M.5
Myers, R.6
Blair, E.D.7
Furfine, E.S.8
-
23
-
-
44349177435
-
HemeLB: A high performance parallel lattice-Boltzmann code for large scale fluid flow in complex geometries
-
doi:10.1016/j.cpc.2008.02.013
-
Mazzeo, M. D. & Coveney, P. V. 2008 HemeLB: a high performance parallel lattice-Boltzmann code for large scale fluid flow in complex geometries. Comput. Phys. Commun. 178, 894-914. (doi:10.1016/j.cpc.2008.02.013)
-
(2008)
Comput. Phys. Commun
, vol.178
, pp. 894-914
-
-
Mazzeo, M.D.1
Coveney, P.V.2
-
24
-
-
25144516750
-
A practical toolkit for computational steering
-
doi:10.1098/rsta.2005.1611
-
Pickles, S. M., Haines, R., Pinning, R. L. & Porter, A. R. 2005 A practical toolkit for computational steering. Phil. Trans. R. Soc. A 363, 1843-1853. (doi:10.1098/rsta.2005.1611)
-
(2005)
Phil. Trans. R. Soc. A
, vol.363
, pp. 1843-1853
-
-
Pickles, S.M.1
Haines, R.2
Pinning, R.L.3
Porter, A.R.4
-
25
-
-
39749115910
-
An automated molecular simulation-based binding affinity calculator for ligand-bound HIV-1 proteases
-
Preprint
-
Sadiq, S. K., Zasada, S. J., Wright, D., Stoica, I. & Coveney, P. V. 2008 An automated molecular simulation-based binding affinity calculator for ligand-bound HIV-1 proteases. Preprint.
-
(2008)
-
-
Sadiq, S.K.1
Zasada, S.J.2
Wright, D.3
Stoica, I.4
Coveney, P.V.5
-
26
-
-
0000342562
-
Mutations in retroviral genes associated with drug resistance
-
Schinazi, R. F., Larder, B. A. & Mellors, J. W. 1997 Mutations in retroviral genes associated with drug resistance. Antivir. News 5, 129-142.
-
(1997)
Antivir. News
, vol.5
, pp. 129-142
-
-
Schinazi, R.F.1
Larder, B.A.2
Mellors, J.W.3
-
28
-
-
30344488472
-
A grid-based HIV expert system
-
doi:10.1007/s10877-005-0673-2
-
Sloot, P. M. A., Boukhanovsky, A. V., Keulen, W., Tirado-Ramos, A. & Boucher, C. A. 2005 A grid-based HIV expert system. J. Clin. Monit. Comput. 19, 263-278. (doi:10.1007/s10877-005-0673-2)
-
(2005)
J. Clin. Monit. Comput
, vol.19
, pp. 263-278
-
-
Sloot, P.M.A.1
Boukhanovsky, A.V.2
Keulen, W.3
Tirado-Ramos, A.4
Boucher, C.A.5
-
29
-
-
22144494590
-
Optimization of a genotypic assay applicable to all human immunodeficiency virus type 1 protease and reverse transcriptase subtypes
-
doi:10.1016/j.jviromet.2005.04.001
-
Snoek, J., Riva, C., Steegen, K., Schrooten, Y., Maes, B., Vergne, L., Van Laethem, K., Peeters, M. & Vandamme, A.-M. 2005 Optimization of a genotypic assay applicable to all human immunodeficiency virus type 1 protease and reverse transcriptase subtypes. J. Virol. Methods 128, 47-53. (doi:10.1016/j.jviromet.2005.04.001)
-
(2005)
J. Virol. Methods
, vol.128
, pp. 47-53
-
-
Snoek, J.1
Riva, C.2
Steegen, K.3
Schrooten, Y.4
Maes, B.5
Vergne, L.6
Van Laethem, K.7
Peeters, M.8
Vandamme, A.-M.9
-
30
-
-
39749152456
-
Rapid and accurate prediction of binding free energies for saquinavir-bound HIV-1 proteases
-
doi:10. 1021/ja0779250
-
Stoica, I., Sadiq, S. K. & Coveney, P. V. 2008 Rapid and accurate prediction of binding free energies for saquinavir-bound HIV-1 proteases. J. Am. Chem. Soc. 130, 2639-2648. (doi:10. 1021/ja0779250)
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 2639-2648
-
-
Stoica, I.1
Sadiq, S.K.2
Coveney, P.V.3
-
31
-
-
0033398141
-
Predictive medicine: Computational techniques in therapeutic decision-making
-
Taylor, C. A., Draney, M. T., Ku, J. P., Parker, D., Steele, B. N., Wang, K. & Zarins, C. K. 1999 Predictive medicine: computational techniques in therapeutic decision-making. Comput. Aided Surg. 4, 231-247.
-
(1999)
Comput. Aided Surg
, vol.4
, pp. 231-247
-
-
Taylor, C.A.1
Draney, M.T.2
Ku, J.P.3
Parker, D.4
Steele, B.N.5
Wang, K.6
Zarins, C.K.7
-
32
-
-
0003731910
-
Reducing risks, promoting healthy life. See http
-
The World Health Report 2002 Reducing risks, promoting healthy life. See http://www.who.int/ whr/en.
-
The World Health Report 2002
-
-
-
33
-
-
0029032769
-
Pressure-induced arterial wall stress and atherosclerosis
-
doi:10.1016/0003-4975(94)01037-D
-
Thubrikar, M. J. & Robicsek, F. 1995 Pressure-induced arterial wall stress and atherosclerosis. Ann. Thoracic Surg. 59, 1594-1603. (doi:10.1016/0003-4975(94)01037-D)
-
(1995)
Ann. Thoracic Surg
, vol.59
, pp. 1594-1603
-
-
Thubrikar, M.J.1
Robicsek, F.2
-
34
-
-
0035876257
-
The binding energetics of first- and second-generation HIV-1 protease inhibitors: Implñications for drug design
-
doi:10.1006/abbi.2001.2333
-
Velazquez-Campoy, A., Kiso, Y. & Freire, E. 2001 The binding energetics of first- and second-generation HIV-1 protease inhibitors: implñications for drug design. Arch. Biochem. Biophys. 390, 169-175. (doi:10.1006/abbi.2001.2333)
-
(2001)
Arch. Biochem. Biophys
, vol.390
, pp. 169-175
-
-
Velazquez-Campoy, A.1
Kiso, Y.2
Freire, E.3
-
36
-
-
22544456941
-
Peptide recognition by the T cell receptor: Comparison of binding free energies from thermodynamic integration, poisson-Boltzmann and linear inberation energy approximations
-
doi:10.1098/ rsta.2005.1627
-
Wan, S., Coveney, P. V. & Flower, D. R. 2005 Peptide recognition by the T cell receptor: comparison of binding free energies from thermodynamic integration, poisson-Boltzmann and linear inberation energy approximations. Phil. Trans. R. Soc. A 363, 2037-2053. (doi:10.1098/ rsta.2005.1627)
-
(2005)
Phil. Trans. R. Soc. A
, vol.363
, pp. 2037-2053
-
-
Wan, S.1
Coveney, P.V.2
Flower, D.R.3
-
37
-
-
0035910029
-
Computational study of protein specificity: The molecular basis of HIV-1 protease drug resistance
-
doi:10.1073/ pnas.251265598
-
Wang, W. & Kollman, P. A. 2001 Computational study of protein specificity: the molecular basis of HIV-1 protease drug resistance. Proc. Natl Acad. Sci. USA 98, 14 937-14 942. (doi:10.1073/ pnas.251265598)
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
-
-
Wang, W.1
Kollman, P.A.2
-
38
-
-
0034979318
-
Biomolecular simulations: Recent developments in force fields, simulations of enzyme catalysis, protein-ligand, protein-protein, and protein-nucleic acid noncovalent interactions
-
doi:10.1146/annurev.biophys.30.1.211
-
Wang, W., Donini, O., Reyes, C. M. & Kollman, P. A. 2001 Biomolecular simulations: recent developments in force fields, simulations of enzyme catalysis, protein-ligand, protein-protein, and protein-nucleic acid noncovalent interactions. Annu. Rev. Biophys. Biomol. Struct. 30, 211-243. (doi:10.1146/annurev.biophys.30.1.211)
-
(2001)
Annu. Rev. Biophys. Biomol. Struct
, vol.30
, pp. 211-243
-
-
Wang, W.1
Donini, O.2
Reyes, C.M.3
Kollman, P.A.4
-
39
-
-
0027218692
-
Structure-based inhibitors of HIV-1 protease
-
doi:10.1146/annurev.bi.62.070193.002551
-
Wlodawer, A. & Erickson, J. W. 1993 Structure-based inhibitors of HIV-1 protease. Annu. Rev. Biochem. 62, 543-585. (doi:10.1146/annurev.bi.62.070193.002551)
-
(1993)
Annu. Rev. Biochem
, vol.62
, pp. 543-585
-
-
Wlodawer, A.1
Erickson, J.W.2
-
40
-
-
20244387096
-
Mutation patterns and structural correlates in human immunodeficiency virus type 1 protease following different protease inhibitor treatments
-
doi:10.1128/JVI.77.8.4836-4847.2003
-
Wu, T. D. et al. 2003 Mutation patterns and structural correlates in human immunodeficiency virus type 1 protease following different protease inhibitor treatments. J. Virol. 77, 4836-4847. (doi:10.1128/JVI.77.8.4836-4847.2003)
-
(2003)
J. Virol
, vol.77
, pp. 4836-4847
-
-
Wu, T.D.1
-
41
-
-
33744934216
-
Co-scheduling with user-settable reservations
-
Job scheduling strategies for parallel processing eds D. G. Feitelson, E. Frachtenberg, L. Rudolph, & U. Schwiegelshohn, Berlin, Germany: Springer
-
Yoshimoto, K., Kovatch, P. & Andrews, P. 2005 Co-scheduling with user-settable reservations. In Job scheduling strategies for parallel processing (eds D. G. Feitelson, E. Frachtenberg, L. Rudolph, & U. Schwiegelshohn). Lecture Notes in Computer Sciences, no. 3834, pp. 146-156. Berlin, Germany: Springer.
-
(2005)
Lecture Notes in Computer Sciences
, vol.3834
, pp. 146-156
-
-
Yoshimoto, K.1
Kovatch, P.2
Andrews, P.3
-
42
-
-
0036298514
-
Relation between sequence and structure of HIV-1 protease inhibitor complexes: A model system for the analysis of protein flexibility
-
doi:10.1006/jmbi.2001.5173
-
Zoete, V., Michielin, O. & Karplus, M. 2002 Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility. J. Mol. Biol. 315, 21-52. (doi:10.1006/jmbi.2001.5173)
-
(2002)
J. Mol. Biol
, vol.315
, pp. 21-52
-
-
Zoete, V.1
Michielin, O.2
Karplus, M.3
-
43
-
-
27544505625
-
Bringing combined interaction to a problem solving environment for vascular reconstruction
-
doi:10.1016/j.future.2004. 04.004
-
Zudilova, E. V. & Sloot, P. M. A. 2005 Bringing combined interaction to a problem solving environment for vascular reconstruction. Future Generation Comput. Syst. 21, 1167-1176. (doi:10.1016/j.future.2004. 04.004)
-
(2005)
Future Generation Comput. Syst
, vol.21
, pp. 1167-1176
-
-
Zudilova, E.V.1
Sloot, P.M.A.2
|