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Volumn 14, Issue 7, 2008, Pages

GUS and PMM1 as suitable reference genes for gene expression analysis in the liver tissue of patients with chronic hepatitis

Author keywords

Gene expression; HBV; HCV; Housekeeping genes; Liver; Real time PCR

Indexed keywords

ADULT; AGED; ARTICLE; B GLUCURONIDASE GENE; BETA ACTIN GENE; CHRONIC HEPATITIS; CLINICAL ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; CYCLOPHILIN C GENE; FEMALE; GENE; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC ANALYSIS; GENETIC STABILITY; HEPATITIS B; HEPATITIS B VIRUS; HEPATITIS C; HEPATITIS C VIRUS; HOUSEKEEPING GENE; HUMAN; HUMAN TISSUE; HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE 1 GENE; LIVER; MALE; NUCLEOTIDE SEQUENCE; PHOSPHOMANNOMUTASE 1 GENE; POLYMERASE (RNA)2 POLYPEPTIDE L GENE; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION;

EID: 48349098530     PISSN: 12341010     EISSN: 16433750     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (13)

References (25)
  • 1
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
    • Bustin SA.: Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J Mol Endocrinol, 2002; 29: 23-39
    • (2002) J Mol Endocrinol , vol.29 , pp. 23-39
    • Bustin, S.A.1
  • 3
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
    • Bustin SA: Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J Mol Endocrinol, 2000; 25: 169-93
    • (2000) J Mol Endocrinol , vol.25 , pp. 169-193
    • Bustin, S.A.1
  • 4
    • 0037109753 scopus 로고    scopus 로고
    • Quantitative real-time reverse transcription polymerase chain reaction: Normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies
    • Tricarico C, Pinzani P, Bianchi S et al: Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies. Anal Biochem, 2002; 309: 293-300
    • (2002) Anal Biochem , vol.309 , pp. 293-300
    • Tricarico, C.1    Pinzani, P.2    Bianchi, S.3
  • 5
    • 0032247960 scopus 로고    scopus 로고
    • Quantification of mRNA by polymerase chain reaction (PCR) using an internal standard and a non-radioactive detection method
    • Karge WH III, Schaefer EJ, Ordovas JM: Quantification of mRNA by polymerase chain reaction (PCR) using an internal standard and a non-radioactive detection method. Methods Mol Biol, 1998; 110: 43-61
    • (1998) Methods Mol Biol , vol.110 , pp. 43-61
    • Karge III, W.H.1    Schaefer, E.J.2    Ordovas, J.M.3
  • 6
    • 0032883806 scopus 로고    scopus 로고
    • Housekeeping genes as internal standards: Use and limits
    • Thellin O, Zorzi W, Lakaye B et al: Housekeeping genes as internal standards: use and limits. J Biotechnol, 1999; 75: 291-95
    • (1999) J Biotechnol , vol.75 , pp. 291-295
    • Thellin, O.1    Zorzi, W.2    Lakaye, B.3
  • 7
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • Huggett J, Dheda K, Bustin S, Zumla A: Real-time RT-PCR normalisation; strategies and considerations. Genes Immun, 2005; 6: 279-84
    • (2005) Genes Immun , vol.6 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 8
    • 0346728757 scopus 로고    scopus 로고
    • Guideline to reference gene selection for quantitative real-time PCR
    • Radonic A, Thulke S, Mackay IM, Landt O et al: Guideline to reference gene selection for quantitative real-time PCR. Biochem Biophys Res Commun, 2004; 313: 856-62
    • (2004) Biochem Biophys Res Commun , vol.313 , pp. 856-862
    • Radonic, A.1    Thulke, S.2    Mackay, I.M.3    Landt, O.4
  • 9
    • 0036178995 scopus 로고    scopus 로고
    • Control genes and variability absence of ubiquitous reference transcripts in diverse mammalian expression studies
    • Lee PD, Sladek R, Greenwood CM, Hudson TJ: Control genes and variability absence of ubiquitous reference transcripts in diverse mammalian expression studies. Genome Res, 2002; 12: 292-97
    • (2002) Genome Res , vol.12 , pp. 292-297
    • Lee, P.D.1    Sladek, R.2    Greenwood, C.M.3    Hudson, T.J.4
  • 10
    • 0034694128 scopus 로고    scopus 로고
    • Effect of experimental treatment on housekeeping gene expression: Validation by real-time, quantitative RT-PCR
    • Schmittgen TD, Zakrajsek BA: Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J Biochem Biophys Methods, 2000; 46: 69-81
    • (2000) J Biochem Biophys Methods , vol.46 , pp. 69-81
    • Schmittgen, T.D.1    Zakrajsek, B.A.2
  • 11
    • 0034720002 scopus 로고    scopus 로고
    • Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes
    • Warrington JA, Nair A, Mahadevappa M, Tsyganskaya M: Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. Physiol Genomics, 2000; 2: 143-47
    • (2000) Physiol Genomics , vol.2 , pp. 143-147
    • Warrington, J.A.1    Nair, A.2    Mahadevappa, M.3    Tsyganskaya, M.4
  • 12
    • 3142615272 scopus 로고    scopus 로고
    • Validation of housekeeping genes for normalizing RNA expression in real-time PCR
    • Dheda K, Huggett JF, Bustin SA et al: Validation of housekeeping genes for normalizing RNA expression in real-time PCR. Biotechniques, 2004; 37: 112-19
    • (2004) Biotechniques , vol.37 , pp. 112-119
    • Dheda, K.1    Huggett, J.F.2    Bustin, S.A.3
  • 13
    • 3042834679 scopus 로고    scopus 로고
    • Single muscle fiber gene expression in human skeletal muscle: Validation of internal control with exercise
    • Jemiolo B, Trappe S: Single muscle fiber gene expression in human skeletal muscle: validation of internal control with exercise. Biochem Biophys Res Commun. 2004; 320: 1043-50
    • (2004) Biochem Biophys Res Commun , vol.320 , pp. 1043-1050
    • Jemiolo, B.1    Trappe, S.2
  • 14
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele J, De Preter K, Pattyn F et al: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol, 2002; 3: RESEARCH0034
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3
  • 15
    • 0034091196 scopus 로고    scopus 로고
    • A reliability test of standard-based quantitative PCR: Exogenous vs endogenous standards
    • Ke LD, Chen Z, Yung WK: A reliability test of standard-based quantitative PCR: exogenous vs endogenous standards. Mol Cell Probes, 2000; 14: 127-35
    • (2000) Mol Cell Probes , vol.14 , pp. 127-135
    • Ke, L.D.1    Chen, Z.2    Yung, W.K.3
  • 16
    • 0034816222 scopus 로고    scopus 로고
    • Fudenine, a C-terminal truncated rat homologue of mouse prominin, is blood glucose-regulated and can up-regulate the expression of GAPDH
    • Zhu G, Chang Y, Zuo J et al: Fudenine, a C-terminal truncated rat homologue of mouse prominin, is blood glucose-regulated and can up-regulate the expression of GAPDH. Biochem Biophys Res Commun, 2001; 281: 951-56
    • (2001) Biochem Biophys Res Commun , vol.281 , pp. 951-956
    • Zhu, G.1    Chang, Y.2    Zuo, J.3
  • 17
    • 0035423813 scopus 로고    scopus 로고
    • Ribosomal 18S RNA prevails over glyceraldehyde-3-phosphate dehydrogenase and beta-actin genes as internal standard for quantitative comparison of mRNA levels in invasive and noninvasive human melanoma cell subpopulations
    • Goidin D, Mamessier A, Staquet MJ et al: Ribosomal 18S RNA prevails over glyceraldehyde-3-phosphate dehydrogenase and beta-actin genes as internal standard for quantitative comparison of mRNA levels in invasive and noninvasive human melanoma cell subpopulations. Anal Biochem, 2001; 295: 17-21
    • (2001) Anal Biochem , vol.295 , pp. 17-21
    • Goidin, D.1    Mamessier, A.2    Staquet, M.J.3
  • 18
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen CL, Jensen JL, Orntoft TF: Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res, 2004; 64: 5245-50
    • (2004) Cancer Res , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 19
    • 12944307847 scopus 로고    scopus 로고
    • Housekeeping gene variability in normal and cancerous colorectal, pancreatic, esophageal, gastric and hepatic tissues
    • Rubie C, Kempf K, Hans J et al: Housekeeping gene variability in normal and cancerous colorectal, pancreatic, esophageal, gastric and hepatic tissues. Mol Cell Probes, 2005; 19: 101-9
    • (2005) Mol Cell Probes , vol.19 , pp. 101-109
    • Rubie, C.1    Kempf, K.2    Hans, J.3
  • 20
    • 0043192611 scopus 로고    scopus 로고
    • Selection of optimal internal controls for gene expression profiling of liver disease
    • Kim Z, Lim T: Selection of optimal internal controls for gene expression profiling of liver disease. Biotechniques, 2003; 35: 456-60
    • (2003) Biotechniques , vol.35 , pp. 456-460
    • Kim, Z.1    Lim, T.2
  • 21
    • 0037089538 scopus 로고    scopus 로고
    • Housekeeping gene variability in normal and carcinomatous colorectal and liver tissues: Applications in pharmacogenomic gene expression studies
    • Blanquicett C, Johnson MR, Heslin M, Diasio RB: Housekeeping gene variability in normal and carcinomatous colorectal and liver tissues: applications in pharmacogenomic gene expression studies. Anal Biochem, 2002; 303: 209-14
    • (2002) Anal Biochem , vol.303 , pp. 209-214
    • Blanquicett, C.1    Johnson, M.R.2    Heslin, M.3    Diasio, R.B.4
  • 22
    • 33644876821 scopus 로고    scopus 로고
    • HFE gene mutations in Polish patients with disturbances of iron metabolism: An initial assessment
    • Sikorska K, Bielawski KP, Stalke P et al: HFE gene mutations in Polish patients with disturbances of iron metabolism: an initial assessment. Int J Mol Med, 2005; 16: 1151-56
    • (2005) Int J Mol Med , vol.16 , pp. 1151-1156
    • Sikorska, K.1    Bielawski, K.P.2    Stalke, P.3
  • 23
    • 7444226814 scopus 로고    scopus 로고
    • Equivalence test in quantitative reverse transcription polymerase chain reaction: Confirmation of reference genes suitable for normalization
    • Haller F, Kulle B, Schwager S et al: Equivalence test in quantitative reverse transcription polymerase chain reaction: confirmation of reference genes suitable for normalization. Anal Biochem, 2004; 335: 1-9
    • (2004) Anal Biochem , vol.335 , pp. 1-9
    • Haller, F.1    Kulle, B.2    Schwager, S.3
  • 24
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations
    • Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP: Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol Lett, 2004; 26: 509-45
    • (2004) Biotechnol Lett , vol.26 , pp. 509-545
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 25
    • 15444373286 scopus 로고    scopus 로고
    • Statistical modeling for selecting housekeeper genes
    • Szabo A, Perou CM, Karaca M et al: Statistical modeling for selecting housekeeper genes. Genome Biol, 2004; 5: R59
    • (2004) Genome Biol , vol.5
    • Szabo, A.1    Perou, C.M.2    Karaca, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.