메뉴 건너뛰기




Volumn 275, Issue 16, 2008, Pages 4164-4178

Nop53p interacts with 5.8S rRNA co-transcriptionally, and regulates processing of pre-rRNA by the exosome

Author keywords

Exosome activation; pre 60S; pre rRNA processing; Protein RNA interaction; Ribosome biogenesis

Indexed keywords

NIP7P PROTEIN; NOP17P PROTEIN; NOP53P PROTEIN; NUCLEAR PROTEIN; PEPTIDES AND PROTEINS; RIBOSOME RNA; RRP6P PROTEIN;

EID: 48249152257     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2008.06565.x     Document Type: Article
Times cited : (26)

References (55)
  • 2
    • 34547618603 scopus 로고    scopus 로고
    • Functional analysis of Saccharomyces cerevisiae ribosomal protein Rpl3p in ribosome synthesis
    • Rosado VI, Kressler D de la Cruz J (2007) Functional analysis of Saccharomyces cerevisiae ribosomal protein Rpl3p in ribosome synthesis. Nucleic Acids Res 35, 4203 4213.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4203-4213
    • Rosado, V.I.1    Kressler, D.2    De La Cruz, J.3
  • 3
    • 26944450063 scopus 로고    scopus 로고
    • Roles of eukaryotic ribosomal proteins in maturation and transport of pre-18S rRNA and ribosome function
    • Ferreira-Cerca S, Poll G, Gleizes PE, Tschochner H Milkereit P (2005) Roles of eukaryotic ribosomal proteins in maturation and transport of pre-18S rRNA and ribosome function. Mol Cell 20, 263 275.
    • (2005) Mol Cell , vol.20 , pp. 263-275
    • Ferreira-Cerca, S.1    Poll, G.2    Gleizes, P.E.3    Tschochner, H.4    Milkereit, P.5
  • 5
    • 34548341811 scopus 로고    scopus 로고
    • Roles of the HEAT repeat proteins Utp10 and Utp20 in 40S ribosome maturation
    • Dez C, Dlakic M Tollervey D (2007) Roles of the HEAT repeat proteins Utp10 and Utp20 in 40S ribosome maturation. RNA 13, 1516 1527.
    • (2007) RNA , vol.13 , pp. 1516-1527
    • Dez, C.1    Dlakic, M.2    Tollervey, D.3
  • 6
    • 34547163927 scopus 로고    scopus 로고
    • The 90S pre-ribosome is a multimodular structure that is assembled through a hierarchical mechanism
    • Perez-Fernandez J, Roman A, Rivas J, Bustelo XR Dosil M (2007) The 90S pre-ribosome is a multimodular structure that is assembled through a hierarchical mechanism. Mol Cell Biol 27, 5414 5429.
    • (2007) Mol Cell Biol , vol.27 , pp. 5414-5429
    • Perez-Fernandez, J.1    Roman, A.2    Rivas, J.3    Bustelo, X.R.4    Dosil, M.5
  • 10
    • 1642447091 scopus 로고    scopus 로고
    • Dim2p, a KH-domain protein required for small ribosomal subunit synthesis
    • Vanrobays E, Gelugne JP, Caizergues-Ferrer M Lafontaine DL (2004) Dim2p, a KH-domain protein required for small ribosomal subunit synthesis. RNA 10, 645 656.
    • (2004) RNA , vol.10 , pp. 645-656
    • Vanrobays, E.1    Gelugne, J.P.2    Caizergues-Ferrer, M.3    Lafontaine, D.L.4
  • 11
    • 18644372079 scopus 로고    scopus 로고
    • 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm
    • Nissan TA, Baßler J, Petfalski E, Tollervey D Hurt E (2002) 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. EMBO J 21, 5539 5547.
    • (2002) EMBO J , vol.21 , pp. 5539-5547
    • Nissan, T.A.1    Baßler, J.2    Petfalski, E.3    Tollervey, D.4    Hurt, E.5
  • 12
    • 0036787003 scopus 로고    scopus 로고
    • Components of an interdependent unit within the SSU processome regulate and mediate its activity
    • Wehner KA, Gallagher JE Baserga SJ (2002) Components of an interdependent unit within the SSU processome regulate and mediate its activity. Mol Cell Biol 22, 7258 7267.
    • (2002) Mol Cell Biol , vol.22 , pp. 7258-7267
    • Wehner, K.A.1    Gallagher, J.E.2    Baserga, S.J.3
  • 13
    • 0030702085 scopus 로고    scopus 로고
    • The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′→5′ exoribonucleases
    • Mitchell P, Petfalski E, Shevchenko A, Mann M Tollervey D (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′→5′ exoribonucleases. Cell 91, 457 466.
    • (1997) Cell , vol.91 , pp. 457-466
    • Mitchell, P.1    Petfalski, E.2    Shevchenko, A.3    Mann, M.4    Tollervey, D.5
  • 14
    • 0033105059 scopus 로고    scopus 로고
    • The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA
    • Zanchin NIT Goldfarb DS (1999) The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA. Nucleic Acids Res 27, 1283 1288.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1283-1288
    • Zanchin, N.I.T.1    Goldfarb, D.S.2
  • 16
    • 0036799218 scopus 로고    scopus 로고
    • Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome
    • Oliveira CC, Gonzales FA Zanchin NIT (2002) Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome. Nucleic Acids Res 30, 4186 4198.
    • (2002) Nucleic Acids Res , vol.30 , pp. 4186-4198
    • Oliveira, C.C.1    Gonzales, F.A.2    Zanchin, N.I.T.3
  • 18
    • 0033777266 scopus 로고    scopus 로고
    • Function of the Ski4p (Csl4p) and Ski7p proteins in 3′-to-5′ degradation of mRNA
    • van Hoof A, Staples RR, Baker RE Parker R (2000) Function of the Ski4p (Csl4p) and Ski7p proteins in 3′-to-5′ degradation of mRNA. Mol Cell Biol 20, 8230 8243.
    • (2000) Mol Cell Biol , vol.20 , pp. 8230-8243
    • Van Hoof, A.1    Staples, R.R.2    Baker, R.E.3    Parker, R.4
  • 21
    • 2642574393 scopus 로고    scopus 로고
    • Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae
    • Kadaba S, Krueger A, Trice T, Krecic AM, Hinnebusch AG Anderson J (2004) Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. Genes Dev 18, 1227 1240.
    • (2004) Genes Dev , vol.18 , pp. 1227-1240
    • Kadaba, S.1    Krueger, A.2    Trice, T.3    Krecic, A.M.4    Hinnebusch, A.G.5    Anderson, J.6
  • 25
    • 0032938118 scopus 로고    scopus 로고
    • Nip7p interacts with Nop8p, an essential nucleolar protein required for 60S ribosome biogenesis, and the exosome subunit Rrp43p
    • Zanchin NIT Goldfarb DS (1999) Nip7p interacts with Nop8p, an essential nucleolar protein required for 60S ribosome biogenesis, and the exosome subunit Rrp43p. Mol Cell Biol 19, 1518 1525.
    • (1999) Mol Cell Biol , vol.19 , pp. 1518-1525
    • Zanchin, N.I.T.1    Goldfarb, D.S.2
  • 26
    • 12544251380 scopus 로고    scopus 로고
    • Characterization of Saccharomyces cerevisiae Nop17p, a novel Nop58p-interacting protein that is involved in pre-rRNA processing
    • Gonzales FA, Zanchin NIT, Luz JS Oliveira CC (2005) Characterization of Saccharomyces cerevisiae Nop17p, a novel Nop58p-interacting protein that is involved in pre-rRNA processing. J Mol Biol 346, 437 455.
    • (2005) J Mol Biol , vol.346 , pp. 437-455
    • Gonzales, F.A.1    Zanchin, N.I.T.2    Luz, J.S.3    Oliveira, C.C.4
  • 28
    • 0034653440 scopus 로고    scopus 로고
    • Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast
    • van Hoof A, Lennertz P Parker R (2000) Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast. EMBO J 15, 1357 1365.
    • (2000) EMBO J , vol.15 , pp. 1357-1365
    • Van Hoof, A.1    Lennertz, P.2    Parker, R.3
  • 29
    • 0035801392 scopus 로고    scopus 로고
    • Ski7p G protein interacts with the exosome and the Ski complex for 3′-to-5′ mRNA decay in yeast
    • Araki Y, Takahashi S, Kobayashi T, Kajiho H, Hoshino S Katada T (2001) Ski7p G protein interacts with the exosome and the Ski complex for 3′-to-5′ mRNA decay in yeast. EMBO J 20, 4684 4693.
    • (2001) EMBO J , vol.20 , pp. 4684-4693
    • Araki, Y.1    Takahashi, S.2    Kobayashi, T.3    Kajiho, H.4    Hoshino, S.5    Katada, T.6
  • 30
    • 23644443992 scopus 로고    scopus 로고
    • Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p
    • Wang L, Lewis MS Johnson AW (2005) Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p. RNA 11, 1291 1302.
    • (2005) RNA , vol.11 , pp. 1291-1302
    • Wang, L.1    Lewis, M.S.2    Johnson, A.W.3
  • 31
    • 24644440130 scopus 로고    scopus 로고
    • Nop53p, an essential nucleolar protein that interacts with Nop17p and Nip7p, is required for pre-rRNA processing in Saccharomyces cerevisiae
    • Granato DC, Gonzales FA, Luz JS, Cassiola F, Machado-Santelli GM Oliveira CC (2005) Nop53p, an essential nucleolar protein that interacts with Nop17p and Nip7p, is required for pre-rRNA processing in Saccharomyces cerevisiae. FEBS J 272, 4450 4463.
    • (2005) FEBS J , vol.272 , pp. 4450-4463
    • Granato, D.C.1    Gonzales, F.A.2    Luz, J.S.3    Cassiola, F.4    MacHado-Santelli, G.M.5    Oliveira, C.C.6
  • 32
    • 23644445820 scopus 로고    scopus 로고
    • Nop53p is required for late 60S ribosome subunit maturation and nuclear export in yeast
    • Thomson E Tollervey D (2005) Nop53p is required for late 60S ribosome subunit maturation and nuclear export in yeast. RNA 11, 1215 1224.
    • (2005) RNA , vol.11 , pp. 1215-1224
    • Thomson, E.1    Tollervey, D.2
  • 34
    • 0742270606 scopus 로고    scopus 로고
    • Tor pathway regulates Rrn3p-dependent recruitment of yeast RNA polymerase I to the promoter but does not participate in alteration of the number of active genes
    • Claypool JA, French SL, Johzuka K, Eliason K, Vu L, Dodd JA, Beyer AL Nomura M (2004) Tor pathway regulates Rrn3p-dependent recruitment of yeast RNA polymerase I to the promoter but does not participate in alteration of the number of active genes. Mol Biol Cell 15, 946 956.
    • (2004) Mol Biol Cell , vol.15 , pp. 946-956
    • Claypool, J.A.1    French, S.L.2    Johzuka, K.3    Eliason, K.4    Vu, L.5    Dodd, J.A.6    Beyer, A.L.7    Nomura, M.8
  • 36
    • 34347332400 scopus 로고    scopus 로고
    • Depletion of the yeast nuclear exosome subunit Rrp6 results in accumulation of polyadenylated RNAs in a discrete domain within the nucleolus
    • Carneiro T, Carvalho C, Braga J, Rino J, Milligan L, Tollervey D Carmo-Fonseca M (2007) Depletion of the yeast nuclear exosome subunit Rrp6 results in accumulation of polyadenylated RNAs in a discrete domain within the nucleolus. Mol Cell Biol 27, 4157 4165.
    • (2007) Mol Cell Biol , vol.27 , pp. 4157-4165
    • Carneiro, T.1    Carvalho, C.2    Braga, J.3    Rino, J.4    Milligan, L.5    Tollervey, D.6    Carmo-Fonseca, M.7
  • 37
    • 34347336512 scopus 로고    scopus 로고
    • Potential interface between ribosomal protein production and pre-rRNA processing
    • Rudra D, Mallick J, Zhao Y Warner JR (2007) Potential interface between ribosomal protein production and pre-rRNA processing. Mol Cell Biol 27, 4815 4824.
    • (2007) Mol Cell Biol , vol.27 , pp. 4815-4824
    • Rudra, D.1    Mallick, J.2    Zhao, Y.3    Warner, J.R.4
  • 38
    • 0033367325 scopus 로고    scopus 로고
    • Ribosome synthesis in Saccharomyces cerevisiae
    • Venema J Tollerevey D (1999) Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33, 261 311.
    • (1999) Annu Rev Genet , vol.33 , pp. 261-311
    • Venema, J.1    Tollerevey, D.2
  • 39
    • 34250339672 scopus 로고    scopus 로고
    • C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing
    • Schilders G, van Dijk E Pruijn GJ (2007) C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing. Nucleic Acids Res 35, 2564 2572.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2564-2572
    • Schilders, G.1    Van Dijk, E.2    Pruijn, G.J.3
  • 40
    • 0035945255 scopus 로고    scopus 로고
    • All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae
    • van Beekvelt CA, Graaff-Vincent M, Faber AW, van't Riet J, Venema J Raué HA (2001) All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae. Nucleic Acids Res 29, 5001 5008.
    • (2001) Nucleic Acids Res , vol.29 , pp. 5001-5008
    • Van Beekvelt, C.A.1    Graaff-Vincent, M.2    Faber, A.W.3    Van'T Riet, J.4    Venema, J.5    Raué, H.A.6
  • 41
    • 36248953200 scopus 로고    scopus 로고
    • Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast
    • Thomson E, Rappsilber J Tollervey D (2007) Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast. RNA 13, 2165 2174.
    • (2007) RNA , vol.13 , pp. 2165-2174
    • Thomson, E.1    Rappsilber, J.2    Tollervey, D.3
  • 43
    • 30744467674 scopus 로고    scopus 로고
    • Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts
    • Vasiljeva L Buratowski S (2006) Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts. Mol Cell 21, 239 248.
    • (2006) Mol Cell , vol.21 , pp. 239-248
    • Vasiljeva, L.1    Buratowski, S.2
  • 44
    • 0030455820 scopus 로고    scopus 로고
    • Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
    • James P, Halladay J Craig EA (1996) Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144, 1425 1436.
    • (1996) Genetics , vol.144 , pp. 1425-1436
    • James, P.1    Halladay, J.2    Craig, E.A.3
  • 45
    • 0029953712 scopus 로고    scopus 로고
    • Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast
    • Niedenthal RK, Riles L, Johnston M, Hegemann JH (1996) Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast. Yeast 12, 773 786.
    • (1996) Yeast , vol.12 , pp. 773-786
    • Niedenthal, R.K.1    Riles, L.2    Johnston, M.3    Hegemann, J.H.4
  • 46
    • 34247585549 scopus 로고    scopus 로고
    • Analysis of the Saccharomyces cerevisiae exosome architecture and of the RNA binding activity of Rrp40p
    • Luz JS, Tavares JR, Gonzales FA, Santos MC Oliveira CC (2007) Analysis of the Saccharomyces cerevisiae exosome architecture and of the RNA binding activity of Rrp40p. Biochimie 89, 686 691.
    • (2007) Biochimie , vol.89 , pp. 686-691
    • Luz, J.S.1    Tavares, J.R.2    Gonzales, F.A.3    Santos, M.C.4    Oliveira, C.C.5
  • 48
    • 0020959710 scopus 로고
    • Studies on transformation of Escherichia coli with plasmids
    • Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166, 557 580.
    • (1983) J Mol Biol , vol.166 , pp. 557-580
    • Hanahan, D.1
  • 50
    • 0034814713 scopus 로고    scopus 로고
    • Purification of yeast exosome
    • Mitchell P (2001) Purification of yeast exosome. Methods Enzymol 342, 356 364.
    • (2001) Methods Enzymol , vol.342 , pp. 356-364
    • Mitchell, P.1
  • 51
    • 0036916733 scopus 로고    scopus 로고
    • Naf1p is a box H/ACA snoRNP assembly factor
    • Fatica A, Dlakic A Tollervey D (2002) Naf1p is a box H/ACA snoRNP assembly factor. RNA 8, 1502 1514.
    • (2002) RNA , vol.8 , pp. 1502-1514
    • Fatica, A.1    Dlakic, A.2    Tollervey, D.3
  • 52
    • 0030745619 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis
    • Zanchin NIT, Roberts P, DeSilva A, Sherman F Goldfarb DS (1997) Saccharomyces cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis. Mol Cell Biol 17, 5001 5015.
    • (1997) Mol Cell Biol , vol.17 , pp. 5001-5015
    • Zanchin, N.I.T.1    Roberts, P.2    Desilva, A.3    Sherman, F.4    Goldfarb, D.S.5
  • 53
    • 33746488767 scopus 로고    scopus 로고
    • Conventional 3′ end formation is not required for NMD substrate recognition in Saccharomyces cerevisiae
    • Baker KE Parker R (2006) Conventional 3′ end formation is not required for NMD substrate recognition in Saccharomyces cerevisiae. RNA 12, 1441 1445.
    • (2006) RNA , vol.12 , pp. 1441-1445
    • Baker, K.E.1    Parker, R.2
  • 54
    • 2142658771 scopus 로고    scopus 로고
    • Using chromatin immunoprecipitation to map co-transcriptional mRNA processing in Saccharomyces cerevisiae
    • Keogh MC Buratowski S (2004) Using chromatin immunoprecipitation to map co-transcriptional mRNA processing in Saccharomyces cerevisiae. Methods Mol Biol 257, 1 16.
    • (2004) Methods Mol Biol , vol.257 , pp. 1-16
    • Keogh, M.C.1    Buratowski, S.2
  • 55
    • 0041856309 scopus 로고    scopus 로고
    • Organization and function of APT, a sub-complex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and snoRNA 3′ ends
    • Nedea E, He X, Kim M, Pootoolal J, Zhong G, Canadien V, Hughes T, Buratowski Moore CL Greenblatt J (2003) Organization and function of APT, a sub-complex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and snoRNA 3′ ends. J Biol Chem 278, 33000 33010.
    • (2003) J Biol Chem , vol.278 , pp. 33000-33010
    • Nedea, E.1    He, X.2    Kim, M.3    Pootoolal, J.4    Zhong, G.5    Canadien, V.6    Hughes, T.7    Buratowski Moore, C.L.8    Greenblatt, J.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.