-
1
-
-
0004161721
-
-
Calendar,R, ed, 2nd edn. Oxford University Press, Oxford, New York, pp
-
Campbell,A. (2006) In Calendar,R. (ed.), The Bacteriophages. 2nd edn. Oxford University Press, Oxford, New York, pp. 66-73
-
(2006)
The Bacteriophages
, pp. 66-73
-
-
Campbell, A.1
-
2
-
-
0024386798
-
Dynamic, structural, and regulatory aspects of lambda site-specific recombination
-
Landy,A. (1989) Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Ann. Rev. Biochem., 58, 913-949.
-
(1989)
Ann. Rev. Biochem
, vol.58
, pp. 913-949
-
-
Landy, A.1
-
3
-
-
0035368920
-
Control of directionality in integrase-mediated recombination: Examination of recombination directionality factors (RDFs) including Xis and Cox proteins
-
Lewis,J.A. and Hatfull,G.F. (2001) Control of directionality in integrase-mediated recombination: Examination of recombination directionality factors (RDFs) including Xis and Cox proteins. Nucleic Acids Res., 29, 2205-2216.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2205-2216
-
-
Lewis, J.A.1
Hatfull, G.F.2
-
4
-
-
1542397137
-
Phage integrases: Biology and applications
-
Groth,A.C. and Calos,M.P. (2004) Phage integrases: Biology and applications. J. Mol. Biol., 335, 667-678.
-
(2004)
J. Mol. Biol
, vol.335
, pp. 667-678
-
-
Groth, A.C.1
Calos, M.P.2
-
5
-
-
31144443605
-
Iterative in vivo assembly of large and complex transgenes by combining the activities of φC31 integrase and Cre recombinase
-
Dafhnis-Calas,F., Xu,Z., Haines,S., Malla,S.K., Smith,M.C.M. and Brown,W.R. (2005) Iterative in vivo assembly of large and complex transgenes by combining the activities of φC31 integrase and Cre recombinase. Nucleic Acids Res., 33, e189.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Dafhnis-Calas, F.1
Xu, Z.2
Haines, S.3
Malla, S.K.4
Smith, M.C.M.5
Brown, W.R.6
-
6
-
-
0034705105
-
A phage integrase directs efficient site-specific integration in human cells
-
Groth,A.C., Olivares,E.C., Thyagarajan,B. and Calos,M.P. (2000) A phage integrase directs efficient site-specific integration in human cells. Proc. Natl. Acad. Sci. USA, 97, 5995-6000.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5995-6000
-
-
Groth, A.C.1
Olivares, E.C.2
Thyagarajan, B.3
Calos, M.P.4
-
7
-
-
27244457209
-
Rearranging the centromere of the human Y chromosome with φC31 integrase
-
Malla,S., Dafhnis-Calas,F., Brookfield,J.F., Smith,M.C.M. and Brown,W.R. (2005) Rearranging the centromere of the human Y chromosome with φC31 integrase. Nucleic Acids Res., 33, 6101-6113.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6101-6113
-
-
Malla, S.1
Dafhnis-Calas, F.2
Brookfield, J.F.3
Smith, M.C.M.4
Brown, W.R.5
-
8
-
-
33845698104
-
P[acman]: A BAC transgenic platform for targeted insertion of large DNA fragments in D. melanogaster
-
Venken,K.J., He,Y., Hoskins,R.A. and Bellen,H.J. (2006) P[acman]: A BAC transgenic platform for targeted insertion of large DNA fragments in D. melanogaster. Science, 314, 1747-1751.
-
(2006)
Science
, vol.314
, pp. 1747-1751
-
-
Venken, K.J.1
He, Y.2
Hoskins, R.A.3
Bellen, H.J.4
-
9
-
-
33845440072
-
The φC31 integrase system for gene therapy
-
Calos,M.P. (2006) The φC31 integrase system for gene therapy. Curr. Gene. Ther., 6, 633-645.
-
(2006)
Curr. Gene. Ther
, vol.6
, pp. 633-645
-
-
Calos, M.P.1
-
10
-
-
30944462461
-
Transgenic Xenopus laevis embryos can be generated using φC31 integrase
-
Allen,B.G. and Weeks,D.L. (2005) Transgenic Xenopus laevis embryos can be generated using φC31 integrase. Nat. Methods, 2, 975-979.
-
(2005)
Nat. Methods
, vol.2
, pp. 975-979
-
-
Allen, B.G.1
Weeks, D.L.2
-
11
-
-
33847660443
-
An optimized transgenesis system for Drosophila using germline-specific φC31 integrases
-
Bischof,J., Maeda,R.K., Hediger,M., Karch,F. and Basler,K. (2007) An optimized transgenesis system for Drosophila using germline-specific φC31 integrases. Proc. Natl Acad. Sci. USA, 104, 3312-3317.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 3312-3317
-
-
Bischof, J.1
Maeda, R.K.2
Hediger, M.3
Karch, F.4
Basler, K.5
-
12
-
-
34247204915
-
Plastid marker gene excision by the φC31 phage site-specific recombinase
-
Kittiwongwattana,C., Lutz,K., Clark,M. and Maliga,P. (2007) Plastid marker gene excision by the φC31 phage site-specific recombinase. Plant Mol. Biol., 64, 137-143.
-
(2007)
Plant Mol. Biol
, vol.64
, pp. 137-143
-
-
Kittiwongwattana, C.1
Lutz, K.2
Clark, M.3
Maliga, P.4
-
13
-
-
0036842502
-
Site-specific genomic integration produces therapeutic Factor IX levels in mice
-
Olivares,E.C., Hollis,R.P., Chalberg,T.W., Meuse,L., Kay,M.A. and Calos,M.P. (2002) Site-specific genomic integration produces therapeutic Factor IX levels in mice. Nat. Biotechnol., 20, 1124-1128.
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 1124-1128
-
-
Olivares, E.C.1
Hollis, R.P.2
Chalberg, T.W.3
Meuse, L.4
Kay, M.A.5
Calos, M.P.6
-
14
-
-
0034924880
-
Gene insertion and replacement in Schizosaccharomyces pombe mediated by the Streptomyces bacteriophage φC31 site-specific recombination system
-
Thomason,L.C., Calendar,R. and Ow,D.W. (2001) Gene insertion and replacement in Schizosaccharomyces pombe mediated by the Streptomyces bacteriophage φC31 site-specific recombination system. Mol. Genet. Genomics, 265, 1031-1038.
-
(2001)
Mol. Genet. Genomics
, vol.265
, pp. 1031-1038
-
-
Thomason, L.C.1
Calendar, R.2
Ow, D.W.3
-
15
-
-
0002603578
-
-
Craig,N.L, Craigie,R, Gellert,M. and Lambowitz,A.M, eds, ASM Press, Washington pp
-
Grindley,N.D.F. (2002) In Craig,N.L., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), Mobile DNA II., ASM Press, Washington pp. 272-302.
-
(2002)
Mobile DNA II
, pp. 272-302
-
-
Grindley, N.D.F.1
-
16
-
-
0002822233
-
-
Craig,N.L, Craigie,R, Gellert,M. and Lambowitz,A.M, eds, ASM Press, Washington D.C, pp
-
Johnson,R.C. (2002) In Craig,N.L., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), Mobile DNA II., ASM Press, Washington D.C., pp. 230-271.
-
(2002)
Mobile DNA II
, pp. 230-271
-
-
Johnson, R.C.1
-
17
-
-
0036229438
-
Diversity in the serine recombinases
-
Smith,M.C.M. and Thorpe,H.M. (2002) Diversity in the serine recombinases. Mol. Microbiol., 44, 299-307.
-
(2002)
Mol. Microbiol
, vol.44
, pp. 299-307
-
-
Smith, M.C.M.1
Thorpe, H.M.2
-
18
-
-
0030854115
-
The resolvase/invertase domain of the site-specific recombinase TnpX is functional and recognizes a target sequence that resembles the junction of the circular form of the Clostridium perfringens transposon Tn4451
-
Crellin,P.K. and Rood,J.I. (1997) The resolvase/invertase domain of the site-specific recombinase TnpX is functional and recognizes a target sequence that resembles the junction of the circular form of the Clostridium perfringens transposon Tn4451. J. Bacteriol., 179, 5148-5156.
-
(1997)
J. Bacteriol
, vol.179
, pp. 5148-5156
-
-
Crellin, P.K.1
Rood, J.I.2
-
19
-
-
0036967195
-
Mechanism of integration and excision in conjugative transposons
-
Mullany,P., Roberts,A.P. and Wang,H. (2002) Mechanism of integration and excision in conjugative transposons. Cell. Mol. Life Sci., 59 2017-2022.
-
(2002)
Cell. Mol. Life Sci
, vol.59
, pp. 2017-2022
-
-
Mullany, P.1
Roberts, A.P.2
Wang, H.3
-
20
-
-
0034462083
-
The large resolvase TndX is required and sufficient for integration and excision of derivatives of the novel conjugative transposon Tn5397
-
Wang,H. and Mullany,P. (2000) The large resolvase TndX is required and sufficient for integration and excision of derivatives of the novel conjugative transposon Tn5397. J. Bacteriol., 182, 6577-6583.
-
(2000)
J. Bacteriol
, vol.182
, pp. 6577-6583
-
-
Wang, H.1
Mullany, P.2
-
21
-
-
1642483709
-
The large resolvase TnpX is the only transposon-encoded protein required for transposition of the Tn4451/3 family of integrative mobilizable elements
-
Lyras,D., Adams,V., Lucet,I. and Rood,J.I. (2004) The large resolvase TnpX is the only transposon-encoded protein required for transposition of the Tn4451/3 family of integrative mobilizable elements. Mol. Microbiol., 51, 1787-1800.
-
(2004)
Mol. Microbiol
, vol.51
, pp. 1787-1800
-
-
Lyras, D.1
Adams, V.2
Lucet, I.3
Rood, J.I.4
-
22
-
-
33746382212
-
Mechanisms of site-specific recombination
-
Grindley,N.D.F., Whiteson,K.L. and Rice,P.A. (2006) Mechanisms of site-specific recombination. Ann. Rev. Biochem., 75, 567-605.
-
(2006)
Ann. Rev. Biochem
, vol.75
, pp. 567-605
-
-
Grindley, N.D.F.1
Whiteson, K.L.2
Rice, P.A.3
-
23
-
-
18844367126
-
Synapsis in phage Bxb1 integration: Selection mechanism for the correct pair of recombination sites
-
Ghosh,P., Pannunzio,N.R. and Hatfull,G.F. (2005) Synapsis in phage Bxb1 integration: Selection mechanism for the correct pair of recombination sites. J. Mol. Biol., 349, 331-348.
-
(2005)
J. Mol. Biol
, vol.349
, pp. 331-348
-
-
Ghosh, P.1
Pannunzio, N.R.2
Hatfull, G.F.3
-
24
-
-
0344413517
-
The orientation of mycobacteriophage Bxb1 integration is solely dependent on the central dinucleotide of attP and attB
-
Ghosh,P., Kim,A.I. and Hatfull,G.F. (2003) The orientation of mycobacteriophage Bxb1 integration is solely dependent on the central dinucleotide of attP and attB. Mol. Cell, 12, 1101-1111.
-
(2003)
Mol. Cell
, vol.12
, pp. 1101-1111
-
-
Ghosh, P.1
Kim, A.I.2
Hatfull, G.F.3
-
25
-
-
3042525132
-
Synapsis and DNA cleavage in φC31 integrase-mediated site-specific recombination
-
Smith,M.C., Till,R., Brady,K., Soultanas,P., Thorpe,H. and Smith,M.C.M. (2004) Synapsis and DNA cleavage in φC31 integrase-mediated site-specific recombination. Nucleic Acids Res., 32, 2607-2617.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2607-2617
-
-
Smith, M.C.1
Till, R.2
Brady, K.3
Soultanas, P.4
Thorpe, H.5
Smith, M.C.M.6
-
26
-
-
1642565399
-
Switching the polarity of a bacteriophage integration system
-
Smith,M.C.A., Till,R. and Smith,M.C.M. (2004) Switching the polarity of a bacteriophage integration system. Mol. Microbiol., 51, 1719-1728.
-
(2004)
Mol. Microbiol
, vol.51
, pp. 1719-1728
-
-
Smith, M.C.A.1
Till, R.2
Smith, M.C.M.3
-
27
-
-
0033745097
-
Control of directionality in the site-specific recombination system of the Streptomyces phage φC31
-
Thorpe,H.M., Wilson,S.E. and Smith,M.C.M. (2000) Control of directionality in the site-specific recombination system of the Streptomyces phage φC31. Mol. Microbiol., 38, 232-241.
-
(2000)
Mol. Microbiol
, vol.38
, pp. 232-241
-
-
Thorpe, H.M.1
Wilson, S.E.2
Smith, M.C.M.3
-
28
-
-
33746067894
-
Implications of structures of synaptic tetramers of gamma delta resolvase for the mechanism of recombination
-
Kamtekar,S., Ho,R.S., Cocco,M.J., Li,W., Wenwieser,S.V., Boocock,M.R., Grindley,N.D.F. and Steitz,T.A. (2006) Implications of structures of synaptic tetramers of gamma delta resolvase for the mechanism of recombination. Proc. Natl Acad. Sci. USA, 103, 10642-10647.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 10642-10647
-
-
Kamtekar, S.1
Ho, R.S.2
Cocco, M.J.3
Li, W.4
Wenwieser, S.V.5
Boocock, M.R.6
Grindley, N.D.F.7
Steitz, T.A.8
-
29
-
-
23844514076
-
Structure of a synaptic γδ resolvase tetramer covalently linked to two cleaved DNAs
-
Li,W., Kamtekar,S., Xiong,Y., Sarkis,G.J., Grindley,N.D.F. and Steitz,T.A. (2005) Structure of a synaptic γδ resolvase tetramer covalently linked to two cleaved DNAs. Science, 309, 1210-1215.
-
(2005)
Science
, vol.309
, pp. 1210-1215
-
-
Li, W.1
Kamtekar, S.2
Xiong, Y.3
Sarkis, G.J.4
Grindley, N.D.F.5
Steitz, T.A.6
-
30
-
-
0026481250
-
Catalysis by site-specific recombinases
-
Stark,W.M., Boocock,M.R. and Sherratt,D.J. (1992) Catalysis by site-specific recombinases. Trends Genet., 8, 432-439.
-
(1992)
Trends Genet
, vol.8
, pp. 432-439
-
-
Stark, W.M.1
Boocock, M.R.2
Sherratt, D.J.3
-
31
-
-
0025946533
-
Resolvase-catalysed reactions between res sites differing in the central dinucleotide of subsite I
-
Stark, W.M., Grindley,N.D.F., Hatfull,G.F. and Boocock,M.R. (1991) Resolvase-catalysed reactions between res sites differing in the central dinucleotide of subsite I. EMBO J., 10, 3541-3548.
-
(1991)
EMBO J
, vol.10
, pp. 3541-3548
-
-
Stark, W.M.1
Grindley, N.D.F.2
Hatfull, G.F.3
Boocock, M.R.4
-
32
-
-
0022006792
-
Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60 bp recombinational enhancer
-
Johnson,R.C. and Simon,M.I. (1985) Hin-mediated site-specific recombination requires two 26 bp recombination sites and a 60 bp recombinational enhancer. Cell, 41, 781-791.
-
(1985)
Cell
, vol.41
, pp. 781-791
-
-
Johnson, R.C.1
Simon, M.I.2
-
33
-
-
0032510752
-
In vitro site-specific integration of bacteriophage DNA catalyzed by a recombinase of the resolvase/ invertase family
-
Thorpe,H.M. and Smith,M.C.M. (1998) In vitro site-specific integration of bacteriophage DNA catalyzed by a recombinase of the resolvase/ invertase family. Proc. Natl Acad. Sci. USA, 95, 5505-5510.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5505-5510
-
-
Thorpe, H.M.1
Smith, M.C.M.2
-
34
-
-
15944409968
-
Integration and excision by the large serine recombinase φRv1 integrase
-
Bibb,L.A., Hancox,M.I. and Hatfull,G.F. (2005) Integration and excision by the large serine recombinase φRv1 integrase. Mol. Microbiol., 55, 1896-1910.
-
(2005)
Mol. Microbiol
, vol.55
, pp. 1896-1910
-
-
Bibb, L.A.1
Hancox, M.I.2
Hatfull, G.F.3
-
35
-
-
0142062042
-
Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene
-
Kim,A.I., Ghosh,P., Aaron,M.A., Bibb,L.A., Jain,S. and Hatfull,G.F. (2003) Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene. Mol. Microbiol., 50, 463-473.
-
(2003)
Mol. Microbiol
, vol.50
, pp. 463-473
-
-
Kim, A.I.1
Ghosh, P.2
Aaron, M.A.3
Bibb, L.A.4
Jain, S.5
Hatfull, G.F.6
-
36
-
-
34250807697
-
Sequences in attB that affect the ability of φC31 integrase to synapse and to activate DNA cleavage
-
Gupta,M., Till,R. and Smith,M.C.M. (2007) Sequences in attB that affect the ability of φC31 integrase to synapse and to activate DNA cleavage. Nucleic Acids Res., 35, 3407-3419.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3407-3419
-
-
Gupta, M.1
Till, R.2
Smith, M.C.M.3
-
37
-
-
33745192630
-
Control of phage Bxb1 excision by a novel recombination directionality factor
-
Ghosh,P., Wasil,L.R. and Hatfull,G.F. (2006) Control of phage Bxb1 excision by a novel recombination directionality factor. PLoS Biol. 4, e186.
-
(2006)
PLoS Biol
, vol.4
-
-
Ghosh, P.1
Wasil, L.R.2
Hatfull, G.F.3
-
38
-
-
42149195988
-
Two-step site selection for serine-integrase-mediated excision: DNA-directed iotegrase conformation and central dinucleotide proofreading
-
Ghosh,P., Bibb,L.A. and Hatfull,G.F. (2008) Two-step site selection for serine-integrase-mediated excision: DNA-directed iotegrase conformation and central dinucleotide proofreading. Proc. Natl Acad. Sci. USA, 105, 3238-3243.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 3238-3243
-
-
Ghosh, P.1
Bibb, L.A.2
Hatfull, G.F.3
-
40
-
-
0035008830
-
Site-specific genomic integration in mammalian cells mediated by phage φC31 integrase
-
Thyagarajan,B., Olivares,E.C., Hollis,R.P., Ginsburg,D.S. and Calos,M.P. (2001) Site-specific genomic integration in mammalian cells mediated by phage φC31 integrase. Mol. Cell Biol., 21, 3926-3934.
-
(2001)
Mol. Cell Biol
, vol.21
, pp. 3926-3934
-
-
Thyagarajan, B.1
Olivares, E.C.2
Hollis, R.P.3
Ginsburg, D.S.4
Calos, M.P.5
-
41
-
-
0034663597
-
Application of multiple sequence alignment profiles to improve protein secondary structure prediction
-
Cuff,J.A. and Barton,G.J. (2000) Application of multiple sequence alignment profiles to improve protein secondary structure prediction. Proteins, 40, 502-511.
-
(2000)
Proteins
, vol.40
, pp. 502-511
-
-
Cuff, J.A.1
Barton, G.J.2
-
42
-
-
0030960276
-
Predicting coiled-coil regions in proteins
-
Lupas,A. (1997) Predicting coiled-coil regions in proteins. Curr. Opin. Struct. Biol., 7, 388-393.
-
(1997)
Curr. Opin. Struct. Biol
, vol.7
, pp. 388-393
-
-
Lupas, A.1
-
43
-
-
4344575287
-
Coiled coil domains: Stability, specificity, and biological implications
-
Mason,J.M. and Amdt,K.M. (2004) Coiled coil domains: Stability, specificity, and biological implications. Chembiochem., 5, 170-176.
-
(2004)
Chembiochem
, vol.5
, pp. 170-176
-
-
Mason, J.M.1
Amdt, K.M.2
-
44
-
-
4344673752
-
DNA binding properties of TnpX indicate that different synapses are formed in the excision and integration of the Tn4451 family
-
Adams,V., Lucet,I.S., Lyras,D. and Rood,J.I. (2004) DNA binding properties of TnpX indicate that different synapses are formed in the excision and integration of the Tn4451 family. Mol. Microbiol., 53, 1195-1207.
-
(2004)
Mol. Microbiol
, vol.53
, pp. 1195-1207
-
-
Adams, V.1
Lucet, I.S.2
Lyras, D.3
Rood, J.I.4
-
45
-
-
1442276353
-
Activating mutations of Tn3 resolvase marking interfaces important in recombination catalysis and its regulation
-
Burke,M.E., Arnold,P.H., He,J., Wenwieser,S.V., Rowland,S.J., Boocock,M.R. and Stark,W.M. (2004) Activating mutations of Tn3 resolvase marking interfaces important in recombination catalysis and its regulation. Mol. Microbiol., 51, 937-948.
-
(2004)
Mol. Microbiol
, vol.51
, pp. 937-948
-
-
Burke, M.E.1
Arnold, P.H.2
He, J.3
Wenwieser, S.V.4
Rowland, S.J.5
Boocock, M.R.6
Stark, W.M.7
-
46
-
-
0034785862
-
A model for the γδ resolvase synaptic complex
-
Sarkis,G.J., Murley,L.L., Leschziner,A.E., Boocock,M.R., Stark,W.M. and Grindley,N.D.F. (2001) A model for the γδ resolvase synaptic complex. Mol. Cell, 8, 623-631.
-
(2001)
Mol. Cell
, vol.8
, pp. 623-631
-
-
Sarkis, G.J.1
Murley, L.L.2
Leschziner, A.E.3
Boocock, M.R.4
Stark, W.M.5
Grindley, N.D.F.6
|