Phytophthora quercetorum sp. nov., a novel species isolated from eastern and north-central USA oak forest soils

Mycological Research

Volumn 112, Issue 8, 2008, Pages 906-916

  Balci, Yilmaz ^a   Balci, Selin ^a   Blair, Jaime E ^b   Park, Sook Young ^c   Kang, Seogchan ^c   Macdonald, William L ^a  

^a WEST VIRGINIA UNIVERSITY   (United States)

^b AMHERST COLLEGE   (United States)

^c PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Forest pathology; Oak decline; Oomycetes; Oomycota; Quercus

Indexed keywords

FUNGAL PROTEIN;

BAIT; CLADISTICS; DECIDUOUS FOREST; FOREST SOIL; FUNGUS; MORPHOLOGY; PATHOLOGY; POPULATION DECLINE; RHIZOSPHERE; SPORE;

ARTICLE; CHEMISTRY; CLASSIFICATION; CYTOLOGY; ECOLOGY; FUNGUS SPORE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; OAK; PHYLOGENY; PHYSIOLOGY; PHYTOPHTHORA; TREE; UNITED STATES;

ECOLOGY; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PHYTOPHTHORA; QUERCUS; SOIL MICROBIOLOGY; SPORES, FUNGAL; TREES; UNITED STATES;

NORTH AMERICA; UNITED STATES;

OOMYCETES; PHYTOPHTHORA; PHYTOPHTHORA ARECAE; PHYTOPHTHORA MEGAKARYA; PHYTOPHTHORA PALMIVORA; PHYTOPHTHORA QUERCINA; QUERCUS; QUERCUS MACROCARPA; QUERCUS PHELLOS; QUERCUS RUBRA;

EID: 47149100662     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2008.02.008     Document Type: Article

References (32)

1. Balci Y., Balci S., Eggers J., MacDonald W.L., Juzwik J., Long R.P., and Gottschalk K.W. Phytophthora species associated with forest soils in Eastern and North-central U.S. oak ecosystems. Plant Disease 91 (2007) 705-710
2. Balci Y., and Halmschlager E. Incidence of Phytophthora species in oak forests in Austria and their possible involvement in oak decline. Forest Pathology 33 (2003) 157-174
3. Balci Y., and Halmschlager E. Phytophthora species in oak ecosystems in Turkey and their association with declining oak trees. Plant Pathology 52 (2003) 694-702
4. Blair J.E., Coffey M.D., Park S.-Y., Geiser D.M., and Kang S. A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genetics and Biology 45 (2008) 266-277
5. Brasier C.M., Beales P.A., Kirk S.A., Denman S., and Rose J. Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesion on forest trees and foliar necrosis of ornamentals in the UK. Mycological Research 109 (2005) 853-859
6. Brasier C.M., Robredo F., and Ferraz J.F.P. Evidence for Phytophthora cinnamomi involvement in Iberian oak decline. Plant Pathology 42 (1993) 140-145
7. Cooke D.E.L., Drenth A., Duncan J.M., Wagels G., and Brasier C.M. A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology 30 (2000) 17-32
8. Cooke D.E.L., Jung T., Williams N.A., Schubert R., Oßwald W., and Duncan J.M. Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. Forest Pathology 35 (2005) 57-70
9. De Cock A.W.A.M., and Levesque C.A. New species of Pythium and Phytophthora. Studies in Mycology 50 (2004) 481-487
10. Delatour C. Phytophthora in the European oak forest-results of a European Union research project. In: McComb J.A., Hardy G.E., and Tommerup I.C. (Eds). Phytophthora in Forests & Natural Ecosystems. 2nd International IUFRO Working Party 7.02.09 Meeting, Albany, W. Australia 30 Sep - 5 Oct 2001 (2003), Murdoch University Print, Perth 78-88
11. Erwin C.D., and Ribeiro O.K. Phytophthora Diseases Worldwide (1996), The American Phytopathological Society Press, St Paul, MN
12. Hansen E.M., Reeser P.W., Davidson J.M., Garbelotto M., Ivors K., Douhan L., and Rizzo D.M. Phytophthora nemarosa, a new species causing cankers and leaf blight of forest trees in California and Oregon, USA. Mycotaxon 88 (2003) 129-138
13. Jönsson U. Phytophthora species and oak decline - can a weak competitor cause significant root damage in a nonsterilized acidic forest soil. New Phytologist 162 (2004) 211-222
14. Jönsson U., Jung T., Sonesson K., and Rosengren U. Relationships between health of Quercus robur, occurrence of Phytophthora species and site conditions in southern Sweden. Plant Pathology 54 (2005) 502-511
15. Jönsson U., Lundberg L., Sonesson K., and Jung T. First records of soilborne Phytophthora species in Swedish oak forests. Forest Pathology 33 (2003) 175-179
16. Jung T., Blaschke H., and Neumann P. Isolation, identification and pathogenicity of Phytophthora species from declining oak stands. European Journal of Forest Pathology 26 (1996) 253-272
17. Jung T., Blaschke H., and Oßwald W. Involvement of soilborne Phytophthora species in Central European oak decline and the effect of site factors on the disease. Plant Pathology 49 (2000) 706-718
18. Jung T., Cooke D.E.L., Blaschke H., Duncan J.M., and Oßwald W. Phytophthora quercina sp. nov., causing root rot of European oaks. Mycological Research 103 (1999) 785-798
19. Jung T., Hansen E.M., Winton L., Oßwald W., and Delatour C. Three new species of Phytophthora from European oak forests. Mycological Research 106 (2002) 397-411
20. Jung T., Nechwatal J., Cooke D.E.L., Hartmann G., Blaschke M., Oßwald W., Duncan J.M., and Delatour C. Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe. Mycological Research 107 (2003) 772-789
21. Maseko B., Burgess T.I., Caoutinho T.A., and Wingfield M.J. Two new species of Phytophthora from South African Eucalyptus plantations. Mycological Research 111 (2007) 1321-1338
22. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
23. Rizzo D.M., Garbelotto M., Davidson J.M., Slaughter G.W., and Kike T. Phytophthora ramorum as the cause of extensive mortality of Quercus sp. and Lithocarpus densiflorus in California. Plant Disease 86 (2002) 205-214
24. Robin C., Desprez-Loustau M.L., Capron G., and Delatour C. First record of Phytophthora cinnamomi on cork and holm oaks in France and evidence of pathogenicity. Annales des Sciences Forestiére 55 (1998) 869-883
25. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
26. Swofford D.L. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4 (1998), Sinauer Associates, Sunderland, MA
27. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25 (1997) 4876-4882
28. Vettraino A.M., Barzanti G.P., Bianco M.C., Ragazzi A., Capretti P., Paoletti E., Luisi N., Anselmi N., and Vannini A. Occurrence of Phytophthora species in oak stands in Italy and their association with declining oak trees. Forest Pathology 32 (2002) 19-28
29. Voglmayr H. Phylogenetic relationship of Peronospora and related genera based on nuclear ribosomal ITS sequences. Mycological Research 107 (2003) 1132-1142
30. Waterhouse G.M. Key to the species of Phytophthora de Bary. Mycological Papers 92 (1963) 1-22
31. White T.J., Bruns T., Lee S., and Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds). PCR Protocols: a guide to methods and applications (1990), Academic Press, San Diego 315-322
32. Werres S., Marwitz R., Man in't Veld W.A., de Cock A.W.A.M., Bonants P.J.M., deWeerdt M., Themann K., Illieva E., and Baayen R.P. Phytophthora ramorum sp. nov., a new pathogen on Rhododendron and Viburnum. Mycological Research 105 (2001) 1155-1165