-
2
-
-
0036668274
-
Arthropod Hox genes: Insights on the evolutionary forces that shape gene functions
-
Averof M (2002) Arthropod Hox genes: insights on the evolutionary forces that shape gene functions. Curr Opin Genet Dev 12:386-392
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 386-392
-
-
Averof, M.1
-
4
-
-
33748473348
-
The genomic rate of adaptive evolution
-
Eyre-Walker A (2006) The genomic rate of adaptive evolution Trends Ecol Evol 21:569-575
-
(2006)
Trends Ecol Evol
, vol.21
, pp. 569-575
-
-
Eyre-Walker, A.1
-
5
-
-
0033911640
-
Hitchhicking under positive Darwinian selection
-
Fay JC, Wu CI (2000) Hitchhicking under positive Darwinian selection. Genetics 155:1405-1413
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.I.2
-
6
-
-
0000076282
-
The sheltering of lethals
-
Fisher RA (1935) The sheltering of lethals. Am Nat 69:446-455
-
(1935)
Am Nat
, vol.69
, pp. 446-455
-
-
Fisher, R.A.1
-
7
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
8
-
-
0031989115
-
Genetic redundancy in vertebrates: Polyploidy and persistence of genes encoding multidomain proteins
-
Gibson TJ, Spring J (1998) Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins. Trends Genet 14:46-49
-
(1998)
Trends Genet
, vol.14
, pp. 46-49
-
-
Gibson, T.J.1
Spring, J.2
-
9
-
-
0002281363
-
The part played by recurrent mutation in evolution
-
Haldane JBS (1933) The part played by recurrent mutation in evolution. Am Nat 67:5-19
-
(1933)
Am Nat
, vol.67
, pp. 5-19
-
-
Haldane, J.B.S.1
-
10
-
-
0023612034
-
Estimating the recombination parameter of a finite population model without selection
-
Hudson RR (1987) Estimating the recombination parameter of a finite population model without selection. Genet Res Cambr 50:245-250
-
(1987)
Genet Res Cambr
, vol.50
, pp. 245-250
-
-
Hudson, R.R.1
-
11
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson RR (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
12
-
-
0026512283
-
A statistical test for detecting geographic subdivision
-
Hudson RR, Boos D, Kaplan NL (1992) A statistical test for detecting geographic subdivision. Mol Biol Evol 9:138-151
-
(1992)
Mol Biol Evol
, vol.9
, pp. 138-151
-
-
Hudson, R.R.1
Boos, D.2
Kaplan, N.L.3
-
13
-
-
21144433991
-
Gene duplication and the origin of novel proteins
-
Hughes AL (2005) Gene duplication and the origin of novel proteins. Proc Natl Acad Sci USA 102:8791-8792
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 8791-8792
-
-
Hughes, A.L.1
-
14
-
-
0037297697
-
The coalescent and infinite-site model of a small multigene family
-
Innan H (2003) The coalescent and infinite-site model of a small multigene family. Genetics 163:803-810
-
(2003)
Genetics
, vol.163
, pp. 803-810
-
-
Innan, H.1
-
15
-
-
33748893390
-
A sequence-tagged linkage map of Brassica rapa
-
Kim JS, Chung TY, King GJ, Jin M, Yang TJ, Jin YM, Kim HI, Park BS (2006) A sequence-tagged linkage map of Brassica rapa. Genetics 174:29-39
-
(2006)
Genetics
, vol.174
, pp. 29-39
-
-
Kim, J.S.1
Chung, T.Y.2
King, G.J.3
Jin, M.4
Yang, T.J.5
Jin, Y.M.6
Kim, H.I.7
Park, B.S.8
-
16
-
-
46649118149
-
Association between COL1 and flowering time in Brassica nigra: Replication, validation and genotypic disequilibrium
-
(in press)
-
Krouchi F, Gustavsson S, Sjödin P, Kruskopf-Österberg M, Lagercrantz U, Lascoux M (2008) Association between COL1 and flowering time in Brassica nigra: replication, validation and genotypic disequilibrium. Int J Plant Sci (in press)
-
(2008)
Int J Plant Sci
-
-
Krouchi, F.1
Gustavsson, S.2
Sjödin, P.3
Kruskopf-Österberg, M.4
Lagercrantz, U.5
Lascoux, M.6
-
17
-
-
0036266437
-
Naturally occurring indel variation in the B. nigra COL1 gene is associated with variation in flowering time
-
Kruskopf-Österberg M, Shavorskaya O, Lascoux M, Lagercrantz U (2002) Naturally occurring indel variation in the B. nigra COL1 gene is associated with variation in flowering time. Genetics 161:299-306
-
(2002)
Genetics
, vol.161
, pp. 299-306
-
-
Kruskopf-Österberg, M.1
Shavorskaya, O.2
Lascoux, M.3
Lagercrantz, U.4
-
18
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
19
-
-
0031771373
-
Comparative mapping between Arabidopis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements
-
Lagercrantz U (1998) Comparative mapping between Arabidopis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics 150:1217-1228
-
(1998)
Genetics
, vol.150
, pp. 1217-1228
-
-
Lagercrantz, U.1
-
20
-
-
0033795427
-
Rapid evolution of the family of CONSTANS LIKE genes in plants
-
Lagercrantz U, Axelsson T (2000) Rapid evolution of the family of CONSTANS LIKE genes in plants. Mol Biol Evol 17:1499-1507
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1499-1507
-
-
Lagercrantz, U.1
Axelsson, T.2
-
21
-
-
0030045268
-
Comparative mapping in Arabidopsis and Brassica, congruence of genes controlling flowering time
-
Lagercrantz U, Putterill J, Coupland G, Lydiate D (1996) Comparative mapping in Arabidopsis and Brassica, congruence of genes controlling flowering time. Plant J 9:13-20
-
(1996)
Plant J
, vol.9
, pp. 13-20
-
-
Lagercrantz, U.1
Putterill, J.2
Coupland, G.3
Lydiate, D.4
-
22
-
-
0036728257
-
Sequence variation and haplotype structure at the putative flowering-time locus COL1 of Brassica nigra
-
Lagercrantz U, Kruskopf-Österberg M, Lascoux M (2002) Sequence variation and haplotype structure at the putative flowering-time locus COL1 of Brassica nigra. Mol Biol Evol 19:1474-1482
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1474-1482
-
-
Lagercrantz, U.1
Kruskopf-Österberg, M.2
Lascoux, M.3
-
23
-
-
0035007091
-
Analysis of the function of two circadian-regulated CONSTANS-LIKE genes
-
Ledger S, Strayer C, Ashton F, Kay SA, Putterill J (2001) Analysis of the function of two circadian-regulated CONSTANS-LIKE genes. Plant J 26:15-22
-
(2001)
Plant J
, vol.26
, pp. 15-22
-
-
Ledger, S.1
Strayer, C.2
Ashton, F.3
Kay, S.A.4
Putterill, J.5
-
24
-
-
36348978330
-
Quantitative trait loci for flowering time and morphological traits in multiple populations of Brassica rapa
-
Lou P, Zhao J, Kim JS, Shen S, Del Carpio DP, Song X, Jin M, Vreugdenhil D, Wang X, Koornneef M, Bonnema G (2007) Quantitative trait loci for flowering time and morphological traits in multiple populations of Brassica rapa. J Exp Bot 58:4005-4016
-
(2007)
J Exp Bot
, vol.58
, pp. 4005-4016
-
-
Lou, P.1
Zhao, J.2
Kim, J.S.3
Shen, S.4
Del Carpio, D.P.5
Song, X.6
Jin, M.7
Vreugdenhil, D.8
Wang, X.9
Koornneef, M.10
Bonnema, G.11
-
25
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
26
-
-
17844379449
-
Chromosome triplication found across the tribe Brassiceae
-
Lysak M, Koch M, Pecinka A, Schubert I (2005) Chromosome triplication found across the tribe Brassiceae. Genome Res 15:516-525
-
(2005)
Genome Res
, vol.15
, pp. 516-525
-
-
Lysak, M.1
Koch, M.2
Pecinka, A.3
Schubert, I.4
-
27
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald JH, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
28
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R (2005) Molecular signatures of natural selection. Annu Rev Genet 39:197-218
-
(2005)
Annu Rev Genet
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
30
-
-
33846796295
-
Mapping and characterization of FLC homologs and QTL analysis of flowering time in Brassica oleracea
-
Okazaki K, Sakamoto K, Kikuchi R, Saito A, Togashi E, Kuginuki Y, Matsumoto S, Hirai M (2007) Mapping and characterization of FLC homologs and QTL analysis of flowering time in Brassica oleracea. Theor Appl Genet 114:595-608
-
(2007)
Theor Appl Genet
, vol.114
, pp. 595-608
-
-
Okazaki, K.1
Sakamoto, K.2
Kikuchi, R.3
Saito, A.4
Togashi, E.5
Kuginuki, Y.6
Matsumoto, S.7
Hirai, M.8
-
31
-
-
31544442199
-
Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopis thaliana
-
Parkin IAP, Gulden SM, Sharpe AG, Lukens L, Trick M, Osborn TC, Lydiate DJ (2005) Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopis thaliana. Genetics 171:765-781
-
(2005)
Genetics
, vol.171
, pp. 765-781
-
-
Parkin, I.A.P.1
Gulden, S.M.2
Sharpe, A.G.3
Lukens, L.4
Trick, M.5
Osborn, T.C.6
Lydiate, D.J.7
-
32
-
-
0028927730
-
The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors
-
Putterill J, Robson F, LeeK, Simon R, Coupland G (1995) The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors. Cell 80:847-857
-
(1995)
Cell
, vol.80
, pp. 847-857
-
-
Putterill, J.1
Robson, F.2
Lee, K.3
Simon, R.4
Coupland, G.5
-
33
-
-
0001265601
-
The flowering time gene CONSTANS and homologue CONSTANS LIKE 1 (Accession no. Y10555 and Y10556) exist as a tandem repeat on chromosome 5 of Arabidopsis
-
Putterill J, Ledger S, Lee K, Robson F, Murphy G, Coupland G (1997) The flowering time gene CONSTANS and homologue CONSTANS LIKE 1 (Accession no. Y10555 and Y10556) exist as a tandem repeat on chromosome 5 of Arabidopsis. Plant Physiol 114:396
-
(1997)
Plant Physiol
, vol.114
, pp. 396
-
-
Putterill, J.1
Ledger, S.2
Lee, K.3
Robson, F.4
Murphy, G.5
Coupland, G.6
-
34
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J, Sánchez-DelBarria JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 29:2496-2497
-
(2003)
Bioinformatics
, vol.29
, pp. 2496-2497
-
-
Rozas, J.1
Sánchez-Delbarria, J.C.2
Messeguer, X.3
Rozas, R.4
-
35
-
-
0034595777
-
Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis
-
Samach A, Onouschi H, Gold SE, Ditta GS, Schwarz-Sommer Z, Yanofsky M, Coupland G (2000) Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis. Science 288:1613-1616
-
(2000)
Science
, vol.288
, pp. 1613-1616
-
-
Samach, A.1
Onouschi, H.2
Gold, S.E.3
Ditta, G.S.4
Schwarz-Sommer, Z.5
Yanofsky, M.6
Coupland, G.7
-
36
-
-
33745478966
-
Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae
-
Schranz ME, Mitchell-Olds T (2006) Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae. Plant Cell 18:1152-1165
-
(2006)
Plant Cell
, vol.18
, pp. 1152-1165
-
-
Schranz, M.E.1
Mitchell-Olds, T.2
-
37
-
-
0036859948
-
Characterization and effects of the replicated flowering time gene FLC in Brassica rapa
-
Schranz ME, Quijada P, Sung SB, Lukens L, Amasino R, Osborn TC (2002) Characterization and effects of the replicated flowering time gene FLC in Brassica rapa. Genetics 162:1457-1468
-
(2002)
Genetics
, vol.162
, pp. 1457-1468
-
-
Schranz, M.E.1
Quijada, P.2
Sung, S.B.3
Lukens, L.4
Amasino, R.5
Osborn, T.C.6
-
38
-
-
33646418983
-
Sequence divergence at the putative flowering time locus COL1 in Brassicaceae
-
Shavorskaya O, Lagercrantz U (2006) Sequence divergence at the putative flowering time locus COL1 in Brassicaceae. Mol Phylogenet Evol 39:846-854
-
(2006)
Mol Phylogenet Evol
, vol.39
, pp. 846-854
-
-
Shavorskaya, O.1
Lagercrantz, U.2
-
39
-
-
34249062678
-
Recent degeneration of an old duplicated flowering time gene in B. nigra
-
Sjödin P, Shavorskaya O, Hedman H, Finet C, Lascoux M, Lagercrantz U (2006) Recent degeneration of an old duplicated flowering time gene in B. nigra. Heredity 98:375-384
-
(2006)
Heredity
, vol.98
, pp. 375-384
-
-
Sjödin, P.1
Shavorskaya, O.2
Hedman, H.3
Finet, C.4
Lascoux, M.5
Lagercrantz, U.6
-
40
-
-
0021066244
-
Evolutionary relationship of DNA sequences in finite populations
-
Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
41
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
42
-
-
0031574072
-
The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 15:4876-4882
-
(1997)
Nucleic Acids Res
, vol.15
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
43
-
-
12344256065
-
Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster
-
Thornton K, Long M (2005) Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster. Mol Biol Evol 22:273-284
-
(2005)
Mol Biol Evol
, vol.22
, pp. 273-284
-
-
Thornton, K.1
Long, M.2
-
44
-
-
33645124787
-
Conserved functions of yeast genes support the Duplication, Degeneration and Complementation model of gene duplication
-
Van Hoof A (2005) Conserved functions of yeast genes support the Duplication, Degeneration and Complementation model of gene duplication. Genetics 171:1455-1461
-
(2005)
Genetics
, vol.171
, pp. 1455-1461
-
-
Van Hoof, A.1
-
45
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson GA (1975) On the number of segregating sites in genetical models without recombination. Theor Pop Biol 7:256-276
-
(1975)
Theor Pop Biol
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
46
-
-
0032850310
-
Simple sequence repeat (SSR)-based marker variation in Brassica nigra genebank accessions and weed populations
-
Westman AL, Kresovich S (1999) Simple sequence repeat (SSR)-based marker variation in Brassica nigra genebank accessions and weed populations. Euphytica 109:85-92
-
(1999)
Euphytica
, vol.109
, pp. 85-92
-
-
Westman, A.L.1
Kresovich, S.2
-
47
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl BioSci 13:555-556
-
(1997)
Comput Appl BioSci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
48
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang Z, Nielsen R (2000) Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol 17:32-43
-
(2000)
Mol Biol Evol
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
49
-
-
16344378246
-
Bayes empirical Bayes inference of amino acid sites under positive selection
-
Yang Z, Wong WSW, Nielsen R (2005) Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol 22:1107-1118
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
-
50
-
-
0037500141
-
Evolution by gene duplication: An update
-
Zhang Z (2003) Evolution by gene duplication: an update. Trends Ecol Evol 18:292-298
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 292-298
-
-
Zhang, Z.1
-
51
-
-
2442418972
-
Genomic background predicts the fate of duplicated genes: Evidence from the yeast genome
-
Zhang Z, Kishino H (2004) Genomic background predicts the fate of duplicated genes: evidence from the yeast genome. Genetics 166:1995-1999
-
(2004)
Genetics
, vol.166
, pp. 1995-1999
-
-
Zhang, Z.1
Kishino, H.2
-
52
-
-
0034836991
-
Intrinsically driven changes in gene interaction complexity. I. Growth of regulatory complexes and increase in number of genes
-
Zuckerkandl E (2001) Intrinsically driven changes in gene interaction complexity. I. Growth of regulatory complexes and increase in number of genes. J Mol Evol 53:539-554
-
(2001)
J Mol Evol
, vol.53
, pp. 539-554
-
-
Zuckerkandl, E.1
|