메뉴 건너뛰기




Volumn 169, Issue 9, 2008, Pages 1229-1237

Association between COL1 and flowering time in Brassica nigra: replication, validation, and genotypic disequilibrium

Author keywords

Association mapping; Brassica nigra; CONSTANS; Flowering time; Indel; Linkage disequilibrium

Indexed keywords

FLOWERING; GENOTYPE; HERB; HETEROZYGOSITY; POLYMORPHISM;

EID: 46649118149     PISSN: 10585893     EISSN: None     Source Type: Journal    
DOI: 10.1086/591989     Document Type: Article
Times cited : (2)

References (38)
  • 1
    • 33646443682 scopus 로고    scopus 로고
    • Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes
    • Aranzana MJ, S Kim, K Zhao, E Bakker, M Horton, K Jakob, C Lister, et al 2005 Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLoS Genet 1:e60.
    • (2005) PLoS Genet , vol.1
    • Aranzana, M.J.1    Kim, S.2    Zhao, K.3    Bakker, E.4    Horton, M.5    Jakob, K.6    Lister, C.7
  • 2
    • 0031202659 scopus 로고    scopus 로고
    • A deletion in the PHYD gene of the Arabidopsis Wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing
    • Aukerman MJ, M Hirschfeld, L Wester, M Weaver, T Clack, RM Amasino, RA Sharrock 1997 A deletion in the PHYD gene of the Arabidopsis Wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing. Plant Cell 9:1317-1326.
    • (1997) Plant Cell , vol.9 , pp. 1317-1326
    • Aukerman, M.J.1    Hirschfeld, M.2    Wester, L.3    Weaver, M.4    Clack, T.5    Amasino, R.M.6    Sharrock, R.A.7
  • 4
    • 2942644876 scopus 로고    scopus 로고
    • Multiple pathways in the decision to flower: Enabling, promoting and resetting
    • Boss PK, RM Bastow, JS Mylne, C Dean 2004 Multiple pathways in the decision to flower: enabling, promoting and resetting. Plant Cell 16:S18-S31.
    • (2004) Plant Cell , vol.16
    • Boss, P.K.1    Bastow, R.M.2    Mylne, J.S.3    Dean, C.4
  • 6
    • 0026856116 scopus 로고
    • A computer program for testing pairwise linkage disequilibria in subdivided populations
    • Garnier-Géré P, C Dillmann 1992 A computer program for testing pairwise linkage disequilibria in subdivided populations. J Hered 83:239.
    • (1992) J Hered , vol.83 , pp. 239
    • Garnier-Géré, P.1    Dillmann, C.2
  • 7
    • 34249011844 scopus 로고    scopus 로고
    • How repeatable are associations between polymorphisms in achaete-scute and bristle number variation in Drosophila?
    • Gruber JD, A Genissel, SJ Macdonald, AD Long 2007 How repeatable are associations between polymorphisms in achaete-scute and bristle number variation in Drosophila? Genetics 175:1987-1997.
    • (2007) Genetics , vol.175 , pp. 1987-1997
    • Gruber, J.D.1    Genissel, A.2    Macdonald, S.J.3    Long, A.D.4
  • 8
    • 3042527892 scopus 로고    scopus 로고
    • The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice
    • Hayama R, G Coupland 2004 The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice. Plant Physiol 135:677-684.
    • (2004) Plant Physiol , vol.135 , pp. 677-684
    • Hayama, R.1    Coupland, G.2
  • 9
    • 24644446846 scopus 로고    scopus 로고
    • A standardized genetic differentiation measure
    • Hedrick PW 2005 A standardized genetic differentiation measure. Evolution 59:1633-1638.
    • (2005) Evolution , vol.59 , pp. 1633-1638
    • Hedrick, P.W.1
  • 10
    • 0036808829 scopus 로고    scopus 로고
    • Hd3, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions
    • Kojima S, Y Takahashi, Y Kobayashi, L Monna, T Sasaki, T Araki, M Yano 2002 Hd3, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol 43:1096-1105.
    • (2002) Plant Cell Physiol , vol.43 , pp. 1096-1105
    • Kojima, S.1    Takahashi, Y.2    Kobayashi, Y.3    Monna, L.4    Sasaki, T.5    Araki, T.6    Yano, M.7
  • 11
    • 0036266437 scopus 로고    scopus 로고
    • Naturally occurring indel variation in the B. nigra COL1 gene is associated with variation in flowering time
    • Kruskopf-Österberg M, OShavorskaya, M Lascoux, U Lagercrantz 2002 Naturally occurring indel variation in the B. nigra COL1 gene is associated with variation in flowering time. Genetics 161:299-306.
    • (2002) Genetics , vol.161 , pp. 299-306
    • Kruskopf-Österberg, M.1    OShavorskaya, M.2    Lascoux, U.L.3
  • 12
    • 0036728257 scopus 로고    scopus 로고
    • Sequence variation and haplotype structure in the flowering time locus COL1 of Brassica nigra
    • Lagercrantz U, M Kruskopf-Österberg, M Lascoux 2002 Sequence variation and haplotype structure in the flowering time locus COL1 of Brassica nigra. Mol Biol Evol 19:1474-1482.
    • (2002) Mol Biol Evol , vol.19 , pp. 1474-1482
    • Lagercrantz, U.1    Kruskopf-Österberg, M.2    Lascoux, M.3
  • 13
    • 0030045268 scopus 로고    scopus 로고
    • Comparative mapping in Arabidopsis and Brassica, congruence of genes controlling flowering time
    • Lagercrantz U, J Putterill, G Coupland, D Lydiate 1996 Comparative mapping in Arabidopsis and Brassica, congruence of genes controlling flowering time. Plant J 9:13-20.
    • (1996) Plant J , vol.9 , pp. 13-20
    • Lagercrantz, U.1    Putterill, J.2    Coupland, G.3    Lydiate, D.4
  • 14
    • 0035007091 scopus 로고    scopus 로고
    • Analysis of the function of two circadian-regulated CONSTANS-LIKE genes
    • Ledger S, C Stryer, F Ahton, SA Kay, J Putterill 2001 Analysis of the function of two circadian-regulated CONSTANS-LIKE genes. Plant J 26:15-22.
    • (2001) Plant J , vol.26 , pp. 15-22
    • Ledger, S.1    Stryer, C.2    Ahton, F.3    Kay, S.A.4    Putterill, J.5
  • 15
    • 56749095140 scopus 로고    scopus 로고
    • Lempe J, S Balasubramanian, S Sureshkumar, A Singh, M Schmid, D Weigel 2005 Diversity of flowering responses in wild Arabidopsis thaliana strains. PLoS Genetics 11:e6.
    • Lempe J, S Balasubramanian, S Sureshkumar, A Singh, M Schmid, D Weigel 2005 Diversity of flowering responses in wild Arabidopsis thaliana strains. PLoS Genetics 11:e6.
  • 16
    • 56749138194 scopus 로고    scopus 로고
    • AFLP: Studies on plant development
    • M Innis, D Gelfand, J Sninsky, eds, Academic Press, San Diego, CA
    • Liscum E 1999 AFLP: studies on plant development. Pages 505-519 in M Innis, D Gelfand, J Sninsky, eds. PCR methods manual. Academic Press, San Diego, CA.
    • (1999) PCR methods manual , pp. 505-519
    • Liscum, E.1
  • 18
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, M Kreitman 1991 Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 19
    • 0036277413 scopus 로고    scopus 로고
    • Control of flowering time: Interacting pathways as a basis for diversity
    • Mouradov A, F Cremer, G Coupland 2002 Control of flowering time: interacting pathways as a basis for diversity. Plant Cell 14:S111-S130.
    • (2002) Plant Cell , vol.14
    • Mouradov, A.1    Cremer, F.2    Coupland, G.3
  • 20
    • 29444452921 scopus 로고    scopus 로고
    • Molecular signatures of natural selection
    • Nielsen R 2005 Molecular signatures of natural selection. Annu Rev Genet 39:197-218.
    • (2005) Annu Rev Genet , vol.39 , pp. 197-218
    • Nielsen, R.1
  • 21
    • 1042267120 scopus 로고    scopus 로고
    • Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico
    • Pressoir G, J Berthaud 2004 Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico. Heredity 92:88-94.
    • (2004) Heredity , vol.92 , pp. 88-94
    • Pressoir, G.1    Berthaud, J.2
  • 22
    • 0001265601 scopus 로고    scopus 로고
    • The flowering time gene CONSTANS and homologue CONSTANS LIKE 1 accession no. Y10555 and Y10556 exist as a tandem repeat on chromosome 5 of Arabidopsis
    • Putterill J, S Ledger, K Lee, F Robson, G Murphy, G Coupland 1997 The flowering time gene CONSTANS and homologue CONSTANS LIKE 1 accession no. Y10555 and Y10556 exist as a tandem repeat on chromosome 5 of Arabidopsis. Plant Physiol 114:396.
    • (1997) Plant Physiol , vol.114 , pp. 396
    • Putterill, J.1    Ledger, S.2    Lee, K.3    Robson, F.4    Murphy, G.5    Coupland, G.6
  • 23
    • 0028927730 scopus 로고
    • The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors
    • Putterill J, F Robson, K Lee, G Coupland 1995 The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors. Cell 80:847-857.
    • (1995) Cell , vol.80 , pp. 847-857
    • Putterill, J.1    Robson, F.2    Lee, K.3    Coupland, G.4
  • 24
    • 56749095138 scopus 로고    scopus 로고
    • R Development Core Team 2005 R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
    • R Development Core Team 2005 R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
  • 25
    • 56749085405 scopus 로고    scopus 로고
    • Raymond M, F Rousset 1995a Genepop version 1.2: a population genetics software for exact tests and ecumenism. J Hered 86:248-249
    • Raymond M, F Rousset 1995a Genepop version 1.2: a population genetics software for exact tests and ecumenism. J Hered 86:248-249.
  • 26
    • 0029178096 scopus 로고
    • An exact test for population differentiation
    • - 1995b An exact test for population differentiation. Evolution 49:1280-1283.
    • (1995) Evolution , vol.49 , pp. 1280-1283
  • 27
    • 0021619929 scopus 로고
    • Deviations from Hardy-Weinberg proportions: Sampling variances and use in estimation of inbreeding coefficients
    • Robertson A, WG Hill 1984 Deviations from Hardy-Weinberg proportions: sampling variances and use in estimation of inbreeding coefficients. Genetics 107:713-718.
    • (1984) Genetics , vol.107 , pp. 713-718
    • Robertson, A.1    Hill, W.G.2
  • 28
    • 33746317015 scopus 로고    scopus 로고
    • How to be early-flowering: An evolutionary perspective
    • Roux F, P Touzet, J Cuguen, V LeCorre 2006 How to be early-flowering: an evolutionary perspective. Trends Plant Sci 11:1360-1365.
    • (2006) Trends Plant Sci , vol.11 , pp. 1360-1365
    • Roux, F.1    Touzet, P.2    Cuguen, J.3    LeCorre, V.4
  • 29
    • 0036859948 scopus 로고    scopus 로고
    • Characterization and effects of the replicated flowering time gene FLC in Brassica rapa
    • Schranz ME, P Quijada, SB Sung, L Lukens, R Amasino, TC Osborn 2002 Characterization and effects of the replicated flowering time gene FLC in Brassica rapa. Genetics 162:1457-1468.
    • (2002) Genetics , vol.162 , pp. 1457-1468
    • Schranz, M.E.1    Quijada, P.2    Sung, S.B.3    Lukens, L.4    Amasino, R.5    Osborn, T.C.6
  • 33
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey JD 2002 A direct approach to false discovery rates. J R Stat Soc B 64:479-498.
    • (2002) J R Stat Soc B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 34
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 35
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir BS, CC Cockerham 1984 Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 37


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.