National survey of prevalent HIV strains: Limited genetic variation of Korean HIV-1 clade B within the population of Korean men who have sex with men

Journal of Acquired Immune Deficiency Syndromes

Volumn 48, Issue 2, 2008, Pages 127-132

  Kim, Gab Jung ^a   Nam, Jeong Gu ^a   Shin, Bo Gyeong ^a   Kee, Mee Kyeong ^a   Kim, Eun Jin ^a   Lee, Joo Shil ^a   Kim, Sung Soon ^a  

^a Korea National Institute of Health   (South Korea)

Author keywords

Env gene; Evolution; Genetic variation; HIV 1; Men who have sex with men

Indexed keywords

ARTICLE; CLADISTICS; CONTROLLED STUDY; ENVELOPE GENE; GENE SEQUENCE; GENETIC VARIABILITY; HEALTH SURVEY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; HUMAN IMMUNODEFICIENCY VIRUS INFECTED PATIENT; KOREA; MAJOR CLINICAL STUDY; MALE; MALE HOMOSEXUAL; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; VIRUS STRAIN; CLASSIFICATION; FEMALE; GENETICS; HOMOSEXUALITY;

FEMALE; GENES, ENV; HIV-1; HOMOSEXUALITY, MALE; HUMANS; KOREA; MALE; PHYLOGENY; VARIATION (GENETICS);

EID: 46449132407     PISSN: 15254135     EISSN: None     Source Type: Journal    
DOI: 10.1097/QAI.0b013e31816b6ae6     Document Type: Article

References (29)

1. Jetzt AE, Yu H, Klarmann GJ, et al. High rate of recombination throughout the human immunodeficiency virus type 1 genome. J Virol. 2001;74:1234-1240.
2. Preston BD, Dougherty JP. Mechanisms of retroviral mutation. Trends Microbiol. 1996;4:16-21.
3. Chen J, Powell D, Hu W-S. High frequency of genetic recombination is a common feature of primate lentivirus replication. J Virol. 2006;80: 9651-9658.
4. Chin MP, Rhodes TD, Chen J, et al. Identification of a major restriction in HIV-1 intersubtype recombination. Proc Natl Acad Sci USA. 2005;102: 9002-9007.
5. Geretti AM. HIV-1 subtypes: epidemiology and significance for HIV management. Curr Opin Infect Dis. 2006;19:1-7.
6. Kandathil AJ, Ramalingam S, Kannangai R, et al. Molecular epidemiology of HIV. Indian J Med Res. 2005;121:333-344.
7. Ranga U. Human Immunodeficiency Virus-1 subtypes: could genetic diversity translate to differential pathogenesis? Journal of Indian Institute of Science. 2002;82:73-91.
8. Marozsan AJ, Moore DM, Lobritz MA, et al. Differences in the fitness of two diverse wild-type human immunodeficiency virus type 1 isolates are related to the efficiency of cell binding and entry. J Virol. 2005;79:7121-7134.
9. Frost SD, Liu Y, Pond SL, et al. Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype b. J Virol. 2005;79:6523-6527.
10. de Mendoza C, Rodriguez C, Corral A, et al. Evidence for differences in the sexual transmission efficiency of HIV strains with distinct drug resistance genotypes. Clin Infect Dis. 2004;39:1231-1238.
11. Phillips A. Will the drugs still work? Transmission of resistant HIV. Nat Med. 2001;7:993-994.
12. Leigh Brown AJ, Frost SD, Mathews WC, et al. Transmission fitness of drug-resistant human immunodeficiency virus and the prevalence of resistance in the antiretroviral-treated population. J Infect Dis. 2003;187: 683-686.
13. Johnson VA, Petropoulos CJ, Woods CR, et al. Vertical transmission of multidrug-resistant human immunodeficiency virus type 1 (HIV-1) and continued evolution of drug resistance in an HIV-1-infected infant. J Infect Dis. 2001;183:1688-1693.
14. Weniger BG, Takebe Y, Ou CY. The molecular epidemiology of HIV in Asia. AIDS. 1994;8(Suppl 2):S13-S28.
15. Korber B, Muldoon M, Theiler J, et al. Timing the ancestor of the HIV-1 pandemic strains. Science. 2000;288:1789-1796.
16. Korean Center for Disease Control. Periodical Report. Seoul, Korea. Korea Center for Disease Control and Prevention, 2007.
17. Kang MR, Cho YK, Chun J, et al. Phylogenetic analysis of the nef gene reveals a distinctive monophyletic clade in Korean HIV-1 cases. J Acquir Immune Defic Syndr Hum Retrovirol. 1998;17:58-68.
18. Kim YB, Cho YK, Lee HJ, et al. Molecular phylogenetic analysis of human immunodeficiency virus type 1 strains obtained from Korean patients: env gene sequences. AIDS Res Hum Retroviruses. 1999;15:303-307.
19. Delwart EL, Shpaer EG, Louwagie J, et al. Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes. Science. 1993;262:1257-1261.
20. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406-425.
21. Bello G, Guimaraes ML, Morgado MG. Evolutionary history of HIV-1 subtype B and F infection in Brazil. AIDS. 2006;20:763-768.
22. Lee JS, Nam JG, Kim EY, et al. Introduction of HIV type 1 subtype E virus into South Korea. AIDS Res Hum Retroviruses. 2000;16:1083-1087.
23. Daniels RS, Kang C, Patel D, et al. An HIV type 1 subtype B founder effect in Korea: gp160 signature patterns infer circulation of CTL-escape strains at the population level. AIDS Res Hum Retroviruses. 2003;19:631-641.
24. Kim YB, Cho YK. Monophyletic clade of HIV-1 subtype B in Korea: evolutionary pressure or single introduction? AIDS Res Hum Retroviruses. 2003;19:619-623.
25. Cleghorn FR, Jack N, Carr JK, et al. A distinctive clade B HIV type 1 is heterosexually transmitted in Trinidad and Tobago. Proc Natl Acad Sci USA. 2000;97:10532-10537.
26. Kuiken CL, Lukashov VV, Baan E, et al. Evidence for limited within-person evolution of the V3 domain of the HIV-1 envelope in the Amsterdam population. AIDS. 1996;10:31-37.
27. Kee MK, Park CM, Chang CG, et al. Sexual behavioral characteristics and the knowledge of HIV/AIDS among men who have sex with men in Republic of Korea. Journal of Preventive Medicine and Public Health. 2004;37:220-224.
28. Murphy G, Belda FJ, Pau CP, et al. Discrimination of subtype B and non-subtype B strains of human immunodeficiency virus type 1 by serotyping: correlation with genotyping. J Clin Microbiol. 1999;37:1356-1360.
29. Gittens MV, Roth WW, Roach T, et al. The molecular epidemiology and drug resistance determination of HIV type 1 subtype B infection in Barbados. AIDS Res Hum Retroviruses. 2003;19:313-319.