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Volumn 42, Issue 9, 2004, Pages 4223-4229

Accurate representation of the hepatitis C virus quasispecies in 5.2-kilobase amplicons

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; HEPATITIS C ANTIBODY; HETERODUPLEX; NUCLEOTIDE; VIRUS RNA;

EID: 4644279066     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.42.9.4223-4229.2004     Document Type: Article
Times cited : (24)

References (35)
  • 1
    • 0017817170 scopus 로고
    • Transmissible agent in non-A, non-B hepatitis
    • Alter, H. J., R. H. Purcell, P. V. Holland, and H. Popper. 1978. Transmissible agent in non-A, non-B hepatitis. Lancet i:459-463.
    • (1978) Lancet , vol.1 , pp. 459-463
    • Alter, H.J.1    Purcell, R.H.2    Holland, P.V.3    Popper, H.4
  • 5
    • 0032408626 scopus 로고    scopus 로고
    • Contribution of Taq polymerase-induced errors to the estimation of RNA virus diversity
    • Bracho, M. A., A. Moya, and E. Barrio. 1998. Contribution of Taq polymerase-induced errors to the estimation of RNA virus diversity. J. Gen. Virol. 79:2921-2928.
    • (1998) J. Gen. Virol. , vol.79 , pp. 2921-2928
    • Bracho, M.A.1    Moya, A.2    Barrio, E.3
  • 6
    • 0026694968 scopus 로고
    • Sequencing errors and molecular evolutionary analysis
    • Clark, A. G., and T. S. Whittam. 1992. Sequencing errors and molecular evolutionary analysis. Mol. Biol. Evol. 9:744-752.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 744-752
    • Clark, A.G.1    Whittam, T.S.2
  • 7
    • 0036136411 scopus 로고    scopus 로고
    • Evolutionary trends of the first hypervariable region of the hepatitis C virus E2 protein in individuals with differing liver disease severity
    • Curran, R., C. L. Jameson, J. K. Craggs, A. M. Grabowska, B. J. Thomson, A. Robins, W. L. Irving, and J. K. Ball. 2002. Evolutionary trends of the first hypervariable region of the hepatitis C virus E2 protein in individuals with differing liver disease severity. J. Gen. Virol. 83:11-23.
    • (2002) J. Gen. Virol. , vol.83 , pp. 11-23
    • Curran, R.1    Jameson, C.L.2    Craggs, J.K.3    Grabowska, A.M.4    Thomson, B.J.5    Robins, A.6    Irving, W.L.7    Ball, J.K.8
  • 8
    • 0032957538 scopus 로고    scopus 로고
    • PCR-mediated recombination: A general method applied to construct chimeric infectious molecular clones of plasma-derived HIV-1 RNA
    • Fang, G., B. Weiser, A. Visosky, T. Moran, and H. Burger. 1999. PCR-mediated recombination: a general method applied to construct chimeric infectious molecular clones of plasma-derived HIV-1 RNA. Nat. Med. 5:239-242.
    • (1999) Nat. Med. , vol.5 , pp. 239-242
    • Fang, G.1    Weiser, B.2    Visosky, A.3    Moran, T.4    Burger, H.5
  • 11
    • 0036532397 scopus 로고    scopus 로고
    • High-risk behaviors associated with transition from illicit non-injection to injection drug use among adolescent and young adult drug users: A case-control study
    • Fuller, C. M., D. Vlahov, D. C. Ompad, N. Shah, A. Arria, and S. A. Strathdee. 2002. High-risk behaviors associated with transition from illicit non-injection to injection drug use among adolescent and young adult drug users: a case-control study. Drug Alcohol Depend. 66:189-198.
    • (2002) Drug Alcohol Depend. , vol.66 , pp. 189-198
    • Fuller, C.M.1    Vlahov, D.2    Ompad, D.C.3    Shah, N.4    Arria, A.5    Strathdee, S.A.6
  • 12
    • 84991184625 scopus 로고
    • Degree of diversity of hepatitis C virus quasispecies and progression of liver disease
    • Honda, M., S. Kaneko, A. Sakai, M. Unoura, S. Murakami, and K. Kobayashi. 1994. Degree of diversity of hepatitis C virus quasispecies and progression of liver disease. Hepatology 20:1144-1151.
    • (1994) Hepatology , vol.20 , pp. 1144-1151
    • Honda, M.1    Kaneko, S.2    Sakai, A.3    Unoura, M.4    Murakami, S.5    Kobayashi, K.6
  • 13
    • 0033032196 scopus 로고    scopus 로고
    • Natural variation in translational activities of the 5′ nontranslated RNAs of hepatitis C virus genotypes 1a and 1b: Evidence for a long-range RNA-RNA interaction outside of the internal ribosomal entry site
    • Honda, M., R. Rijnbrand, G. Abell, D. Kim, and S. M. Lemon. 1999. Natural variation in translational activities of the 5′ nontranslated RNAs of hepatitis C virus genotypes 1a and 1b: evidence for a long-range RNA-RNA interaction outside of the internal ribosomal entry site. J. Virol. 73:4941-4951.
    • (1999) J. Virol. , vol.73 , pp. 4941-4951
    • Honda, M.1    Rijnbrand, R.2    Abell, G.3    Kim, D.4    Lemon, S.M.5
  • 14
    • 0031873372 scopus 로고    scopus 로고
    • Use of long RT-PCR to characterize splice variant mRNAs
    • Hu, Y., L. R. Tanzer, J, Cao, C. D. Geringer, and R. E. Moore. 1998. Use of long RT-PCR to characterize splice variant mRNAs. BioTechniques. 25:224-229.
    • (1998) BioTechniques , vol.25 , pp. 224-229
    • Hu, Y.1    Tanzer, L.R.2    Cao, J.3    Geringer, C.D.4    Moore, R.E.5
  • 17
    • 0033690901 scopus 로고    scopus 로고
    • Interaction between complement receptor gC1qR and hepatitis C virus core protein inhibits T-lymphocyte proliferation
    • Kittlesen, D. J., K. A. Chianese-Bullock, Z. Q. Yao, T. J. Braciale, and Y. S. Hahn. 2000. Interaction between complement receptor gC1qR and hepatitis C virus core protein inhibits T-lymphocyte proliferation. J. Clin. Invest. 106:1239-1249.
    • (2000) J. Clin. Invest. , vol.106 , pp. 1239-1249
    • Kittlesen, D.J.1    Chianese-Bullock, K.A.2    Yao, Z.Q.3    Braciale, T.J.4    Hahn, Y.S.5
  • 20
    • 0037401831 scopus 로고    scopus 로고
    • Hepatitis C virus E2 and NS5A region variability during sequential treatment with two interferon-alpha preparations
    • Mangoni, E. D., D. M. Forton, G. Ruggiero, and P. Karayiannis. 2003. Hepatitis C virus E2 and NS5A region variability during sequential treatment with two interferon-alpha preparations. J. Med. Virol. 70:62-73.
    • (2003) J. Med. Virol. , vol.70 , pp. 62-73
    • Mangoni, E.D.1    Forton, D.M.2    Ruggiero, G.3    Karayiannis, P.4
  • 21
    • 4644290575 scopus 로고    scopus 로고
    • Enhanced detection of HCV quasispecies complexity during acute seroconversion through amplification and cloning of a 5.2 kb amplicon
    • Mao, Q., O. Laeyendecker, D. Thomas, and S. Ray. 2000. Enhanced detection of HCV quasispecies complexity during acute seroconversion through amplification and cloning of a 5.2 kb amplicon. Antivir. her. 5(suppl. 1):C118.
    • (2000) Antivir. Her. , vol.5 , Issue.SUPPL. 1
    • Mao, Q.1    Laeyendecker, O.2    Thomas, D.3    Ray, S.4
  • 22
    • 0035108092 scopus 로고    scopus 로고
    • Human immunodeficiency virus seroconversion and evolution of the hepatitis C virus quasispecies
    • Mao, Q., S. C. Ray, O. Laeyendecker, J. R. Ticehurst, S. A. Strathdee, D. Vlahov, and D. L. Thomas. 2001. Human immunodeficiency virus seroconversion and evolution of the hepatitis C virus quasispecies. J. Virol. 75:3259-3267.
    • (2001) J. Virol. , vol.75 , pp. 3259-3267
    • Mao, Q.1    Ray, S.C.2    Laeyendecker, O.3    Ticehurst, J.R.4    Strathdee, S.A.5    Vlahov, D.6    Thomas, D.L.7
  • 23
    • 0026538287 scopus 로고
    • Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: Quasispecies nature of HCV genome distribution
    • Martell, M., J. I. Esteban, J. Quer, J. Genesca, A. Weiner, R. Esteban, Guardia, and J. Gomez. 1992. Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: quasispecies nature of HCV genome distribution. J. Virol. 66:3225-3229.
    • (1992) J. Virol. , vol.66 , pp. 3225-3229
    • Martell, M.1    Esteban, J.I.2    Quer, J.3    Genesca, J.4    Weiner, A.5    Esteban, R.6    Guardia7    Gomez, J.8
  • 25
    • 0034011434 scopus 로고    scopus 로고
    • Hypervariable region 1 sequence stability during hepatitis C virus replication in chimpanzees
    • Ray, S. C., Q. Mao, R. E. Lanford, S. Bassett, O. Laeyendecker, Y. M. Wang, and D. L. Thomas. 2000. Hypervariable region 1 sequence stability during hepatitis C virus replication in chimpanzees. J. Virol. 74:3058-3066.
    • (2000) J. Virol. , vol.74 , pp. 3058-3066
    • Ray, S.C.1    Mao, Q.2    Lanford, R.E.3    Bassett, S.4    Laeyendecker, O.5    Wang, Y.M.6    Thomas, D.L.7
  • 26
    • 0032976214 scopus 로고    scopus 로고
    • Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: Hypervariable region 1 as decoy
    • Ray, S. C., Y. M. Wang, O. Laeyendecker, J. Ticehurst, S. A. Villano, and D. L. Thomas. 1998. Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: hypervariable region 1 as decoy. J. Virol. 73:2938-2946.
    • (1998) J. Virol. , vol.73 , pp. 2938-2946
    • Ray, S.C.1    Wang, Y.M.2    Laeyendecker, O.3    Ticehurst, J.4    Villano, S.A.5    Thomas, D.L.6
  • 27
    • 0030711744 scopus 로고    scopus 로고
    • Cloning and characterization of a complete open reading frame of the hepatitis C virus genome in only two cDNA fragments
    • Rispeter, K., M. Lu, S. Lechner, A. Zibert, and M. Roggendorf. 1997. Cloning and characterization of a complete open reading frame of the hepatitis C virus genome in only two cDNA fragments. J. Gen. Virol. 78:2751-2759.
    • (1997) J. Gen. Virol. , vol.78 , pp. 2751-2759
    • Rispeter, K.1    Lu, M.2    Lechner, S.3    Zibert, A.4    Roggendorf, M.5
  • 28
    • 0037183188 scopus 로고    scopus 로고
    • A longitudinal analysis of T-cell epitope-coding regions of hepatitis C virus after liver transplantation
    • Rosen, H. R., G. Marousek, and S. Chou. 2002. A longitudinal analysis of T-cell epitope-coding regions of hepatitis C virus after liver transplantation. Transplantation. 74:209-216.
    • (2002) Transplantation , vol.74 , pp. 209-216
    • Rosen, H.R.1    Marousek, G.2    Chou, S.3
  • 29
    • 0030878535 scopus 로고    scopus 로고
    • Virus 'quasispecies': Making a mountain out of a molehill?
    • Smith, D. B., J. McAllister, C. Casino, and P. Simmonds. 1997. Virus 'quasispecies': Making a mountain out of a molehill? J. Gen. Virol. 78:1511-1519.
    • (1997) J. Gen. Virol. , vol.78 , pp. 1511-1519
    • Smith, D.B.1    McAllister, J.2    Casino, C.3    Simmonds, P.4
  • 30
    • 0030846785 scopus 로고    scopus 로고
    • Characteristics of nucleotide substitution in the hepatitis C virus genome: Constraints on sequence change in coding regions at both ends of the genome
    • Smith, D. B., and P. Simmonds. 1997. Characteristics of nucleotide substitution in the hepatitis C virus genome: constraints on sequence change in coding regions at both ends of the genome. J. Mol. Evol. 45:238-246.
    • (1997) J. Mol. Evol. , vol.45 , pp. 238-246
    • Smith, D.B.1    Simmonds, P.2
  • 31
    • 0036305811 scopus 로고    scopus 로고
    • Quasispecies heterogeneity and constraints on the evolution of the 5′ noncoding region of hepatitis C virus (HCV): Relationship with HCV resistance to interferon-alpha therapy
    • Soler, M., M. Pellerin, C. E. Malnou, D. Dhumeaux, K. M. Kean, and J. M. Pawlotsky. 2002. Quasispecies heterogeneity and constraints on the evolution of the 5′ noncoding region of hepatitis C virus (HCV): relationship with HCV resistance to interferon-alpha therapy. Virology 298:160-173.
    • (2002) Virology , vol.298 , pp. 160-173
    • Soler, M.1    Pellerin, M.2    Malnou, C.E.3    Dhumeaux, D.4    Kean, K.M.5    Pawlotsky, J.M.6
  • 32
    • 0037083546 scopus 로고    scopus 로고
    • A highly efficient method for long-chain cDNA synthesis using trehalose and betaine
    • Spiess, A. N., and R. Ivell. 2002. A highly efficient method for long-chain cDNA synthesis using trehalose and betaine. Anal. Biochem. 301:168-174.
    • (2002) Anal. Biochem. , vol.301 , pp. 168-174
    • Spiess, A.N.1    Ivell, R.2
  • 33
    • 0037042259 scopus 로고    scopus 로고
    • Needlestick transmission of hepatitis C
    • Sulkowski, M. S., S. C. Ray, and D. L. Thomas. 2002. Needlestick transmission of hepatitis C. JAMA 287:2406-2413.
    • (2002) JAMA , vol.287 , pp. 2406-2413
    • Sulkowski, M.S.1    Ray, S.C.2    Thomas, D.L.3
  • 34
    • 0028998145 scopus 로고
    • Clinical outcomes after transfusion-associated hepatitis C
    • Tong, M. J., N. S. El-Farra, A. R. Reikes, and R. L. Co. 1995. Clinical outcomes after transfusion-associated hepatitis C. N. Engl. J. Med. 332:1463-1466.
    • (1995) N. Engl. J. Med. , vol.332 , pp. 1463-1466
    • Tong, M.J.1    El-Farra, N.S.2    Reikes, A.R.3    Co, R.L.4
  • 35
    • 0031689747 scopus 로고    scopus 로고
    • Assessment of hepatitis C virus sequence complexity by electrophoretic mobilities of both single- and double-stranded DNAs
    • Wang, Y. M., S. C. Ray, O. Laeyendecker, J. R. Ticehurst, and D. L. Thomas. 1998. Assessment of hepatitis C virus sequence complexity by electrophoretic mobilities of both single- and double-stranded DNAs. J. Clin. Microbiol. 36:2982-2989.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 2982-2989
    • Wang, Y.M.1    Ray, S.C.2    Laeyendecker, O.3    Ticehurst, J.R.4    Thomas, D.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.