Proteomic analysis of Haloferax volcanii reveals salinity-mediated regulation of the stress response protein PspA

Microbiology

Volumn 154, Issue 5, 2008, Pages 1436-1443

  Bidle, Kelly A ^a   Kirkland, P Aaron ^b   Nannen, Jennifer L ^a   Maupin Furlow, Julie A ^b  

^a RIDER UNIVERSITY   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; BACTERIAL RNA; PHAGE SHOCK PROTEIN A; SODIUM CHLORIDE; TRYPSIN; ARCHAEAL PROTEIN; HEAT SHOCK PROTEIN; PHAGE SHOCK PROTEIN, BACTERIA; PROTEOME;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENOME; CONTROLLED STUDY; GENETIC TRANSCRIPTION; HALOFERAX VOLCANII; INTERMETHOD COMPARISON; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN METABOLISM; PROTEIN TRANSPORT; PROTEOMICS; REGULON; RNA TRANSLATION; SALINITY; SALT STRESS; SALT TOLERANCE; SCORING SYSTEM; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS; UPREGULATION; BIOSYNTHESIS; CHEMISTRY; COMPARATIVE STUDY; GENE EXPRESSION REGULATION; METABOLISM; OSMOTIC PRESSURE; PHYSIOLOGY;

ARCHAEA; CYANOBACTERIA; EMBRYOPHYTA; HALOFERAX VOLCANII; NEGIBACTERIA;

ARCHAEAL PROTEINS; BACTERIAL PROTEINS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION REGULATION, ARCHAEAL; HALOFERAX VOLCANII; HEAT-SHOCK PROTEINS; OSMOTIC PRESSURE; PROTEOME; SALINITY; SODIUM CHLORIDE; TANDEM MASS SPECTROMETRY;

EID: 46249106362     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2007/015586-0     Document Type: Article

References (43)

1. Baumann, P., Qureshi, S. A. & Jackson, S. P. (1995). Transcription: new insights from studies on Archaea. Trends Genet 11, 279-283.
2. Bell, S. D. & Jackson, S. (1998). Transcription and translation in archaea: a mosaic of eukaryal and bacterial features. Trends Microbiol 6, 222-228.
3. Bergler, H., Abraham, H., Aschauer, H. & Turnowsky, F. (1994). Inhibition of lipid biosynthesis induces the expression of the pspA gene. Microbiology 140, 1937-1944.
4. Besche, H. & Zwickl, P. (2004). The Thermoplasma acidophilum Lon protease has a Ser-Lys dyad active site. Eur J Biochem 271, 4361-4365.
5. + residues in the archaeal Lon protease from Thermoplasma acidophilum. FEBS Lett 574, 161-166.
6. Bidle, K. A. (2003). Differential expression of genes influenced by changing salinity using RNA arbitrarily primed PCR in the archaeal halophile, Haloferax volcanii. Extremophiles 7, 1-7.
7. Bidle, K. A., Hanson, T. E., Howell, K. & Nannen, J. (2007). HMG-CoA reductase is regulated by salinity at the level of transcription in Haloferax volcanii. Extremophiles 11, 49-55.
8. Brissette, J. L., Russel, M., Weiner, L. & Model, P. (1990). Phage shock protein, a stress protein of Escherichia coli. Proc, Natl Acad Sci U S A 87, 862-866.
9. Brissette, J. L., Weiner, L., Ripmaster, T. L. & Model, P. (1991). Characterisation and sequence of the Escherichia coli stress-induced psp operop. J Mol Biol 220, 35-48.
10. Daniels, C. J., McKee, A. H. Z & Doolittle, W. F. (1984). Archaebacterial heat-shock proteins. EMBO J 3, 745-749.
11. Darwin, A. J. (2005). The phage-shock-protein response. Mol Microbiol 57, 621-628.
12. DeLisa, M. P., Lee, P., Palmer, T. & Georgiou, G. (2004). Phage shock protein PspA of Escherichia coli relieves saturation of protein export via the Tat pathway. J Bacteriol 186, 366-373.
13. Dennis, P. P. & Shimmin, L. C. (1997). Evolutionary divergence and salinity-mediated selection in halophilic Archaea. Microbiol Mol Biol Rev 61, 90-104.
14. Ferrer, C., Mojica, F. J. M., Juez, G. & Rodriguez-Valera, F. (1996). Differentially transcribed regions of Haloferax volcanii genome depending on the medium salinity. J Bacteriol 178, 309-313.
15. Gasteiger, E., Jung, E. & Balroch, A. (2001). SWISS-PROT: connecting biomolecular knowledge via a protein database. Curr Issues Mol Biol 3, 47-55.
16. Grant W. D., Gemmell, R. T. & McGenity, T. J. (1998). Halophiles. In Extremophiles: Microbial Life in Extreme Environments, pp. 93-132. Edited by K. Horikoshi & W. D. Grant. New York: Wiley and Sons Inc.
17. Hankamer, B. D., Elderkin, & L., Buck M. & Nield, J. (2004). Organization of the AAA(+) adaptor protein PspA is an oligomeric ring. J Biol Chem 279, 8862-8866.
18. Izotove, L. S., Strongin, A. Y., Sterkin, V. E., Ostoslavaskaya, V. I., Lyublinskaya, L. A., Timokhina, E. A. & Stepanov, V. M. (1983). Purification and properties of serine protease from Halobacterium halobium. J Bacteriol 155, 826-830.
19. Javor, B. (1989). Hypersaline Environments: Microbiology and Biogeochemistry. Berlin: Springer Verlag.
20. Jovanovic, G., Weiner, L. & Model, P. (1996). Identification, nucleotide sequence, and characterization of PspF, the transcriptional activator of the Escherichia coli stress-induced psp operon. J Bacteriol 178, 1936-1945.
21. Kirkland, P. A., Busby, J., Stevens, S. & Maupin-Furlow, J. A. (2006). Trizol-based method for sample preparation and isoelectric focusing of halophilic proteins. Anal Biochem 351, 254-259.
22. Kirkland, P. A., Reuter, C. J. & Maupin-Furlow, J. A. (2007). Effect of proteasome inhibitor clasto-lactacystin-β-lactone on the proteome of the haloarchaeon Haloferax volcanii. Microbiology 153, 2271-2280.
23. Kleerebezem, M. & Tommassen, J. (1993). Expression of the pspA gene stimulates efficient protein export in Escherichia coli. Mol Microbiol 7, 947-956.
24. Kleerebezem, M., Crielaard, W. & Tommassen, J. (1996). Involvement of the stress protein PspA (phage shock protein A) of Escherichia coli in maintenance of the proton motive force under stress conditions. EMBO J 15, 162-171.
25. Kyrpides, N. C. & Ouzounis, C. A. (1999). Transcription in Archaea. Proc Natl Acad Sci U S A 96, 8545-8550.
26. Langer, D., Hain, J., Thuriaux, P. & Zillig, W. (1995). Transcription in Archaea: similarity to that in Eucarya. Proc Natl Acad Sci U S A 92, 5768-5772.
27. ΔΔCT. method. Methods 25, 402-408.
28. Madern, D., Ebel, C. & Zaccai, G. (2000). Halophilic adaptation of enzymes. Extremophiles 4, 91-98.
29. Mojica, F. J. M., Cisneros, E., Ferrer, C., Rodriguez-Valera, F. & Juez, G. (1997). Osmotically induced response in representatives of halophilic prokaryotes: the bacterium Halomonas elongata and the archeon Haloferax volcanii. J Bacteriol 179, 5471-5481.
30. Mullakhanbhai, M. F. & Larsen, H. (1975). Halobacterium volcanii spec. nov., a Dead Sea halobacterium with a moderate salt requirement. Arch Microbiol 104, 207-214.
31. Oren, A. (1998). Microbiology and Biogeochemistry of Hypersaline Environments. CRC Press.
32. Oren, A. (1999). Bioenergetic aspects of halophilism. Microbiol Mol Biol Rev 63, 334-348.
33. Perrière, G. & Gouy, M. (1996). WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364-369.
34. Robb, F. T., Place, A. R., Sowers, K. R., Schreier, H. J., DasSarma, S. & Fleischmann, E. M. (1995). Archaea: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
35. Robinson, J. L., Pyzyna, B., Atrasz, R. G. & other authors (2005). Growth kinetics of extremely halophilic Archaea (family Halobacteriaceae) as revealed by Arrhenius plots. J Bacteriol 187, 923-925.
36. Rowley, G., Spector, M., Kormanec, J. & Roberts, M. (2006). Pushing the envelope: extracytoplasmic stress responses in bacterial pathogens. Nat Rev Microbiol 4, 383-394.
37. Soppa, J. (1999). Transcription initiation in Archaea: facts, factors, and future aspects. Mol Microbiol 31, 1295-1305.
38. Thomm, M. (1996). Archaeal transcription factors and their role in transcription initiation. FEMS Microbiol Rev 18, 159-171.
39. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X window interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
40. Weiner, L. & Model, P. (1994). Role of an Escherichia coli stress-response operon in stationary-pbase survival. Proc Natl Acad Sci U S A 91, 2191-2195.
41. Weiner, L., Brissette, J. L. & Model, P. (1991). Stress-induced expression of the Escherichia coli phage shock protein operon is dependent on sigma 54 and modulated by positive and negative feedback mechanisms. Genes Dev 5, 1912-1923.
42. Wendoloski, D., Ferrer, C. & Dyall-Smith, M. L. (2001). A new simvastatin (mevinolin)-resistance marker from Haloarcula hispanica and a new Haloferax volcanii strain cured of plasmid pHV2. Microbiology 147, 959-964.
43. Westphal, S., Heins, L., Soll, J. & Vothknecht, U. C. (2001). Vipp1 deletion mutant of Synechocystis: a connection between bacterial phage shock and thylakoid biogenesis? Proc Natl Acad Sci U S A 98, 4243-4248.