Molecular basis for the selectivity and specificity of ligand recognition by the family 16 carbohydrate-binding modules from Thermoanaerobacterium polysaccharolyticum ManA

Journal of Biological Chemistry

Volumn 283, Issue 18, 2008, Pages 12415-12425

  Bae, Brian ^a   Ohene Adjei, Samuel ^a   Kocherginskaya, Svetlana ^a   Mackie, Roderick I ^a   Spies, M Ashley ^a   Cann, Isaac K O ^a   Nair, Satish K ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULES; BIOPOLYMERS; CARBOHYDRATES; CATALYSTS; ENZYMES; ORGANIC COMPOUNDS; POLYSACCHARIDES; PROTEINS; SUGAR (SUCROSE); SUGARS;

BINARY COMPLEXES; BINDING DOMAINS; BINDING MODULES; CALORIMETRIC ANALYSES; CATALYTIC COMPONENTS; CATALYTIC DOMAINS; HIGH AFFINITIES; HIGH RESOLUTION CRYSTAL STRUCTURES; HIGH SPECIFICITIES; LIGAND RECOGNITIONS; MANNANASE; MOLECULAR BASES; MOLECULAR INSIGHTS; MULTIDISCIPLINARY APPROACHES;

LIGANDS;

BETA MANNOSIDASE; BINDING PROTEIN; CARBOHYDRATE BINDING MODULE; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; LIGAND;

ARTICLE; BACTERIAL GENE; CALORIMETRY; CONTROLLED STUDY; MANA GENE; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PURIFICATION; THERMOANAEROBACTERIUM; THERMOANAEROBACTERIUM POLYSACCHAROLYTICUM; AMINO ACID SEQUENCE; BIOLOGY; CARBOHYDRATE METABOLISM; CHEMICAL STRUCTURE; CHEMISTRY; ELECTRICITY; ENZYME SPECIFICITY; ENZYMOLOGY; MOLECULAR GENETICS; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; THERMODYNAMICS; X RAY CRYSTALLOGRAPHY;

THERMOANAEROBACTERIUM POLYSACCHAROLYTICUM;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CALORIMETRY; CARBOHYDRATE METABOLISM; COMPUTATIONAL BIOLOGY; CRYSTALLOGRAPHY, X-RAY; ELECTROSTATICS; LIGANDS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SUBSTRATE SPECIFICITY; THERMOANAEROBACTERIUM; THERMODYNAMICS;

EID: 45549100794     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M706513200     Document Type: Article

References (36)

1. Coughlan, M. P. (1985) Biochem. Soc. Trans. 13, 405-406
2. Ahsan, M. M., Kimura, T., Karita, S., Sakka, K., and Ohmiya, K. (1996) J. Bacteriol. 178, 5732-5740
3. Bolam, D. N., Xie, H., White, P., Simpson, P. J., Hancock, S. M., Williamson, M. P., and Gilbert, H. J. (2001) Biochemistry 40, 2468-2477
4. Boraston, A. B., Bolam, D. N., Gilbert, H. J., and Davies, G. J. (2004) Biochem. J. 382, 769-781
5. Linder, M., Salovuori, I., Ruohonen, L., and Teeri, T. T. (1996) J. Biol. Chem. 271, 21268-21272
6. Boraston, A. B., Kwan, E., Chiu, P., Warren, R. A., and Kilburn, D. G. (2003) J. Biol. Chem. 278, 6120-6127
7. Sunna, A., Gibbs, M. D., and Bergquist, P. L. (2001) Biochem. J. 356, 791-798
8. Ito, Y., Tomita, T., Roy, N., Nakano, A., Sugawara-Tomita, N., Watanabe, S., Okai, N., Abe, N., and Kamio, Y. (2003) Appl. Environ. Microbiol. 69, 6969-6978
9. Bolam, D. N., Ciruela, A., McQueen-Mason, S., Simpson, P., Williamson, M. P., Rixon, J. E., Boraston, A., Hazlewood, G. P., and Gilbert, H. J. (1998) Biochem. J. 331, 775-781
10. Walden, H., Taylor, G. L., Lorentzen, E., Pohl, E., Lilie, H., Schramm, A., Knura, T., Stubbe, K., Tjaden, B., and Hensel, R. (2004) J. Mol. Biol. 342, 861-875
11. Black, G. W., Rixon, J. E., Clarke, J. H., Hazlewood, G. P., Theodorou, M. K., Morris, P., and Gilbert, H. J. (1996) Biochem. J. 319, 515-520
12. Din, N., Forsythe, I. J., Burtnick, L. D., Gilkes, N. R., Miller, R. C., Jr., Warren, R. A., and Kilburn, D. G. (1994) Mol. Microbiol. 11, 747-755
13. Southall, S. M., Simpson, P. J., Gilbert, H. J., Williamson, G., and Williamson, M. P. (1999) FEBS Lett. 447, 58-60
14. Cann, I. K., Kocherginskaya, S., King, M. R., White, B. A., and Mackie, R. I. (1999) J. Bacteriol. 181, 1643-1651
15. Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L., and Clardy, J. (1993) J. Mol. Biol. 229, 105-124
16. Tomme, P., Creagh, A. L., Kilburn, D. G., and Haynes, C. A. (1991) Biochemistry 35, 13885-13894
17. Otwinowski, Z., Borek, D., Majewski, W., and Minor, W. (2003) Acta Crystallogr. Sect. A 59, 228-234
18. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
19. Terwilliger, T. C. (2003) Methods Enzymol. 374, 22-37
20. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 849-861
21. Terwilliger, T. C. (2002) Acta Crystallogr. Sect. D Biol. Crystallogr. 58, 1937-1940
22. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
23. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
24. Vagin, A., and Teplyakov, A. (2000) Acta Crystallogr. Sect. D Biol. Crystallogr. 56, 1622-1624
25. Perrakis, A., Harkiolaki, M., Wilson, K. S., and Lamzin, V. S. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 1445-1450
26. Brunger, A. T. (1993) Acta Crystallogr. Sect. D Biol. Crystallogr. 49, 24 -36
27. Kleywegt, G. J., and Brunger, A. T. (1996) Structure (Lond.) 4, 897-904
28. Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486
29. Boraston, A. B., Nurizzo, D., Notenboom, V., Ducros, V., Rose, D. R., Kilburn, D. G., and Davies, G. J. (2002) J. Mol. Biol. 319, 1143-1156
30. Charnock, S. J., Bolam, D. N., Turkenburg, J. P., Gilbert, H. J., Ferreira, L. M., Davies, G. J., and Fontes, C. M. (2000) Biochemistry 39, 5013-5021
31. Mizushima, T., Hiaro, T., Yoshida, Y., Lee, S. J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., and Tanaka, K. (2004) Nat. Struct. Mol. Biol. 11, 365-370
32. Young, S. H., Dong, W. J., and Jacobs, R. R. (2000) J. Biol. Chem. 275, 11874-11879
33. Saito, H., Yoshioka, Y., Uehara, N., Aketagawa, J., Tanaka, S., and Shibata, Y. (1991) Carbohydr. Res. 217, 181-190
34. Freelove, A. C. J., Bolam, D. N., White, P., Hazlewood, G. P., and Gilbert, H. J. (2001) J. Biol. Chem. 276, 43010-43017
35. Charnock, S. J., Bolam, D. N., Nurizzo, D., Szabo, L., McKie, V. A., Gilbert, H. J., and Davies, G. J. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 14077-14082
36. Flint, J., Bolam, D. N., Nurizzo, D., Taylor, E. J., Williamson, M. P., Walters, C., Davies, G. J., and Gilbert, H. J. (2005) J. Biol. Chem. 280, 23718 -23726