-
1
-
-
33747055643
-
Epigenetic regulation of MHC-II and CIITA genes
-
Wright, K.L. & Ting, J.P. Epigenetic regulation of MHC-II and CIITA genes. Trends Immunol. 27, 405-412 (2006).
-
(2006)
Trends Immunol
, vol.27
, pp. 405-412
-
-
Wright, K.L.1
Ting, J.P.2
-
2
-
-
20944445879
-
MHC2TA is associated with differential MHC molecule expression and susceptibility to rheumatoid arthritis, multiple sclerosis and myocardial infarction
-
Swanberg, M. et al. MHC2TA is associated with differential MHC molecule expression and susceptibility to rheumatoid arthritis, multiple sclerosis and myocardial infarction. Nat. Genet. 37, 486-494 (2005).
-
(2005)
Nat. Genet
, vol.37
, pp. 486-494
-
-
Swanberg, M.1
-
3
-
-
33750507719
-
Epigenetic silencing of MHC2TA transcription in cancer
-
Holling, T.M., van Eggermond, M.C., Jager, M.J. & van den Elsen, P.J. Epigenetic silencing of MHC2TA transcription in cancer. Biochem. Pharmacol. 72, 1570-1576 (2006).
-
(2006)
Biochem. Pharmacol
, vol.72
, pp. 1570-1576
-
-
Holling, T.M.1
van Eggermond, M.C.2
Jager, M.J.3
van den Elsen, P.J.4
-
4
-
-
33750321707
-
Interferons, immunity and cancer immunoediting
-
Dunn, G.P., Koebel, C.M. & Schreiber, R.D. Interferons, immunity and cancer immunoediting. Nat. Rev. Immunol. 6, 836-848 (2006).
-
(2006)
Nat. Rev. Immunol
, vol.6
, pp. 836-848
-
-
Dunn, G.P.1
Koebel, C.M.2
Schreiber, R.D.3
-
5
-
-
34248589338
-
Interferon: Cellular executioner or white knight?
-
Maher, S.G., Romero-Weaver, A.L., Scarzello, A.J. & Gamero, A.M. Interferon: Cellular executioner or white knight? Curr. Med. Chem. 14, 1279-1289 (2007).
-
(2007)
Curr. Med. Chem
, vol.14
, pp. 1279-1289
-
-
Maher, S.G.1
Romero-Weaver, A.L.2
Scarzello, A.J.3
Gamero, A.M.4
-
6
-
-
33847016148
-
Therapy-induced tumor immunosurveillance involves IFN-producing killer dendritic cells
-
Ullrich, E. et al. Therapy-induced tumor immunosurveillance involves IFN-producing killer dendritic cells. Cancer Res. 67 851-853 (2007).
-
(2007)
Cancer Res
, vol.67
, pp. 851-853
-
-
Ullrich, E.1
-
7
-
-
0032006255
-
Activation of the MHC class II transactivator CIITA by interferon-γ requires cooperative interaction between Stat1 and USF-1
-
Muhlethaler-Mottet, A., Di Berardino, W., Otten, L.A. & Mach, B. Activation of the MHC class II transactivator CIITA by interferon-γ requires cooperative interaction between Stat1 and USF-1. Immunity 8, 157-166 (1998).
-
(1998)
Immunity
, vol.8
, pp. 157-166
-
-
Muhlethaler-Mottet, A.1
Di Berardino, W.2
Otten, L.A.3
Mach, B.4
-
8
-
-
0036274018
-
Kinetics of a gamma interferon response: Expression and assembly of CIITA promoter IV and inhibition by methylation
-
Morris, A.C., Beresford, G.W., Mooney, M.R. & Boss, J.M. Kinetics of a gamma interferon response: Expression and assembly of CIITA promoter IV and inhibition by methylation. Mol. Cell. Biol. 22, 4781-4791 (2002).
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 4781-4791
-
-
Morris, A.C.1
Beresford, G.W.2
Mooney, M.R.3
Boss, J.M.4
-
9
-
-
26844579129
-
Apical role for BRG1 in cytokine-induced promoter assembly
-
Ni, Z. et al. Apical role for BRG1 in cytokine-induced promoter assembly. Proc. Natl. Acad. Sci. USA 102, 14611-14616 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 14611-14616
-
-
Ni, Z.1
-
10
-
-
0030949011
-
Expression of MHC class II molecules in different cellular and functional compartments is controlled by differential usage of multiple promoters of the transactivator CIITA
-
Muhlethaler-Mottet, A., Otten, L.A., Steimle, V. & Mach, B. Expression of MHC class II molecules in different cellular and functional compartments is controlled by differential usage of multiple promoters of the transactivator CIITA. EMBO J. 16, 2851-2860 (1997).
-
(1997)
EMBO J
, vol.16
, pp. 2851-2860
-
-
Muhlethaler-Mottet, A.1
Otten, L.A.2
Steimle, V.3
Mach, B.4
-
11
-
-
37849189202
-
Constitutive and IFNγ-induced activation of MHC2TA promoter type III in human melanoma cell lines is governed by separate regulatory elements within the PIII upstream regulatory region
-
van der Stoep, N. et al. Constitutive and IFNγ-induced activation of MHC2TA promoter type III in human melanoma cell lines is governed by separate regulatory elements within the PIII upstream regulatory region. Mol. Immunol. 44, 2036-2049 (2007).
-
(2007)
Mol. Immunol
, vol.44
, pp. 2036-2049
-
-
van der Stoep, N.1
-
12
-
-
0032908350
-
Two distinct gamma interferon-inducible promoters of the major histocompatibility complex class II transactivator gene are differentially regulated by STAT1, interferon regulatory factor 1, and transforming growth factor beta
-
Piskurich, J.F., Linhoff, M.W., Wang, Y. & Ting, J.P. Two distinct gamma interferon-inducible promoters of the major histocompatibility complex class II transactivator gene are differentially regulated by STAT1, interferon regulatory factor 1, and transforming growth factor beta. Mol. Cell. Biol. 19, 431-440 (1999).
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 431-440
-
-
Piskurich, J.F.1
Linhoff, M.W.2
Wang, Y.3
Ting, J.P.4
-
13
-
-
10244236502
-
A BAF-centred view of the immune system
-
Chi, T. A BAF-centred view of the immune system. Nat. Rev. Immunol. 4, 965-977 (2004).
-
(2004)
Nat. Rev. Immunol
, vol.4
, pp. 965-977
-
-
Chi, T.1
-
14
-
-
0037291915
-
Transcriptional specificity of human SWI/SNF BRG1 and BRM chromatin remodeling complexes
-
Kadam, S. & Emerson, B.M. Transcriptional specificity of human SWI/SNF BRG1 and BRM chromatin remodeling complexes. Mol. Cell 11, 377-389 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 377-389
-
-
Kadam, S.1
Emerson, B.M.2
-
15
-
-
0035962635
-
When the SWI/SNF complex remodels...the cell cycle
-
Muchardt, C. & Yaniv, M. When the SWI/SNF complex remodels...the cell cycle. Oncogene 20, 3067-3075 (2001).
-
(2001)
Oncogene
, vol.20
, pp. 3067-3075
-
-
Muchardt, C.1
Yaniv, M.2
-
16
-
-
33847131992
-
Nuclear receptors and chromatin remodeling machinery
-
Trotter, K.W. & Archer, T.K. Nuclear receptors and chromatin remodeling machinery. Mol. Cell. Endocrinol. 265-266, 162-167 (2007).
-
(2007)
Mol. Cell. Endocrinol
, vol.265-266
, pp. 162-167
-
-
Trotter, K.W.1
Archer, T.K.2
-
17
-
-
0036850346
-
Deciphering the transcriptional histone acetylation code for a human gene
-
Agalioti, T., Chen, G. & Thanos, D. Deciphering the transcriptional histone acetylation code for a human gene. Cell 111, 381-392 (2002).
-
(2002)
Cell
, vol.111
, pp. 381-392
-
-
Agalioti, T.1
Chen, G.2
Thanos, D.3
-
18
-
-
2442691703
-
Temporal recruitment of transcription factors and SWI/SNF chromatin-remodeling enzymes during adipogenic induction of the peroxisome proliferator-activated receptor γ nuclear hormone receptor
-
Salma, N., Xiao, H., Mueller, E, & Imbalzano, A.N. Temporal recruitment of transcription factors and SWI/SNF chromatin-remodeling enzymes during adipogenic induction of the peroxisome proliferator-activated receptor γ nuclear hormone receptor. Mol. Cell. Biol. 24, 4651-4663 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 4651-4663
-
-
Salma, N.1
Xiao, H.2
Mueller, E.3
Imbalzano, A.N.4
-
19
-
-
0032475845
-
-
Armstrong, J.A., Bieker, J.J. & Emerson, B.M.A. SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro. Cell 95, 93-104 (1998).
-
Armstrong, J.A., Bieker, J.J. & Emerson, B.M.A. SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro. Cell 95, 93-104 (1998).
-
-
-
-
20
-
-
0032492846
-
Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex
-
Fryer, C.J. & Archer, T.K. Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex. Nature 393, 88-91 (1998).
-
(1998)
Nature
, vol.393
, pp. 88-91
-
-
Fryer, C.J.1
Archer, T.K.2
-
21
-
-
0035838992
-
Regulation of CSF1 promoter by the SWI/SNF-like BAF complex
-
Liu, R. et al. Regulation of CSF1 promoter by the SWI/SNF-like BAF complex. Cell 106, 309-318 (2001).
-
(2001)
Cell
, vol.106
, pp. 309-318
-
-
Liu, R.1
-
22
-
-
0036723647
-
Maximal induction of a subset of interferon target genes requires the chromatin-remodeling activity of the BAF complex
-
Liu, H, Kang, H., Liu, R., Chen, X. & Zhao, K. Maximal induction of a subset of interferon target genes requires the chromatin-remodeling activity of the BAF complex. Mol. Cell. Biol. 22, 6471-6479 (2002).
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 6471-6479
-
-
Liu, H.1
Kang, H.2
Liu, R.3
Chen, X.4
Zhao, K.5
-
23
-
-
0037062922
-
Reciprocal regulation of CD4/CD8 expression by SWI/SNF-like BAF complexes
-
Chi, T.H. et al. Reciprocal regulation of CD4/CD8 expression by SWI/SNF-like BAF complexes. Nature 418, 195-199 (2002).
-
(2002)
Nature
, vol.418
, pp. 195-199
-
-
Chi, T.H.1
-
24
-
-
33750465872
-
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
-
Cai, S., Lee, C.C. & Kohwi-Shigematsu, T. SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat. Genet. 38, 1278-1288 (2006).
-
(2006)
Nat. Genet
, vol.38
, pp. 1278-1288
-
-
Cai, S.1
Lee, C.C.2
Kohwi-Shigematsu, T.3
-
25
-
-
28044437502
-
Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region
-
Im, H. et al. Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region. Proc. Natl. Acad. Sci. USA 102, 17065-17070 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 17065-17070
-
-
Im, H.1
-
26
-
-
0033582269
-
Tissue-specific and developmental stage-specific DNA binding by a mammalian SWI/SNF complex associated with human fetal-to-adult globin gene switching
-
O'Neill, D. et al. Tissue-specific and developmental stage-specific DNA binding by a mammalian SWI/SNF complex associated with human fetal-to-adult globin gene switching. Proc. Natl. Acad. Sci. USA 96, 349-354 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 349-354
-
-
O'Neill, D.1
-
27
-
-
28444439242
-
Brg1 mutation that uncouples ATPase activity from chromatin remodeling reveals an essential role for SWI/SNF-related complexes in β-globin expression and erythroid development
-
Bultman, S.J., Gebuhr, T.C. & Magnuson, T.A. Brg1 mutation that uncouples ATPase activity from chromatin remodeling reveals an essential role for SWI/SNF-related complexes in β-globin expression and erythroid development. Genes Dev. 19, 2849-2861 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 2849-2861
-
-
Bultman, S.J.1
Gebuhr, T.C.2
Magnuson, T.A.3
-
28
-
-
34250183131
-
Dissecting molecular steps in chromatin domain activation during hematopoietic differentiation
-
Kim, S.I., Bultman, S.J., Jing, H., Blobel, G.A. & Bresnick, E.H. Dissecting molecular steps in chromatin domain activation during hematopoietic differentiation. Mol. Cell. Biol. 27, 4551-4565 (2007).
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 4551-4565
-
-
Kim, S.I.1
Bultman, S.J.2
Jing, H.3
Blobel, G.A.4
Bresnick, E.H.5
-
29
-
-
0344938355
-
The SWI/SNF complex creates loop domains in DNA and polynucleosome arrays and can disrupt DNA-histone contacts within these domains
-
Bazett-Jones, D.P., Cote, J., Landel, C.C., Peterson, C.L. & Workman, J.L. The SWI/SNF complex creates loop domains in DNA and polynucleosome arrays and can disrupt DNA-histone contacts within these domains. Mol. Cell. Biol. 19, 1470-1478 (1999).
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 1470-1478
-
-
Bazett-Jones, D.P.1
Cote, J.2
Landel, C.C.3
Peterson, C.L.4
Workman, J.L.5
-
30
-
-
0037090777
-
Interferon-gamma-induced chromatin remodeling at the CIITA locus is BRG1 dependent
-
Pattenden, S.G., Klose, R., Karaskov, E. & Bremner, R. Interferon-gamma-induced chromatin remodeling at the CIITA locus is BRG1 dependent. EMBO J. 21, 1978-1986 (2002).
-
(2002)
EMBO J
, vol.21
, pp. 1978-1986
-
-
Pattenden, S.G.1
Klose, R.2
Karaskov, E.3
Bremner, R.4
-
31
-
-
0036800352
-
Chromatin-remodelling factor BRG1 selectively activates a subset of interferon-α-inducible genes
-
Huang, M. et al. Chromatin-remodelling factor BRG1 selectively activates a subset of interferon-α-inducible genes. Nat. Cell Biol. 4, 774-781 (2002).
-
(2002)
Nat. Cell Biol
, vol.4
, pp. 774-781
-
-
Huang, M.1
-
32
-
-
2942592799
-
The chromatin-remodeling BAF complex mediates cellular antiviral activities by promoter priming
-
Cui, K. et al. The chromatin-remodeling BAF complex mediates cellular antiviral activities by promoter priming. Mol. Cell. Biol. 24, 4476-4486 (2004).
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 4476-4486
-
-
Cui, K.1
-
33
-
-
23044461703
-
PBAF chromatin-remodeling complex requires a novel specificity subunit, BAF200, to regulate expression of selective interferon-responsive genes
-
Yan, Z. et al. PBAF chromatin-remodeling complex requires a novel specificity subunit, BAF200, to regulate expression of selective interferon-responsive genes. Genes Dev. 19, 1662-1667 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 1662-1667
-
-
Yan, Z.1
-
34
-
-
33845936850
-
Brahma-related gene 1-dependent STAT3 recruitment at IL-6-inducible genes
-
Ni, Z. & Bremner, R. Brahma-related gene 1-dependent STAT3 recruitment at IL-6-inducible genes. J. Immunol. 178, 345-351 (2007).
-
(2007)
J. Immunol
, vol.178
, pp. 345-351
-
-
Ni, Z.1
Bremner, R.2
-
35
-
-
19944430797
-
Genomic maps and comparative analysis of histone modificattions in human and mouse
-
Bernstein, B.E. et al. Genomic maps and comparative analysis of histone modificattions in human and mouse. Cell 120, 169-181 (2005).
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
-
36
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman, N.D. et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39, 311-318 (2007).
-
(2007)
Nat. Genet
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
-
37
-
-
33847032960
-
The mammalian epigenome
-
Bernstein, B.E., Messner, A. & Lander, E.S. The mammalian epigenome. Cell 128, 669-681 (2007).
-
(2007)
Cell
, vol.128
, pp. 669-681
-
-
Bernstein, B.E.1
Messner, A.2
Lander, E.S.3
-
38
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker, J., Rippe, K., Dekker, M. & Kleckner, N. Capturing chromosome conformation. Science 295, 1306-1311 (2002).
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
39
-
-
33745619776
-
Maternal BRG1 regulates zygotic genome activation in the mouse
-
Bultman, S.J. et al. Maternal BRG1 regulates zygotic genome activation in the mouse. Genes Dev. 20, 1744-1754 (2006).
-
(2006)
Genes Dev
, vol.20
, pp. 1744-1754
-
-
Bultman, S.J.1
-
40
-
-
18744410349
-
ALL-1 is a histone methyltransferase that assembles a super-complex of proteins involved in transcriptional regulation
-
Nakamura, T. et al. ALL-1 is a histone methyltransferase that assembles a super-complex of proteins involved in transcriptional regulation. Mol. Cell 10, 1119-1128 (2002).
-
(2002)
Mol. Cell
, vol.10
, pp. 1119-1128
-
-
Nakamura, T.1
-
41
-
-
0033780721
-
Mitotic stability of an episomal vector containing a human scaffold/matrix-attached region is provided by association with nuclear matrix
-
Baiker, A. et al. Mitotic stability of an episomal vector containing a human scaffold/matrix-attached region is provided by association with nuclear matrix. Nat. Cell Biol. 2, 182-184 (2000).
-
(2000)
Nat. Cell Biol
, vol.2
, pp. 182-184
-
-
Baiker, A.1
-
42
-
-
26644453335
-
Simple and highly efficient BAC recombineering using galK selection
-
Warming, S., Costantino, N., Court, D.L., Jenkins, N.A. & Copeland, N.G. Simple and highly efficient BAC recombineering using galK selection. Nucleic Acids Res. 33, e36 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Warming, S.1
Costantino, N.2
Court, D.L.3
Jenkins, N.A.4
Copeland, N.G.5
-
43
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski, A. et al. High-resolution profiling of histone methylations in the human genome. Cell 129, 823-837 (2007).
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
-
44
-
-
33646872978
-
Chromatin signatures of pluripotent cell lines
-
Azuara, V. et al. Chromatin signatures of pluripotent cell lines. Nat. Cell Biol. 8, 532-538 (2006).
-
(2006)
Nat. Cell Biol
, vol.8
, pp. 532-538
-
-
Azuara, V.1
-
45
-
-
29144475515
-
Global changes in STAT target selection and transcription regulation upon interferon treatments
-
Hartman, S.E. et al. Global changes in STAT target selection and transcription regulation upon interferon treatments. Genes Dev. 19, 2953-2968 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 2953-2968
-
-
Hartman, S.E.1
-
46
-
-
34250370060
-
Mapping the chromosomal targets of STAT1 by sequence tag analysis of genomic enrichment (STAGE)
-
Bhinge, A.A., Kim, J., Euskirchen, G.M., Snyder, M. & Iyer, V.R. Mapping the chromosomal targets of STAT1 by sequence tag analysis of genomic enrichment (STAGE). Genome Res. 17, 910-916 (2007).
-
(2007)
Genome Res
, vol.17
, pp. 910-916
-
-
Bhinge, A.A.1
Kim, J.2
Euskirchen, G.M.3
Snyder, M.4
Iyer, V.R.5
-
47
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson, G. et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat. Methods 4, 651-657 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 651-657
-
-
Robertson, G.1
-
48
-
-
35548965486
-
P-STAT1 mediates higher-order chromatin remodelling of the human MHC in response to IFNy
-
Christova, R. et al. P-STAT1 mediates higher-order chromatin remodelling of the human MHC in response to IFNy. J. Cell. Sci. 120, 3262-3270 (2007).
-
(2007)
J. Cell. Sci
, vol.120
, pp. 3262-3270
-
-
Christova, R.1
-
49
-
-
33645459867
-
Aldosterone-sensitive repression of ENaCα transcription by a histone H3 lysine-79 methyltransferase
-
Zhang, W. et al. Aldosterone-sensitive repression of ENaCα transcription by a histone H3 lysine-79 methyltransferase. Am. J. Physiol. Cell Physiol. 290, C936-C946 (2006).
-
(2006)
Am. J. Physiol. Cell Physiol
, vol.290
-
-
Zhang, W.1
-
50
-
-
42149146774
-
DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells
-
Steger, D.J. et al. DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells. Mol Cell Biol (2008).
-
(2008)
Mol Cell Biol
-
-
Steger, D.J.1
-
51
-
-
0026580006
-
brahma: A regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SW12
-
Tamkun, J.W. et al. brahma: A regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SW12. Cell 68, 561-572 (1992).
-
(1992)
Cell
, vol.68
, pp. 561-572
-
-
Tamkun, J.W.1
-
53
-
-
0037351881
-
Cyclic, proteasome-mediated turnover of unliganded and liganded ERα on responsive promoters is an integral feature of estrogen signaling
-
Reid, G. et al. Cyclic, proteasome-mediated turnover of unliganded and liganded ERα on responsive promoters is an integral feature of estrogen signaling. Mol. Cell 11, 695-707 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 695-707
-
-
Reid, G.1
|