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Volumn 19, Issue 24, 2005, Pages 2953-2968

Global changes in STAT target selection and transcription regulation upon interferon treatments

Author keywords

ChIp chip; Chromosome 22; Interferon; Microarray; STAT1; STAT2

Indexed keywords

RECOMBINANT ALPHA INTERFERON; RECOMBINANT GAMMA INTERFERON; RECOMBINANT INTERFERON; STAT PROTEIN; STAT1 PROTEIN; STAT2 PROTEIN;

EID: 29144475515     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.1371305     Document Type: Article
Times cited : (90)

References (56)
  • 1
    • 85047696678 scopus 로고    scopus 로고
    • Chromatin remodeling factor encoded by ini1 induces G1 arrest and apoptosis in ini1-deficient cells
    • Ae, K., Kobayashi, N., Sakuma, R., Ogata, T., Kuroda, H., Kawaguchi, N., Shinomiya, K., and Kitamura, Y. 2002. Chromatin remodeling factor encoded by ini1 induces G1 arrest and apoptosis in ini1-deficient cells. Oncogene 21: 3112-3120.
    • (2002) Oncogene , vol.21 , pp. 3112-3120
    • Ae, K.1    Kobayashi, N.2    Sakuma, R.3    Ogata, T.4    Kuroda, H.5    Kawaguchi, N.6    Shinomiya, K.7    Kitamura, Y.8
  • 2
    • 0037090251 scopus 로고    scopus 로고
    • Activation of the neutrophil nicotinamide adenine dinucleotide phosphate oxidase by galectin-1
    • Almkvist, J., Dahlgren, C., Leffler, H., and Karlsson, A. 2002. Activation of the neutrophil nicotinamide adenine dinucleotide phosphate oxidase by galectin-1. J. Immunol. 168: 4034-4041.
    • (2002) J. Immunol. , vol.168 , pp. 4034-4041
    • Almkvist, J.1    Dahlgren, C.2    Leffler, H.3    Karlsson, A.4
  • 3
    • 0036098381 scopus 로고    scopus 로고
    • Functional characterization of the 5 flanking region of human ubiquitin fusion degradation 1 like gene (UFD1L)
    • Amati, F., Conti, E., Botta, A., Amicucci, P., Dallapiccola, B., and Novelli, G. 2002. Functional characterization of the 5 flanking region of human ubiquitin fusion degradation 1 like gene (UFD1L). Cell Biochem. Funct. 20: 163-170.
    • (2002) Cell Biochem. Funct. , vol.20 , pp. 163-170
    • Amati, F.1    Conti, E.2    Botta, A.3    Amicucci, P.4    Dallapiccola, B.5    Novelli, G.6
  • 6
    • 0034981517 scopus 로고    scopus 로고
    • STAT proteins: Signal transducers and activators of transcription
    • Bromberg, J. and Chen, X. 2001. STAT proteins: Signal transducers and activators of transcription. Methods Enzymol. 333: 138-151.
    • (2001) Methods Enzymol. , vol.333 , pp. 138-151
    • Bromberg, J.1    Chen, X.2
  • 7
    • 0029799912 scopus 로고    scopus 로고
    • Transcriptionally active Stat1 is required for the antiproliferative effects of both interferon and interferon α
    • Bromberg, J.F., Horvath, C.M., Wen, Z., Schreiber, R.D., and Darnell Jr., J.E. 1996. Transcriptionally active Stat1 is required for the antiproliferative effects of both interferon and interferon α. Proc. Natl. Acad. Sci. 93: 7673-7678.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 7673-7678
    • Bromberg, J.F.1    Horvath, C.M.2    Wen, Z.3    Schreiber, R.D.4    Darnell Jr., J.E.5
  • 8
    • 0025245629 scopus 로고
    • Molecular basis of interferon-γ and lipopolysaccharide enhancement of phagocyte respiratory burst capability: Studies on the gene expression of several NADPH oxidase components
    • Cassatella, M.A., Bazzoni, F., Flynn, R.M., Dusi, S., Trinchieri, G., and Rossi, F. 1990. Molecular basis of interferon-γ and lipopolysaccharide enhancement of phagocyte respiratory burst capability: Studies on the gene expression of several NADPH oxidase components. J. Biol. Chem. 265: 20241-20246.
    • (1990) J. Biol. Chem. , vol.265 , pp. 20241-20246
    • Cassatella, M.A.1    Bazzoni, F.2    Flynn, R.M.3    Dusi, S.4    Trinchieri, G.5    Rossi, F.6
  • 9
    • 0035816315 scopus 로고    scopus 로고
    • High density oligonucleotide array analysis of interferon-2a sensitivity and transcriptional response in melanoma cells
    • Certa, U., Seiler, M., Padovan, E., and Spagnoli, G.C. 2001. High density oligonucleotide array analysis of interferon-2a sensitivity and transcriptional response in melanoma cells. Br. J. Cancer 85: 107-114.
    • (2001) Br. J. Cancer , vol.85 , pp. 107-114
    • Certa, U.1    Seiler, M.2    Padovan, E.3    Spagnoli, G.C.4
  • 10
    • 0032417696 scopus 로고    scopus 로고
    • Identification of genes differentially regulated by interferon α, β, or γ using oligonucleotide arrays
    • Der, S.D., Zhou, A., Williams, B.R., and Silverman, R.H. 1998. Identification of genes differentially regulated by interferon α, β, or γ using oligonucleotide arrays. Proc. Natl. Acad. Sci. 95: 15623-15628.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 15623-15628
    • Der, S.D.1    Zhou, A.2    Williams, B.R.3    Silverman, R.H.4
  • 11
    • 0030024563 scopus 로고    scopus 로고
    • Targeted disruption of the mouse Stat1 gene results in compromised innate immunity to viral disease
    • Durbin, J.E., Hackenmiller, R., Simon, M.C., and Levy, D.E. 1996. Targeted disruption of the mouse Stat1 gene results in compromised innate immunity to viral disease. Cell 84: 443-450.
    • (1996) Cell , vol.84 , pp. 443-450
    • Durbin, J.E.1    Hackenmiller, R.2    Simon, M.C.3    Levy, D.E.4
  • 14
    • 0032582562 scopus 로고    scopus 로고
    • Role of Hsp70 in regulation of stresskinase JNK: Implications in apoptosis and aging
    • Gabai, V.L., Meriin, A.B., Yaglom, J.A., Volloch, V.Z., and Sherman, M.Y. 1998. Role of Hsp70 in regulation of stresskinase JNK: Implications in apoptosis and aging. FEBS Lett. 438: 1-4.
    • (1998) FEBS Lett. , vol.438 , pp. 1-4
    • Gabai, V.L.1    Meriin, A.B.2    Yaglom, J.A.3    Volloch, V.Z.4    Sherman, M.Y.5
  • 16
    • 0026651071 scopus 로고
    • Induction of expression of genes encoding components of the respiratory burst oxidase during differentiation of human myeloid cell lines induced by tumor necrosis factor and γ-interferon
    • Gupta, J.W., Kubin, M., Hartman, L., Cassatella, M., and Trinchieri, G. 1992. Induction of expression of genes encoding components of the respiratory burst oxidase during differentiation of human myeloid cell lines induced by tumor necrosis factor and γ-interferon. Cancer Res. 52: 2530-2537.
    • (1992) Cancer Res. , vol.52 , pp. 2530-2537
    • Gupta, J.W.1    Kubin, M.2    Hartman, L.3    Cassatella, M.4    Trinchieri, G.5
  • 17
    • 0035078341 scopus 로고    scopus 로고
    • Reactive oxygen species (ROS) mediates the mitochondrial-dependent apoptosis induced by transforming growth factor (β) in fetal hepatocytes
    • Herrera, B., Alvarez, A.M., Sanchez, A., Fernandez, M., Roncero, C., Benito, M., and Fabregat, I. 2001. Reactive oxygen species (ROS) mediates the mitochondrial-dependent apoptosis induced by transforming growth factor (β) in fetal hepatocytes. FASEB J. 15: 741-751.
    • (2001) FASEB J. , vol.15 , pp. 741-751
    • Herrera, B.1    Alvarez, A.M.2    Sanchez, A.3    Fernandez, M.4    Roncero, C.5    Benito, M.6    Fabregat, I.7
  • 18
    • 0030457014 scopus 로고    scopus 로고
    • Ubiquitin-dependent protein degradation
    • Hochstrasser, M. 1996. Ubiquitin-dependent protein degradation. Annu. Rev. Genet. 30: 405-439.
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 405-439
    • Hochstrasser, M.1
  • 19
    • 0035945567 scopus 로고    scopus 로고
    • Genomic binding sites of the yeast cellcycle transcription factors SBF and MBF
    • Iyer, V.R., Horak, C.E., Scafe, C.S., Botstein, D., Snyder, M., and Brown, P.O. 2001. Genomic binding sites of the yeast cellcycle transcription factors SBF and MBF. Nature 409: 533-538.
    • (2001) Nature , vol.409 , pp. 533-538
    • Iyer, V.R.1    Horak, C.E.2    Scafe, C.S.3    Botstein, D.4    Snyder, M.5    Brown, P.O.6
  • 20
    • 0037369731 scopus 로고    scopus 로고
    • Interferon alfa regulated gene expression in patients initiating interferon treatment for chronic hepatitis C
    • Ji, X., Cheung, R., Cooper, S., Li, Q., Greenberg, H.B., and He, X.S. 2003. Interferon alfa regulated gene expression in patients initiating interferon treatment for chronic hepatitis C. Hepatology 37: 610-621.
    • (2003) Hepatology , vol.37 , pp. 610-621
    • Ji, X.1    Cheung, R.2    Cooper, S.3    Li, Q.4    Greenberg, H.B.5    He, X.S.6
  • 23
    • 18744403007 scopus 로고    scopus 로고
    • The adaptor protein p40(phox) as a positive regulator of the superoxide-producing phagocyte oxidase
    • Kuribayashi, F., Nunoi, H., Wakamatsu, K., Tsunawaki, S., Sato, K., Ito, T., and Sumimoto, H. 2002. The adaptor protein p40(phox) as a positive regulator of the superoxide-producing phagocyte oxidase. EMBO J. 21: 6312-6320.
    • (2002) EMBO J. , vol.21 , pp. 6312-6320
    • Kuribayashi, F.1    Nunoi, H.2    Wakamatsu, K.3    Tsunawaki, S.4    Sato, K.5    Ito, T.6    Sumimoto, H.7
  • 25
    • 0036731485 scopus 로고    scopus 로고
    • Stats: Transcriptional control and biological impact
    • Levy, D.E. and Darnell Jr., J.E. 2002. Stats: Transcriptional control and biological impact. Nat. Rev. Mol. Cell Biol. 3: 651-662.
    • (2002) Nat. Rev. Mol. Cell Biol. , vol.3 , pp. 651-662
    • Levy, D.E.1    Darnell Jr., J.E.2
  • 26
    • 0029923456 scopus 로고    scopus 로고
    • Formation of STAT1-STAT2 heterodimers and their role in the activation of IRF-1 gene transcription by interferon-α
    • Li, X., Leung, S., Qureshi, S., Darnell Jr., J.E., and Stark, G.R. 1996. Formation of STAT1-STAT2 heterodimers and their role in the activation of IRF-1 gene transcription by interferon-α. J. Biol. Chem. 271: 5790-5794.
    • (1996) J. Biol. Chem. , vol.271 , pp. 5790-5794
    • Li, X.1    Leung, S.2    Qureshi, S.3    Darnell Jr., J.E.4    Stark, G.R.5
  • 27
    • 0034708478 scopus 로고    scopus 로고
    • RNase-L-dependent destabilization of interferon-induced mRNAs: A role for the 2-5A system in attenuation of the interferon response
    • Li, X.L., Blackford, J.A., Judge, C.S., Liu, M., Xiao, W., Kalvakolanu, D.V., and Hassel, B.A. 2000. RNase-L-dependent destabilization of interferon-induced mRNAs: A role for the 2-5A system in attenuation of the interferon response. J. Biol. Chem. 275: 8880-8888.
    • (2000) J. Biol. Chem. , vol.275 , pp. 8880-8888
    • Li, X.L.1    Blackford, J.A.2    Judge, C.S.3    Liu, M.4    Xiao, W.5    Kalvakolanu, D.V.6    Hassel, B.A.7
  • 29
    • 23044506681 scopus 로고    scopus 로고
    • The ubiquitin-proteasome pathway and its role in cancer
    • Mani, A. and Gelmann, E.P. 2005. The ubiquitin-proteasome pathway and its role in cancer. J. Clin. Oncol. 23: 4776-4789.
    • (2005) J. Clin. Oncol. , vol.23 , pp. 4776-4789
    • Mani, A.1    Gelmann, E.P.2
  • 32
    • 0036470732 scopus 로고    scopus 로고
    • Constitutive and IFN-γ-induced nuclear import of STAT1 proceed through independent pathways
    • Meyer, T., Begitt, A., Lodige, I., van Rossum, M., and Vinkemeier, U. 2002. Constitutive and IFN-γ-induced nuclear import of STAT1 proceed through independent pathways. EMBO J. 21: 344-354.
    • (2002) EMBO J. , vol.21 , pp. 344-354
    • Meyer, T.1    Begitt, A.2    Lodige, I.3    Van Rossum, M.4    Vinkemeier, U.5
  • 35
    • 0034515268 scopus 로고    scopus 로고
    • Immune response in Stat2 knockout mice
    • Park, C., Li, S., Cha, E., and Schindler, C. 2000. Immune response in Stat2 knockout mice. Immunity 13: 795-804.
    • (2000) Immunity , vol.13 , pp. 795-804
    • Park, C.1    Li, S.2    Cha, E.3    Schindler, C.4
  • 36
    • 0029589620 scopus 로고
    • Apoptosis of T cells mediated by galectin-1
    • Perillo, N.L., Pace, K.E., Seilhamer, J.J., and Baum, L.G. 1995. Apoptosis of T cells mediated by galectin-1. Nature 378: 736-739.
    • (1995) Nature , vol.378 , pp. 736-739
    • Perillo, N.L.1    Pace, K.E.2    Seilhamer, J.J.3    Baum, L.G.4
  • 38
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush, J. 2002. Microarray data normalization and transformation. Nat. Genet. 32(Suppl): 496-501.
    • (2002) Nat. Genet. , vol.32 , Issue.SUPPL. , pp. 496-501
    • Quackenbush, J.1
  • 39
    • 0033895228 scopus 로고    scopus 로고
    • Molecular mechanisms implicated in galectin-1-induced apoptosis: Activation of the AP-1 transcription factor and downregulation of Bcl-2
    • Rabinovich, G.A., Alonso, C.R., Sotomayor, C.E., Durand, S., Bocco, J.L., and Riera, C.M. 2000. Molecular mechanisms implicated in galectin-1-induced apoptosis: Activation of the AP-1 transcription factor and downregulation of Bcl-2. Cell Death Differ. 7: 747-753.
    • (2000) Cell Death Differ. , vol.7 , pp. 747-753
    • Rabinovich, G.A.1    Alonso, C.R.2    Sotomayor, C.E.3    Durand, S.4    Bocco, J.L.5    Riera, C.M.6
  • 40
    • 0037136408 scopus 로고    scopus 로고
    • Role of galectins in inflammatory and immunomodulatory processes
    • Rabinovich, G.A., Rubinstein, N., and Toscano, M.A. 2002. Role of galectins in inflammatory and immunomodulatory processes. Biochim. Biophys. Acta 1572: 274-284.
    • (2002) Biochim. Biophys. Acta , vol.1572 , pp. 274-284
    • Rabinovich, G.A.1    Rubinstein, N.2    Toscano, M.A.3
  • 45
    • 0029959644 scopus 로고    scopus 로고
    • Subtype-selective induction of wild-type p53 and apoptosis, but not cell cycle arrest, by human somatostatin receptor 3
    • Sharma, K., Patel, Y.C., and Srikant, C.B. 1996. Subtype-selective induction of wild-type p53 and apoptosis, but not cell cycle arrest, by human somatostatin receptor 3. Mol. Endocrinol. 10: 1688-1696.
    • (1996) Mol. Endocrinol. , vol.10 , pp. 1688-1696
    • Sharma, K.1    Patel, Y.C.2    Srikant, C.B.3
  • 48
    • 8744276670 scopus 로고    scopus 로고
    • The ISG15 isopeptidase UBP43 is regulated by proteolysis via the SCFSkp2 ubiquitin ligase
    • Tokarz, S., Berset, C., La Rue, J., Friedman, K., Nakayama, K., Zhang, D.E., and Lanker, S. 2004. The ISG15 isopeptidase UBP43 is regulated by proteolysis via the SCFSkp2 ubiquitin ligase. J. Biol. Chem. 279: 46424-46430.
    • (2004) J. Biol. Chem. , vol.279 , pp. 46424-46430
    • Tokarz, S.1    Berset, C.2    La Rue, J.3    Friedman, K.4    Nakayama, K.5    Zhang, D.E.6    Lanker, S.7
  • 52
    • 0038034358 scopus 로고    scopus 로고
    • Interferon-γ induces reactive oxygen species and endoplasmic reticulum stress at the hepatic apoptosis
    • Watanabe, Y., Suzuki, O., Haruyama, T., and Akaike, T. 2003. Interferon-γ induces reactive oxygen species and endoplasmic reticulum stress at the hepatic apoptosis. J. Cell Biochem. 89: 244-253.
    • (2003) J. Cell Biochem. , vol.89 , pp. 244-253
    • Watanabe, Y.1    Suzuki, O.2    Haruyama, T.3    Akaike, T.4
  • 53
    • 0037080674 scopus 로고    scopus 로고
    • Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis
    • Weinmann, A.S., Yan, P.S., Oberley, M.J., Huang, T.H., and Farnham, P.J. 2002. Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes & Dev. 16: 235-244.
    • (2002) Genes & Dev. , vol.16 , pp. 235-244
    • Weinmann, A.S.1    Yan, P.S.2    Oberley, M.J.3    Huang, T.H.4    Farnham, P.J.5
  • 54
    • 0142085085 scopus 로고    scopus 로고
    • Distinct transcriptional activation functions of STAT1 and STAT1 on DNA and chromatin templates
    • Zakharova, N., Lymar, E.S., Yang, E., Malik, S., Zhang, J.J., Roeder, R.G., and Darnell Jr., J.E. 2003. Distinct transcriptional activation functions of STAT1 and STAT1 on DNA and chromatin templates. J. Biol. Chem. 278: 43067-43073.
    • (2003) J. Biol. Chem. , vol.278 , pp. 43067-43073
    • Zakharova, N.1    Lymar, E.S.2    Yang, E.3    Malik, S.4    Zhang, J.J.5    Roeder, R.G.6    Darnell Jr., J.E.7


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