메뉴 건너뛰기




Volumn 94, Issue 1, 2008, Pages 63-74

Genetic and phenotypic evidence for Streptomyces griseus ecovars isolated from a beach and dune sand system

Author keywords

Alkaliphilic streptomycetes; Biogeography; Multilocus sequence analysis; Site endemism

Indexed keywords

RIBOSOME RNA; RNA 16S;

EID: 45449094769     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-008-9246-y     Document Type: Article
Times cited : (44)

References (65)
  • 1
    • 53349168977 scopus 로고    scopus 로고
    • Biosystematics of alkaliphilic streptomycetes isolated from seven locations across a beach and dune sand system
    • (submitted)
    • Antony-Babu S, Goodfellow M (2008) Biosystematics of alkaliphilic streptomycetes isolated from seven locations across a beach and dune sand system. Antonie Van Leeuwenhoek (submitted)
    • Antonie Van Leeuwenhoek
    • Antony-Babu, S.1    Goodfellow, M.2
  • 3
    • 19644393308 scopus 로고    scopus 로고
    • Bioactive microbial metabolites
    • Bérdy J (2005) Bioactive microbial metabolites. J Antibiot 58:1-26
    • (2005) J Antibiot , vol.58 , pp. 1-26
    • Bérdy, J.1
  • 6
    • 0033831330 scopus 로고    scopus 로고
    • Search and discovery strategies for biotechnology: The paradigm shift
    • Bull AT, Ward AC, Goodfellow M (2000) Search and discovery strategies for biotechnology: The paradigm shift. Microbiol Mol Rev 64:573-606
    • (2000) Microbiol Mol Rev , vol.64 , pp. 573-606
    • Bull, A.T.1    Ward, A.C.2    Goodfellow, M.3
  • 8
    • 0034467820 scopus 로고    scopus 로고
    • Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
    • Cho JC, Tiedje JM (2000) Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl Environ Microbiol 66:5448-5456
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5448-5456
    • Cho, J.C.1    Tiedje, J.M.2
  • 11
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan FM (2002) What are bacterial species? Annu Rev Microbiol 56:457-487
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 13
    • 0041317111 scopus 로고    scopus 로고
    • Biogeography for bacteria
    • Fenchel T (2003) Biogeography for bacteria. Science 301:925-926
    • (2003) Science , vol.301 , pp. 925-926
    • Fenchel, T.1
  • 14
    • 0030755137 scopus 로고    scopus 로고
    • Local versus global diversity of microorganisms: Cryptic diversity of ciliated protozoa
    • Fenchel T, Esteban GF, Finlay BJ (1997) Local versus global diversity of microorganisms: Cryptic diversity of ciliated protozoa. Oikos 80:220-225
    • (1997) Oikos , vol.80 , pp. 220-225
    • Fenchel, T.1    Esteban, G.F.2    Finlay, B.J.3
  • 16
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • Findlay BJ (2002) Global dispersal of free-living microbial eukaryote species. Science 296:1061-1063
    • (2002) Science , vol.296 , pp. 1061-1063
    • Findlay, B.J.1
  • 17
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox GE, Wisotzkey JD, Jurtshuk P Jr (1992) How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Evol Microbiol 42:166-170
    • (1992) Int J Syst Evol Microbiol , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk Jr., P.3
  • 19
    • 0002771212 scopus 로고    scopus 로고
    • Towards a practical species concept for cultivable bacteria
    • In: Claridge MF, Dawah HA, Wilson MR (eds) Chapman & Hall, London
    • Goodfellow M, Manfio GP, Chun J (1997) Towards a practical species concept for cultivable bacteria. In: Claridge MF, Dawah HA, Wilson MR (eds) Species: The units of biodiversity. Chapman & Hall, London, pp 25-59
    • (1997) Species: The Units of Biodiversity , pp. 25-59
    • Goodfellow, M.1    Manfio, G.P.2    Chun, J.3
  • 20
    • 34447305441 scopus 로고    scopus 로고
    • The Streptomyces violaceusniger clade: A home for streptomycetes with rugose ornamented spores
    • Goodfellow M, Kumar Y, Labeda DP, Sembiring L (2007) The Streptomyces violaceusniger clade: A home for streptomycetes with rugose ornamented spores. Antonie Van Leeuwenhoek 92:173-199
    • (2007) Antonie Van Leeuwenhoek , vol.92 , pp. 173-199
    • Goodfellow, M.1    Kumar, Y.2    Labeda, D.P.3    Sembiring, L.4
  • 22
    • 40449120034 scopus 로고    scopus 로고
    • A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: Use of multilocus sequence analysis for streptomycete systematics
    • Guo Y, Zheng W, Rong X, Huang Y (2008) A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: Use of multilocus sequence analysis for streptomycete systematics. Int J Syst Evol Microbiol 58:149-159
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 149-159
    • Guo, Y.1    Zheng, W.2    Rong, X.3    Huang, Y.4
  • 23
    • 1642490621 scopus 로고    scopus 로고
    • Microbial endemism and biogeography
    • In: Bull AT (ed) ASM Press, Washington
    • Hedlund BP, Staley JT (2004) Microbial endemism and biogeography. In: Bull AT (ed) Microbial diversity and bioprospecting. ASM Press, Washington, pp 225-231
    • (2004) Microbial Diversity and Bioprospecting , pp. 225-231
    • Hedlund, B.P.1    Staley, J.T.2
  • 26
    • 15544378012 scopus 로고
    • Adaptative hierarchical clustering schemes
    • Jaccard P (1908) Adaptative hierarchical clustering schemes. Syst Zool 19:58-82
    • (1908) Syst Zool , vol.19 , pp. 58-82
    • Jaccard, P.1
  • 27
    • 4143136662 scopus 로고    scopus 로고
    • Ecological significance of microdiversity: Identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies
    • Jaspers E, Overmann J (2004) Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. Appl Environ Microbiol 70:4831-4839
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4831-4839
    • Jaspers, E.1    Overmann, J.2
  • 28
    • 33749391642 scopus 로고    scopus 로고
    • Biogeography of the marine actinomycete Salinispora
    • Jensen PR, Mafnas C (2006) Biogeography of the marine actinomycete Salinispora. Environ Microbiol 8:1881-1888
    • (2006) Environ Microbiol , vol.8 , pp. 1881-1888
    • Jensen, P.R.1    Mafnas, C.2
  • 30
    • 33847186292 scopus 로고    scopus 로고
    • Species specific secondary metabolite production in marine actinomycetes of the genus Salinispora
    • Jensen PR, Williams PG, Oh CD, Zeigler L, Fenical W (2007) Species specific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl Environ Microbiol 73:1146-1152
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1146-1152
    • Jensen, P.R.1    Williams, P.G.2    Oh, C.D.3    Zeigler, L.4    Fenical, W.5
  • 33
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 35
    • 0002222776 scopus 로고    scopus 로고
    • HIV signature and sequence variation analysis. Computational analysis of HIV molecular sequences
    • In: Rodrigo AG, Learn GH (eds) Kluwer Academic Publishers, Boston
    • Korber B (2000) HIV signature and sequence variation analysis. Computational analysis of HIV molecular sequences. In: Rodrigo AG, Learn GH (eds) Computational and evolutionary analysis of HIV molecular sequences. Kluwer Academic Publishers, Boston, pp 55-72
    • (2000) Computational and Evolutionary Analysis of HIV Molecular Sequences , pp. 55-72
    • Korber, B.1
  • 36
    • 0002020119 scopus 로고
    • A study of actinophages: Morphology, serological relationship and host range
    • In: Freerksen I, Tárnok I, Thumim JH (eds) Gustav Fischer Verlag, Stuttgart
    • Korn F, Weingärtner B, Kutzner HJ (1978) A study of actinophages: morphology, serological relationship and host range. In: Freerksen I, Tárnok I, Thumim JH (eds) Genetics of the Actinomycetales. Gustav Fischer Verlag, Stuttgart, pp 251-270
    • (1978) Genetics of the Actinomycetales , pp. 251-270
    • Korn, F.1    Weingärtner, B.2    Kutzner, H.J.3
  • 37
    • 34848905404 scopus 로고    scopus 로고
    • Diversity and geographical distribution of members of the Streptomyces violaceusniger 16S rRNA gene clade detected by clade-specific PCR primers
    • Kumar Y, Aiemsum-ang P, Ward AC, Goodfellow M (2007) Diversity and geographical distribution of members of the Streptomyces violaceusniger 16S rRNA gene clade detected by clade-specific PCR primers. FEMS Microbiol Ecol 62:54-63
    • (2007) FEMS Microbiol Ecol , vol.62 , pp. 54-63
    • Kumar, Y.1    Aiemsum-ang, P.2    Ward, A.C.3    Goodfellow, M.4
  • 39
    • 0344931878 scopus 로고    scopus 로고
    • Adapt globally, act locally: The effect of selective sweeps on bacterial sequence diversity
    • Majewski J, Cohan FM (1999) Adapt globally, act locally: The effect of selective sweeps on bacterial sequence diversity. Genetics 152:1459-1474
    • (1999) Genetics , vol.152 , pp. 1459-1474
    • Majewski, J.1    Cohan, F.M.2
  • 40
    • 40449086789 scopus 로고    scopus 로고
    • Advantages of multilocus sequence analysis for taxonomic studies: A case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium)
    • Martens M, Dawyndt P, Coopman R, Gillis M, De Vos P, Willems A (2008) Advantages of multilocus sequence analysis for taxonomic studies: A case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). Int J Syst Evol Microbiol 58:200-214
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 200-214
    • Martens, M.1    Dawyndt, P.2    Coopman, R.3    Gillis, M.4    De Vos, P.5    Willems, A.6
  • 42
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
    • Palys T, Nakamura LK, Cohan FM (1997) Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data. Int J Syst Evol Microbiol 47:1145-1156
    • (1997) Int J Syst Evol Microbiol , vol.47 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 44
    • 33744728757 scopus 로고    scopus 로고
    • Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana Trench
    • Pathom-aree W, Stach JEM, Ward AC, Horikoshi K, Bull AT, Goodfellow M (2006) Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana Trench. Extremophiles 10:181-189
    • (2006) Extremophiles , vol.10 , pp. 181-189
    • Pathom-aree, W.1    Stach, J.E.M.2    Ward, A.C.3    Horikoshi, K.4    Bull, A.T.5    Goodfellow, M.6
  • 45
    • 4444264936 scopus 로고    scopus 로고
    • Metabolites from symbiotic bacteria
    • Piel J (2004) Metabolites from symbiotic bacteria. Nat Prod Rep 21:519-538
    • (2004) Nat Prod Rep , vol.21 , pp. 519-538
    • Piel, J.1
  • 46
    • 0032474853 scopus 로고    scopus 로고
    • Adaptive radiation in a heterogeneous environment
    • Rainey PB, Travisano M (1998) Adaptive radiation in a heterogeneous environment. Nature 394:69-72
    • (1998) Nature , vol.394 , pp. 69-72
    • Rainey, P.B.1    Travisano, M.2
  • 47
    • 33847327474 scopus 로고    scopus 로고
    • Biogeography: An emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution
    • Ramette A, Tiedje JM (2007) Biogeography: An emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution. Microbiol Ecol 5:197-207
    • (2007) Microbiol Ecol , vol.5 , pp. 197-207
    • Ramette, A.1    Tiedje, J.M.2
  • 50
    • 0000329594 scopus 로고
    • Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likehood, minimum-evolution, and neighbor-joining methods of phylogenetic tree construction in obtaining the correct tree
    • Saitou N, Imanashi T (1989) Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likehood, minimum-evolution, and neighbor-joining methods of phylogenetic tree construction in obtaining the correct tree. Mol Biol Evol 6:514-525
    • (1989) Mol Biol Evol , vol.6 , pp. 514-525
    • Saitou, N.1    Imanashi, T.2
  • 51
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 52
    • 0034450928 scopus 로고    scopus 로고
    • Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria
    • Sembiring L, Ward AC, Goodfellow M (2000) Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria. Antonie Van Leeuwenhoek 78:353-366
    • (2000) Antonie Van Leeuwenhoek , vol.78 , pp. 353-366
    • Sembiring, L.1    Ward, A.C.2    Goodfellow, M.3
  • 54
    • 0000825481 scopus 로고
    • A statistical method for evaluating systematic relationships
    • Sokal RR, Michener CD (1958) A statistical method for evaluating systematic relationships. Kansas Univ Sci Bull 38:1409-1438
    • (1958) Kansas Univ Sci Bull , vol.38 , pp. 1409-1438
    • Sokal, R.R.1    Michener, C.D.2
  • 56
    • 0032697215 scopus 로고    scopus 로고
    • Poles apart: Biodiversity and biogeography of sea ice bacteria
    • Staley JT, Gosink JJ (1999) Poles apart: Biodiversity and biogeography of sea ice bacteria. Annu Rev Microbiol 53:189-215
    • (1999) Annu Rev Microbiol , vol.53 , pp. 189-215
    • Staley, J.T.1    Gosink, J.J.2
  • 57
    • 14744287642 scopus 로고    scopus 로고
    • Antimicrobials
    • In: Bull AT (ed) ASM Press, Washington
    • Strohl W (2004) Antimicrobials. In: Bull AT (ed) Microbial diversity and bioprospecting. ASM Press, Washington, pp 288-313
    • (2004) Microbial Diversity and Bioprospecting , pp. 288-313
    • Strohl, W.1
  • 59
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 61
    • 6444225836 scopus 로고    scopus 로고
    • Phylogeny and functionality: Taxonomy as a roadmap to genes
    • In: Bull AT (ed) ASP Press, Washington
    • Ward AC, Goodfellow M (2004) Phylogeny and functionality: Taxonomy as a roadmap to genes. In: Bull AT (ed) Microbial diversity and bioprospecting. ASP Press, Washington, pp 288-313
    • (2004) Microbial Diversity and Bioprospecting , pp. 288-313
    • Ward, A.C.1    Goodfellow, M.2
  • 62
    • 0034752042 scopus 로고    scopus 로고
    • How many antibiotics are produced by the genus Streptomyces?
    • Watve MG, Tickoo R, Jog MM, Bhole BD (2001) How many antibiotics are produced by the genus Streptomyces? Arch Microbiol 176:386-390
    • (2001) Arch Microbiol , vol.176 , pp. 386-390
    • Watve, M.G.1    Tickoo, R.2    Jog, M.M.3    Bhole, B.D.4
  • 63
    • 33751226606 scopus 로고    scopus 로고
    • Allopatric origins of microbial species
    • Whitaker RJ (2006) Allopatric origins of microbial species. Philos Trans Roy Soc B 361:1975-1984
    • (2006) Philos Trans Roy Soc B , vol.361 , pp. 1975-1984
    • Whitaker, R.J.1
  • 64
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic archaea
    • Whitaker RJ, Grogan DW, Taylor JW (2003) Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301:976-978
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3
  • 65
    • 8144220848 scopus 로고    scopus 로고
    • Historical biogeography, ecology and species richness
    • Wiens JJ, Donoghue MJ (2004) Historical biogeography, ecology and species richness. Trends Ecol Evol 19:639-644
    • (2004) Trends Ecol Evol , vol.19 , pp. 639-644
    • Wiens, J.J.1    Donoghue, M.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.