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Volumn 7, Issue , 2006, Pages

Querying the public databases for sequences using complex keywords contained in the feature lines

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICIANS; COMPLEX QUERIES; FEATURE LINES; HIGH THROUGHPUT TECHNOLOGY; LARGE DATASETS; PERL SCRIPTS; PUBLIC DATABASE; USER FRIENDLY INTERFACE;

EID: 33645027388     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-45     Document Type: Article
Times cited : (6)

References (26)
  • 1
    • 84874659635 scopus 로고    scopus 로고
    • EBI statistics
    • EBI statistics [http://www3.ebi.ac.uk/Services/DBStats/]
  • 3
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Slater GS, Birney E: Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 2005, 6:31.
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 4
    • 0022118360 scopus 로고
    • ACNUC - A portable retrieval system for nucleic acid sequence databases: Logical and physical designs and usage
    • Gouy M, Gautier C, Attimonelli M, Lanave C, di Paola G: ACNUC - a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. Comput Appl Biosci 1985, 1:167-172.
    • (1985) Comput Appl Biosci , vol.1 , pp. 167-172
    • Gouy, M.1    Gautier, C.2    Attimonelli, M.3    Lanave, C.4    di Paola, G.5
  • 6
    • 0027457706 scopus 로고
    • SRS - An indexing and retrieval tool for flat file data libraries
    • Etzold T, Argos P: SRS - an indexing and retrieval tool for flat file data libraries. Comput Appl Biosci 1993, 9:49-57.
    • (1993) Comput Appl Biosci , vol.9 , pp. 49-57
    • Etzold, T.1    Argos, P.2
  • 7
    • 84874650859 scopus 로고    scopus 로고
    • Location of EMBL release files (EBI) [ftp://ftp.ebi.ac.uk/pub/databases/ embl/release/]
    • Location of EMBL release files (EBI) [ftp://ftp.ebi.ac.uk/pub/databases/ embl/release/]
  • 8
    • 84874646797 scopus 로고    scopus 로고
    • BioSQL
    • BioSQL [http://cvs.bioperl.org/cgi-bin/viewcvs/viewcvs.cgi/biosql-schema/ sql/?cvsroot=biosql]
  • 9
    • 84874653865 scopus 로고    scopus 로고
    • bioperl-db script
    • bioperl-db script [http://bio.perl.org/Core/Latest/index.shtml]
  • 10
    • 84874662968 scopus 로고    scopus 로고
    • Location to download EmbIEx
    • Location to download EmbIEx [http://bioinfo.unice.fr/softwares en.htm]
  • 11
    • 24044503361 scopus 로고    scopus 로고
    • Identification of staphylococci by 16S internal transcribed spacer rRNA gene restriction fragment length polymorphism
    • Sudagidan M, Yenidunya AF, Gunes H: Identification of staphylococci by 16S internal transcribed spacer rRNA gene restriction fragment length polymorphism. J Med Microbiol 2005, 54:823-826.
    • (2005) J Med Microbiol , vol.54 , pp. 823-826
    • Sudagidan, M.1    Yenidunya, A.F.2    Gunes, H.3
  • 12
    • 16844377833 scopus 로고    scopus 로고
    • Detection and genotyping of Mycobacterium species from clinical isolates and specimens by oligonucleotide array
    • Park H, Jang H, Song E, Chang CL, Lee M, Jeong S, Park J, Kang B, Kim C: Detection and genotyping of Mycobacterium species from clinical isolates and specimens by oligonucleotide array. J Clin Microbiol 2005, 43:1782-1788.
    • (2005) J Clin Microbiol , vol.43 , pp. 1782-1788
    • Park, H.1    Jang, H.2    Song, E.3    Chang, C.L.4    Lee, M.5    Jeong, S.6    Park, J.7    Kang, B.8    Kim, C.9
  • 13
    • 16844381869 scopus 로고    scopus 로고
    • 16S-23S rRNA gene internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Porphyromonas
    • Conrads G, Citron DM, Tyrrell KL, Horz HP, Goldstein EJ: 16S-23S rRNA gene internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Porphyromonas. Int J Syst Evol Microbiol 2005, 55:607-613.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 607-613
    • Conrads, G.1    Citron, D.M.2    Tyrrell, K.L.3    Horz, H.P.4    Goldstein, E.J.5
  • 15
    • 12244263975 scopus 로고    scopus 로고
    • Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay
    • Suzuki MT, Preston CM, Beja O, de la Torre JR, Steward GF, DeLong EF: Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay. Microb Ecol 2004, 48:473-488.
    • (2004) Microb Ecol , vol.48 , pp. 473-488
    • Suzuki, M.T.1    Preston, C.M.2    Beja, O.3    de la Torre, J.R.4    Steward, G.F.5    DeLong, E.F.6
  • 16
    • 7744226707 scopus 로고    scopus 로고
    • Oligonucleotide microarray for identification of Bacillus anthracis based on intergenic transcribed spacers in ribosomal DNA
    • Nubel U, Schmidt PM, Reiss E, Bier F, Beyer W, Naumann D: Oligonucleotide microarray for identification of Bacillus anthracis based on intergenic transcribed spacers in ribosomal DNA. FEMS Microbiol Lett 2004, 240:215-223.
    • (2004) FEMS Microbiol Lett , vol.240 , pp. 215-223
    • Nubel, U.1    Schmidt, P.M.2    Reiss, E.3    Bier, F.4    Beyer, W.5    Naumann, D.6
  • 17
    • 23744452412 scopus 로고    scopus 로고
    • Study of Spanish grape mycobiota and ochratoxin A production by Isolates of Aspergillus tubingensis and other members of Aspergillus section Nigri
    • Medina A, Mateo R, Lopez-Ocana L, Valle-Algarra FM, Jimenez M: Study of Spanish grape mycobiota and ochratoxin A production by Isolates of Aspergillus tubingensis and other members of Aspergillus section Nigri. Appl Environ Microbiol 2005, 71:4696-4702.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4696-4702
    • Medina, A.1    Mateo, R.2    Lopez-Ocana, L.3    Valle-Algarra, F.M.4    Jimenez, M.5
  • 19
    • 24344448305 scopus 로고    scopus 로고
    • Fungal diversity in rock beneath a crustose lichen as revealed by molecular markers
    • Bjelland T, Ekman S: Fungal diversity in rock beneath a crustose lichen as revealed by molecular markers. Microb Ecol 2005, 49:598-603.
    • (2005) Microb Ecol , vol.49 , pp. 598-603
    • Bjelland, T.1    Ekman, S.2
  • 21
    • 20644431985 scopus 로고    scopus 로고
    • Genetic identification and detection of human pathogenic Rhizopus species, a major mucormycosis agent, by multiplex PCR based on internal transcribed spacer region of rRNA gene
    • Nagao K, Ota T, Tanikawa A, Takae Y, Mori T, Udagawa S, Nishikawa T: Genetic identification and detection of human pathogenic Rhizopus species, a major mucormycosis agent, by multiplex PCR based on internal transcribed spacer region of rRNA gene. J Dermatol Sci 2005, 39:23-31.
    • (2005) J Dermatol Sci , vol.39 , pp. 23-31
    • Nagao, K.1    Ota, T.2    Tanikawa, A.3    Takae, Y.4    Mori, T.5    Udagawa, S.6    Nishikawa, T.7
  • 22
    • 18544371066 scopus 로고    scopus 로고
    • Assessment of ribosomal large-subunit D1-D2, internal transcribed spacer 1, and internal transcribed spacer 2 regions as targets for molecular identification of medically important Aspergillus species
    • Hinrikson HP, Hurst SF, Lott TJ, Warnock DW, Morrison CJ: Assessment of ribosomal large-subunit D1-D2, internal transcribed spacer 1, and internal transcribed spacer 2 regions as targets for molecular identification of medically important Aspergillus species. J Clin Microbiol 2005, 43:2092-2103.
    • (2005) J Clin Microbiol , vol.43 , pp. 2092-2103
    • Hinrikson, H.P.1    Hurst, S.F.2    Lott, T.J.3    Warnock, D.W.4    Morrison, C.J.5
  • 23
    • 13844276553 scopus 로고    scopus 로고
    • Use of PCR targeting of internal transcribed spacer regions and single-stranded conformation polymorphism analysis of sequence variation in different regions of rrna genes in fungi for rapid diagnosis of mycotic keratitis
    • Kumar M, Shukla PK: Use of PCR targeting of internal transcribed spacer regions and single-stranded conformation polymorphism analysis of sequence variation in different regions of rrna genes in fungi for rapid diagnosis of mycotic keratitis. J Clin Microbiol 2005, 43:662-668.
    • (2005) J Clin Microbiol , vol.43 , pp. 662-668
    • Kumar, M.1    Shukla, P.K.2
  • 24
    • 84874656843 scopus 로고    scopus 로고
    • List of servers offering SRS
    • List of servers offering SRS [http://downloads.lionbio.co.uk/publicsrs.html]
  • 25
    • 84874661304 scopus 로고    scopus 로고
    • ACNUC client (on the pbil server)
    • ACNUC client (on the pbil server) [http://pbil.univ-lyonl.fr/software/query.html]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.