-
1
-
-
0030996742
-
MATCH-BOX server: A multiple sequence alignment tool placing emphasis on reliability
-
Deperieux, E., Baudoux, G., Briffeuil, P., Reginster, I., De Bolle, X., Vinals, C. and Feytmans, E. (1997) MATCH-BOX server: a multiple sequence alignment tool placing emphasis on reliability. Comput. Applic. Biosci., 13, 249-256.
-
(1997)
Comput. Applic. Biosci.
, vol.13
, pp. 249-256
-
-
Deperieux, E.1
Baudoux, G.2
Briffeuil, P.3
Reginster, I.4
De Bolle, X.5
Vinals, C.6
Feytmans, E.7
-
2
-
-
0029174347
-
Multiple alignment using hidden Markov models
-
Eddy, S.R. (1995) Multiple alignment using hidden Markov models. ISMB, 3, 114-120.
-
(1995)
ISMB
, vol.3
, pp. 114-120
-
-
Eddy, S.R.1
-
3
-
-
0030582739
-
Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments
-
Gotoh, O. (1996) Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments. J. Mol. Biol., 264, 823-838.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 823-838
-
-
Gotoh, O.1
-
4
-
-
0031865006
-
Touring protein fold space with DALI/ FSSP
-
Holm, L. and Sander, C. (1998) Touring protein fold space with DALI/ FSSP. Nucleic Acids Res., 26, 316-319.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 316-319
-
-
Holm, L.1
Sander, C.2
-
5
-
-
0030659457
-
PDBsum: A web-based database of summaries and analyses of all PDB structures
-
Laskowski, R.A., Hutchinson, E.G., Michie, A.D., Wallace, A.C., Jones, M.L. and Thornton, J.M. (1997) PDBsum: A Web-based database of summaries and analyses of all PDB structures. Trends Biochem. Sci., 22, 488-490.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 488-490
-
-
Laskowski, R.A.1
Hutchinson, E.G.2
Michie, A.D.3
Wallace, A.C.4
Jones, M.L.5
Thornton, J.M.6
-
6
-
-
0028838717
-
Threading a database of protein cores
-
Madej, T., Gibrat, J.F. and Bryant, S.H. (1995) Threading a database of protein cores. Proteins, 3, 356-369.
-
(1995)
Proteins
, vol.3
, pp. 356-369
-
-
Madej, T.1
Gibrat, J.F.2
Bryant, S.H.3
-
7
-
-
0028341506
-
Comparative analysis of multiple protein-sequence alignment methods
-
McClure, M.A., Vasi, T.K. and Fitch, W.M. (1994) Comparative analysis of multiple protein-sequence alignment methods. Mol. Biol. Evol., 11, 571-592.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 571-592
-
-
McClure, M.A.1
Vasi, T.K.2
Fitch, W.M.3
-
8
-
-
0031766401
-
HOMSTRAD: A database of protein structure alignments for homologous families
-
in press
-
Mizuguchi, K., Deane, C.M., Blundell, T.L. and Overington, J.P. (1998) HOMSTRAD: a database of protein structure alignments for homologous families. Protein Sci., in press.
-
(1998)
Protein Sci.
-
-
Mizuguchi, K.1
Deane, C.M.2
Blundell, T.L.3
Overington, J.P.4
-
9
-
-
0029861894
-
Multiple DNA and protein sequence alignment based on segment-to-segment comparison
-
Morgenstern, B., Dress, A. and Werner, T. (1996) Multiple DNA and protein sequence alignment based on segment-to-segment comparison. Proc. Natl Acad. Sci. USA, 93, 12098-12103.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 12098-12103
-
-
Morgenstern, B.1
Dress, A.2
Werner, T.3
-
10
-
-
0031829993
-
COFFEE: An objective function for multiple sequence alignments
-
Notredame, C., Holm, L. and Higgins, D.G. (1998) COFFEE: an objective function for multiple sequence alignments. Bioinformatics, 5, 407-422.
-
(1998)
Bioinformatics
, vol.5
, pp. 407-422
-
-
Notredame, C.1
Holm, L.2
Higgins, D.G.3
-
11
-
-
0029918306
-
A databank (3D-ali) collecting related protein sequences and structures
-
Pascarella, S., Milpetz, F. and Argos, P. (1996) A databank (3D-ali) collecting related protein sequences and structures. Protein Eng., 9, 249-251.
-
(1996)
Protein Eng.
, vol.9
, pp. 249-251
-
-
Pascarella, S.1
Milpetz, F.2
Argos, P.3
-
12
-
-
0030879419
-
The HSSP database of protein structure-sequence alignments
-
Schneider, R., de Daruvar, A. and Sander, C. (1997) The HSSP database of protein structure-sequence alignments. Nucleic Acids Res., 25, 226-230.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 226-230
-
-
Schneider, R.1
De Daruvar, A.2
Sander, C.3
-
13
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
Schultz, J., Milpetz, F., Bork, P. and Ponting, C.P. (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc. Natl Acad. Sci. USA, 95, 5857-5864.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
14
-
-
0026527758
-
Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling
-
Smith, R.F. and Smith, T.F. (1992) Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling. Protein Eng., 5, 35-41.
-
(1992)
Protein Eng.
, vol.5
, pp. 35-41
-
-
Smith, R.F.1
Smith, T.F.2
-
15
-
-
0344022927
-
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
-
Sonnhammer, E.L., Eddy, S.R., Birney, E., Bateman, A. and Durbin, R. (1998) Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res., 24, 17-20.
-
(1998)
Nucleic Acids Res.
, vol.24
, pp. 17-20
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
16
-
-
0032530713
-
CAMPASS: A database of structurally aligned protein superfamilies
-
Sowdhamini, R., Burke, D.F., Huang, J., Mizuguchi, K., Hampapathalu, Nagarajaram, A., Srinivasan, N., Steward, R.E. and Blundell, T.L. (1998) CAMPASS: a database of structurally aligned protein superfamilies. Structure, 6, 1087-1094.
-
(1998)
Structure
, vol.6
, pp. 1087-1094
-
-
Sowdhamini, R.1
Burke, D.F.2
Huang, J.3
Mizuguchi, K.4
Hampapathalu5
Nagarajaram, A.6
Srinivasan, N.7
Steward, R.E.8
Blundell, T.L.9
-
17
-
-
0344022926
-
Protein structure comparison using iterated double dynamic programming
-
in press
-
Taylor, W.R. (1998) Protein structure comparison using iterated double dynamic programming. Protein Sci., in press.
-
(1998)
Protein Sci.
-
-
Taylor, W.R.1
-
18
-
-
0031574072
-
The CLUSTAL X windows interface: Flexible strategies for multiple sequence aligment aided by quality analysis tools
-
Thompson, J.D., Gibson, T.J, Plewniak, F., Jeanmougin, F. and Higgins, D.G. (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence aligment aided by quality analysis tools. Nucleic Acids Res., 24, 4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
|