메뉴 건너뛰기




Volumn 21, Issue 4, 2008, Pages 1151-1159

Geographically variable selection in Ambystoma tigrinum virus (Iridoviridae) throughout the western USA

Author keywords

OH steroid oxidoreductase; Ambystoma tigrinum virus; Caspase activation and recruitment domain; Coevolution; eIF 2 ; Iridoviridae; Phylogeny; Ranavirus; Selection

Indexed keywords

AMPHIBIAN; FITNESS; GEOGRAPHICAL DISTRIBUTION; LOCAL ADAPTATION; PHYLOGENY; RECRUITMENT (POPULATION DYNAMICS); SELECTION; SPATIAL VARIATION; VIRULENCE; VIRUS;

EID: 45149109948     PISSN: 1010061X     EISSN: 14209101     Source Type: Journal    
DOI: 10.1111/j.1420-9101.2008.01537.x     Document Type: Article
Times cited : (20)

References (48)
  • 1
    • 0033158443 scopus 로고    scopus 로고
    • Pathology, isolation, and preliminary molecular characterization of a novel iridovirus from tiger salamanders in Saskatchewan
    • Bollinger, T.K., Mao, J., Schock, D., Brigham, R.M. Chinchar, V.G. 1999. Pathology, isolation, and preliminary molecular characterization of a novel iridovirus from tiger salamanders in Saskatchewan. J. Wildl. Dis. 35:413 429.
    • (1999) J. Wildl. Dis. , vol.35 , pp. 413-429
    • Bollinger, T.K.1    Mao, J.2    Schock, D.3    Brigham, R.M.4    Chinchar, V.G.5
  • 2
    • 0036008606 scopus 로고    scopus 로고
    • Ranaviruses (family Iridoviridae): Emerging cold-blooded killers - Brief review
    • Chinchar, V.G. 2002. Ranaviruses (family Iridoviridae): emerging cold-blooded killers - brief review. Arch. Virol. 147:447 470.
    • (2002) Arch. Virol. , vol.147 , pp. 447-470
    • Chinchar, V.G.1
  • 3
    • 0000947505 scopus 로고
    • Distribution, habitats and life-history variation in the tiger salamander, Ambystoma tigrinum, in east-central and southeast Arizona
    • Collins, J. 1981. Distribution, habitats and life-history variation in the tiger salamander, Ambystoma tigrinum, in east-central and southeast Arizona. Copeia 1981:666 675.
    • (1981) Copeia , vol.1981 , pp. 666-675
    • Collins, J.1
  • 4
    • 0029563023 scopus 로고
    • A method for estimating the numbers of synonymous and non-synonymous substitutions per site
    • Comeron, J.M. 1995. A method for estimating the numbers of synonymous and non-synonymous substitutions per site. J. Mol. Evol. 41:1152 1159.
    • (1995) J. Mol. Evol. , vol.41 , pp. 1152-1159
    • Comeron, J.M.1
  • 5
    • 0030816742 scopus 로고    scopus 로고
    • Can three incongruence tests predict when data should be combined?
    • Cunningham, C.W. 1997a. Can three incongruence tests predict when data should be combined? Mol. Biol. Evol. 14:733 740.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 733-740
    • Cunningham, C.W.1
  • 6
    • 0031224810 scopus 로고    scopus 로고
    • Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods
    • Cunningham, C.W. 1997b. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods Syst. Biol. 46:464 478.
    • (1997) Syst. Biol. , vol.46 , pp. 464-478
    • Cunningham, C.W.1
  • 7
    • 0037337826 scopus 로고    scopus 로고
    • Infectious disease and amphibian population declines
    • Daszak, P., Cunningham, A.A. Hyatt, A.D. 2003. Infectious disease and amphibian population declines. Divers. Distrib. 9:141 150.
    • (2003) Divers. Distrib. , vol.9 , pp. 141-150
    • Daszak, P.1    Cunningham, A.A.2    Hyatt, A.D.3
  • 10
    • 0026443745 scopus 로고
    • Phylogenies from restriction sites - A maximum-likelihood approach
    • Felsenstein, J. 1992. Phylogenies from restriction sites - a maximum-likelihood approach. Evolution 46:173.
    • (1992) Evolution , vol.46 , pp. 173
    • Felsenstein, J.1
  • 11
    • 33750164674 scopus 로고    scopus 로고
    • First case of ranavirus-associated morbidity and mortality in natural populations of the South American frog Atelognathus patagonicus
    • Fox, S.F., Greer, A.L., Torres-Cervantes, R. Collins, J.P. 2006. First case of ranavirus-associated morbidity and mortality in natural populations of the South American frog Atelognathus patagonicus. Dis. Aquat. Organ. 72:87 92.
    • (2006) Dis. Aquat. Organ. , vol.72 , pp. 87-92
    • Fox, S.F.1    Greer, A.L.2    Torres-Cervantes, R.3    Collins, J.P.4
  • 12
    • 14844313275 scopus 로고    scopus 로고
    • Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree
    • Gadagkar, S.R., Rosenberg, M.S. Kumar, S. 2005. Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. J. Exp. Zool. B: Mol. Dev. Evol. 304:64 74.
    • (2005) J. Exp. Zool. B: Mol. Dev. Evol. , vol.304 , pp. 64-74
    • Gadagkar, S.R.1    Rosenberg, M.S.2    Kumar, S.3
  • 13
    • 0036128336 scopus 로고    scopus 로고
    • Local adaptation and the geometry of host-parasite coevolution
    • Gandon, S. 2002. Local adaptation and the geometry of host-parasite coevolution. Ecol. Lett. 5:246 256.
    • (2002) Ecol. Lett. , vol.5 , pp. 246-256
    • Gandon, S.1
  • 17
    • 32044457700 scopus 로고    scopus 로고
    • Mastercard: A priceless link to innate immunity
    • Hiscott, J., Lin, R., Nakhaei, P. Paz, S. 2006. Mastercard: a priceless link to innate immunity. Trends Mol. Med. 12:53 56.
    • (2006) Trends Mol. Med. , vol.12 , pp. 53-56
    • Hiscott, J.1    Lin, R.2    Nakhaei, P.3    Paz, S.4
  • 18
    • 33646586721 scopus 로고    scopus 로고
    • A Dirichlet process model for detecting positive selection in protein-coding DNA sequences
    • Huelsenbeck, J.P., Jain, S., Frost, S.W.D. Pond, S.L.K. 2006. A Dirichlet process model for detecting positive selection in protein-coding DNA sequences. Proc. Natl Acad. Sci. U. S. A. 103:6263 6268.
    • (2006) Proc. Natl Acad. Sci. U. S. A. , vol.103 , pp. 6263-6268
    • Huelsenbeck, J.P.1    Jain, S.2    Frost, S.W.D.3    Pond, S.L.K.4
  • 19
    • 0031592277 scopus 로고    scopus 로고
    • Isolation of a lethal virus from the endangered tiger salamander Ambystoma tigrinum stebbinsi
    • Jancovich, J., Davidson, E., Morado, J., Jacobs, B. Collins, J. 1997. Isolation of a lethal virus from the endangered tiger salamander Ambystoma tigrinum stebbinsi. Dis. Aquat. Organ. 31:167.
    • (1997) Dis. Aquat. Organ. , vol.31 , pp. 167
    • Jancovich, J.1    Davidson, E.2    Morado, J.3    Jacobs, B.4    Collins, J.5
  • 22
    • 30544444850 scopus 로고    scopus 로고
    • Card games between virus and host get a new player
    • Johnson, C.L. Gale, M.J. 2006. Card games between virus and host get a new player. Trends Immunol. 27:1 4.
    • (2006) Trends Immunol. , vol.27 , pp. 1-4
    • Johnson, C.L.1    Gale, M.J.2
  • 23
    • 3242810318 scopus 로고    scopus 로고
    • Mega3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., Tamura, K. Nei, M. 2004. mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinformatics 5:150 163.
    • (2004) Brief Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 24
    • 2942722691 scopus 로고    scopus 로고
    • Inhibition of PKR by vaccinia virus: Role of the n- and c-terminal domains of e3l
    • Langland, J.O. Jacobs, B.L. 2004. Inhibition of PKR by vaccinia virus: role of the n- and c-terminal domains of e3l. Virology 324:419 429.
    • (2004) Virology , vol.324 , pp. 419-429
    • Langland, J.O.1    Jacobs, B.L.2
  • 25
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and non-synonymous substitution
    • Li, W.H. 1993. Unbiased estimation of the rates of synonymous and non-synonymous substitution. J. Mol. Evol. 36:96 99.
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • Li, W.H.1
  • 27
    • 0036018468 scopus 로고    scopus 로고
    • Rapid differentiation of Australian, European and American ranaviruses based on variation in major capsid protein gene sequence
    • Marsh, I.B., Whittington, R.J., O'Rourke, B., Hyatt, A.D. Chisholm, O. 2002. Rapid differentiation of Australian, European and American ranaviruses based on variation in major capsid protein gene sequence. Mol. Cell. Probes 16:137 151.
    • (2002) Mol. Cell. Probes , vol.16 , pp. 137-151
    • Marsh, I.B.1    Whittington, R.J.2    O'Rourke, B.3    Hyatt, A.D.4    Chisholm, O.5
  • 28
    • 0242487488 scopus 로고    scopus 로고
    • Performance-based selection of likelihood models for phylogeny estimation
    • Minin, V., Abdo, Z., Joyce, P. Sullivan, J. 2003. Performance-based selection of likelihood models for phylogeny estimation. Syst. Biol. 52:674 683.
    • (2003) Syst. Biol. , vol.52 , pp. 674-683
    • Minin, V.1    Abdo, Z.2    Joyce, P.3    Sullivan, J.4
  • 29
    • 1642553357 scopus 로고    scopus 로고
    • Neutralizing innate host defenses to control viral translation in Hsv-1 infected cells
    • Mohr, I. 2004. Neutralizing innate host defenses to control viral translation in Hsv-1 infected cells. Int. Rev. Immunol. 23:199 220.
    • (2004) Int. Rev. Immunol. , vol.23 , pp. 199-220
    • Mohr, I.1
  • 30
    • 24644491815 scopus 로고    scopus 로고
    • The effect of migration on local adaptation in a coevolving host-parasite system
    • Morgan, A.D., Gandon, S. Buckling, A. 2005. The effect of migration on local adaptation in a coevolving host-parasite system. Nature 437:253 256.
    • (2005) Nature , vol.437 , pp. 253-256
    • Morgan, A.D.1    Gandon, S.2    Buckling, A.3
  • 31
    • 33746214712 scopus 로고    scopus 로고
    • Resistance of mRNA translation to acute endoplasmic reticulum stress-inducing agents in herpes simplex virus type 1-infected cells requires multiple virus-encoded functions
    • Mulvey, M., Arias, C. Mohr, I. 2006. Resistance of mRNA translation to acute endoplasmic reticulum stress-inducing agents in herpes simplex virus type 1-infected cells requires multiple virus-encoded functions. J. Virol. 80:7354 7363.
    • (2006) J. Virol. , vol.80 , pp. 7354-7363
    • Mulvey, M.1    Arias, C.2    Mohr, I.3
  • 33
    • 0027533924 scopus 로고
    • Evolution of the Zfx and Zfy genes: Rates and interdependence between the genes
    • Pamilo, P. Bianchi, N.O. 1993. Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol. Biol. Evol. 10:271 281.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 271-281
    • Pamilo, P.1    Bianchi, N.O.2
  • 34
    • 0036964355 scopus 로고    scopus 로고
    • New inferences from tree shape: Numbers of missing taxa and population growth rates
    • Pybus, O.G., Rambaut, A., Holmes, E.C. Harvey, P.H. 2002. New inferences from tree shape: numbers of missing taxa and population growth rates. Syst. Biol. 51:881 888.
    • (2002) Syst. Biol. , vol.51 , pp. 881-888
    • Pybus, O.G.1    Rambaut, A.2    Holmes, E.C.3    Harvey, P.H.4
  • 36
    • 33947144557 scopus 로고    scopus 로고
    • Polygenic traits and parasite local adaptation
    • Ridenhour, B.J. Nuismer, S.L. 2007. Polygenic traits and parasite local adaptation. Evolution 61:368 376.
    • (2007) Evolution , vol.61 , pp. 368-376
    • Ridenhour, B.J.1    Nuismer, S.L.2
  • 37
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F. Huelsenbeck, J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572 1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 39
    • 33947357710 scopus 로고    scopus 로고
    • Inhibition of cellular 2′-5′ oligoadenylate synthetase by the herpes simplex virus type 1 Us11 protein.
    • Sanchez, R. Mohr, I. 2007. Inhibition of cellular 2′-5′ oligoadenylate synthetase by the herpes simplex virus type 1 Us11 protein. J. Virol. 81:3455 3464.
    • (2007) J. Virol. , vol.81 , pp. 3455-3464
    • Sanchez, R.1    Mohr, I.2
  • 42
    • 33750959091 scopus 로고    scopus 로고
    • Higher intensity of purifying selection on >90% of the human genes revealed by the intrinsic replacement mutation rates
    • Subramanian, S. Kumar, S. 2006. Higher intensity of purifying selection on >90% of the human genes revealed by the intrinsic replacement mutation rates. Mol. Biol. Evol. 23:2283 2287.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 2283-2287
    • Subramanian, S.1    Kumar, S.2
  • 44
    • 0027453388 scopus 로고
    • Simple methods for testing the molecular evolutionary clock hypothesis
    • Tajima, F. 1993. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135:599 607.
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 46
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. Higgins, D.G. 1997. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876 4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 47
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • Thorne, J.L. Kishino, H. 2002. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51:689 702.
    • (2002) Syst. Biol. , vol.51 , pp. 689-702
    • Thorne, J.L.1    Kishino, H.2
  • 48
    • 0031741182 scopus 로고    scopus 로고
    • Estimating the rate of evolution of the rate of molecular evolution
    • Thorne, J.L., Kishino, H. Painter, I.S. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15:1647 1657.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1647-1657
    • Thorne, J.L.1    Kishino, H.2    Painter, I.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.