-
1
-
-
0026320866
-
-
Frauenfelder, H.; Sligar, S. G.; Wolynes, P. G. Science 1991, 254, 1598.
-
(1991)
Science
, vol.254
, pp. 1598
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
2
-
-
0028947257
-
-
Bryngelson, J. D.; Onuchic, J. N.; Socci, N. D.; Wolynes, P. G. Proteins: Struct., Fund., Genet. 1995, 21, 167.
-
(1995)
Proteins: Struct., Fund., Genet
, vol.21
, pp. 167
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
3
-
-
0034685604
-
-
Clementi, C.; Nymeyer, H.; Onuchic, J. N. J. Mol. Biol. 2000, 298, 937.
-
(2000)
J. Mol. Biol
, vol.298
, pp. 937
-
-
Clementi, C.1
Nymeyer, H.2
Onuchic, J.N.3
-
4
-
-
0037094108
-
-
Lyubovitsky, J. G.; Gray, H. B.; Winkler, J. R. J. Am. Chem. Soc. 2002, 124, 5481.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 5481
-
-
Lyubovitsky, J.G.1
Gray, H.B.2
Winkler, J.R.3
-
6
-
-
0017842051
-
-
Ueda, Y.; Taketomi, H.; Go, N. Biopolymers 1978, 17, 1531.
-
(1978)
Biopolymers
, vol.17
, pp. 1531
-
-
Ueda, Y.1
Taketomi, H.2
Go, N.3
-
8
-
-
0035943433
-
-
Clementi, C.; Jennings, P. A.; Onuchic, J. N. J. Mol. Biol. 2001, 311, 879.
-
(2001)
J. Mol. Biol
, vol.311
, pp. 879
-
-
Clementi, C.1
Jennings, P.A.2
Onuchic, J.N.3
-
9
-
-
0036829967
-
-
Lindberg, M.; Tangrot, J.; Oliveberg, M. Nat. Struct. Biol. 2002, 9, 818.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 818
-
-
Lindberg, M.1
Tangrot, J.2
Oliveberg, M.3
-
10
-
-
3142782241
-
-
Chavez, L. L.; Onuchic, J. N.; Clementi, C. J. Am. Chem. Soc. 2004, 126, 8426.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 8426
-
-
Chavez, L.L.1
Onuchic, J.N.2
Clementi, C.3
-
12
-
-
28844466824
-
-
Best, R. B.; Chen, Y. G.; Hummer, G. Structure 2005, 13, 1755.
-
(2005)
Structure
, vol.13
, pp. 1755
-
-
Best, R.B.1
Chen, Y.G.2
Hummer, G.3
-
13
-
-
33847777945
-
-
Hyeon, C.; Lorimer, G. H.; Thirumalai, D. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 18939.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 18939
-
-
Hyeon, C.1
Lorimer, G.H.2
Thirumalai, D.3
-
14
-
-
33747065536
-
-
Okazaki, K.; Koga, N.; Takada, S.; Onuchic, J. N.; Wolynes, P. G. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 11844.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 11844
-
-
Okazaki, K.1
Koga, N.2
Takada, S.3
Onuchic, J.N.4
Wolynes, P.G.5
-
15
-
-
33846847773
-
-
Whitford, P. C.; Miyashita, O.; Levy, Y.; Onuchic, J. N. J. Mol. Biol. 2007, 366, 1661.
-
(2007)
J. Mol. Biol
, vol.366
, pp. 1661
-
-
Whitford, P.C.1
Miyashita, O.2
Levy, Y.3
Onuchic, J.N.4
-
16
-
-
36749023459
-
-
Schug, A.; Whitford, P. C.; Levy, Y.; Onuchic, J. N. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 17674.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 17674
-
-
Schug, A.1
Whitford, P.C.2
Levy, Y.3
Onuchic, J.N.4
-
20
-
-
34250356054
-
-
Dudko, O. K.; Mathe, J.; Szabo, A.; Meiler, A.; Hummer, G. Biophys. J. 2007, 92, 4188.
-
(2007)
Biophys. J
, vol.92
, pp. 4188
-
-
Dudko, O.K.1
Mathe, J.2
Szabo, A.3
Meiler, A.4
Hummer, G.5
-
22
-
-
14044275168
-
-
Levy, Y.; Cho, S. S.; Shen, T.; Onuchic, J. N.; Wolynes, P. G. Proc. Nati. Acad. Sci. U.S.A. 2005, 102, 2373.
-
(2005)
Proc. Nati. Acad. Sci. U.S.A
, vol.102
, pp. 2373
-
-
Levy, Y.1
Cho, S.S.2
Shen, T.3
Onuchic, J.N.4
Wolynes, P.G.5
-
23
-
-
0000818624
-
-
McPhalen, C. A.; Svendsen, I.; Jonassen, I.; James, M. N. G. Proc. Natl. Acad. Sci. U.S.A. 1985, 82, 7242.
-
(1985)
Proc. Natl. Acad. Sci. U.S.A
, vol.82
, pp. 7242
-
-
McPhalen, C.A.1
Svendsen, I.2
Jonassen, I.3
James, M.N.G.4
-
24
-
-
0033612227
-
-
Luisi, D. L.; Kuhlman, B.; Sideras, K.; Evans, P. A.; Raleigh, D. P. J. Mol. Biol. 1999, 289, 167.
-
(1999)
J. Mol. Biol
, vol.289
, pp. 167
-
-
Luisi, D.L.1
Kuhlman, B.2
Sideras, K.3
Evans, P.A.4
Raleigh, D.P.5
-
25
-
-
0029783011
-
-
Osborne, M. J.; Breeze, A. L.; Lian, L. Y.; Reilly, A.; James, R.; Kleanthous, C.; Moore, G. R. Biochemistry 1996, 35, 9505.
-
(1996)
Biochemistry
, vol.35
, pp. 9505
-
-
Osborne, M.J.1
Breeze, A.L.2
Lian, L.Y.3
Reilly, A.4
James, R.5
Kleanthous, C.6
Moore, G.R.7
-
26
-
-
0242368163
-
-
Cheung, M. S.; Finke, J. M.; Callahan, B.; Onuchic, J. N. J. Phys. Chem B 2003, 107, 11193.
-
(2003)
J. Phys. Chem B
, vol.107
, pp. 11193
-
-
Cheung, M.S.1
Finke, J.M.2
Callahan, B.3
Onuchic, J.N.4
-
27
-
-
0032606941
-
-
Takada, S.; Luthey-Schulten, Z.; Wolynes, P. G. J. Chem. Phys. 1999, 110, 11616.
-
(1999)
J. Chem. Phys
, vol.110
, pp. 11616
-
-
Takada, S.1
Luthey-Schulten, Z.2
Wolynes, P.G.3
-
28
-
-
4444295047
-
-
Finke, J. M.; Cheung, M. S.; Onuchic, J. N. Biophys. J. 2004, 87, 1900.
-
(2004)
Biophys. J
, vol.87
, pp. 1900
-
-
Finke, J.M.1
Cheung, M.S.2
Onuchic, J.N.3
-
29
-
-
0036927818
-
-
Ding, F.; Dokholyan, N. V.; Buldyrev, S. V.; Stanley, H. E.; Shakhnovich, E. I. Biophys. J. 2002, 83, 3525.
-
(2002)
Biophys. J
, vol.83
, pp. 3525
-
-
Ding, F.1
Dokholyan, N.V.2
Buldyrev, S.V.3
Stanley, H.E.4
Shakhnovich, E.I.5
-
30
-
-
0034610275
-
-
Irback, A.; Sjunnesson, F.; Wallin, S. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 13614.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, pp. 13614
-
-
Irback, A.1
Sjunnesson, F.2
Wallin, S.3
-
33
-
-
0242443693
-
Force fields for protein simulations
-
Ponder, J. W.; Case, D. A. Force fields for protein simulations. Adv. Protein Chem. 2003, 66, 27-85.
-
(2003)
Adv. Protein Chem
, vol.66
, pp. 27-85
-
-
Ponder, J.W.1
Case, D.A.2
-
34
-
-
84986512474
-
-
Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem 1983, 4, 187.
-
(1983)
J. Comput. Chem
, vol.4
, pp. 187
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
35
-
-
27344436659
-
-
Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kale, L.; Schulten, K. J. Comput. Chem. 2005, 26, 1781.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1781
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
36
-
-
27344454932
-
-
Van der Spoel, D.; Lindahl, E.; Hess, B.; Groenhof, G.; Mark, A. E.; Berendsen, H. J. C. J. Comput. Chem 2005, 26, 1701.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1701
-
-
Van der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.C.6
-
38
-
-
33644536691
-
-
Gnanakaran, S.; Nussinov, R.; Garcia, A. E. J. Am. Chem. Soc. 2006, 128, 2158.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 2158
-
-
Gnanakaran, S.1
Nussinov, R.2
Garcia, A.E.3
-
40
-
-
34249930405
-
-
Scheraga, H. A.; Khalili, M.; Liwo, A. Annu. Rev. Phys. Chem. 2007, 58, 57.
-
(2007)
Annu. Rev. Phys. Chem
, vol.58
, pp. 57
-
-
Scheraga, H.A.1
Khalili, M.2
Liwo, A.3
-
42
-
-
29144432368
-
-
Schug, A.; Herges, T.; Verma, A.; Lee, K. H.; Wenzel, W. ChemPhysChem 2005, 6, 2640.
-
(2005)
ChemPhysChem
, vol.6
, pp. 2640
-
-
Schug, A.1
Herges, T.2
Verma, A.3
Lee, K.H.4
Wenzel, W.5
-
45
-
-
2242465042
-
Insights into specific problems in protein folding using simple concepts
-
John Wiley and Sons: New York
-
Thirumalai, D.; Klimov, D. K.; Dima, R. I. Insights into specific problems in protein folding using simple concepts. Computational Methods for Protein Folding Advances in Chemical Physics; John Wiley and Sons: New York, 2002; Vol. 120, pp 35-76.
-
(2002)
Computational Methods for Protein Folding Advances in Chemical Physics
, vol.120
, pp. 35-76
-
-
Thirumalai, D.1
Klimov, D.K.2
Dima, R.I.3
-
46
-
-
84906387570
-
-
Oliveira, L. C.; Silva, R. T. H.; Leite, V. B. P.; Chahine, J. J. Chem. Phys. 2006, 125.
-
(2006)
J. Chem. Phys
, vol.125
-
-
Oliveira, L.C.1
Silva, R.T.H.2
Leite, V.B.P.3
Chahine, J.4
-
47
-
-
0029081216
-
-
Vieth, M.; Kolinski, A.; Brooks, C. L.; Skolnick, J. J. Mol. Biol. 1995, 251, 448.
-
(1995)
J. Mol. Biol
, vol.251
, pp. 448
-
-
Vieth, M.1
Kolinski, A.2
Brooks, C.L.3
Skolnick, J.4
-
49
-
-
1342281633
-
-
Kubelka, J.; Hofrichter, J.; Eaton, W. A. Curr. Opin. Struct. Biol. 2004, 14, 76.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 76
-
-
Kubelka, J.1
Hofrichter, J.2
Eaton, W.A.3
-
50
-
-
0037154268
-
-
Cheung, M. S.; Garcia, A. E.; Onuchic, J. N. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 685.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 685
-
-
Cheung, M.S.1
Garcia, A.E.2
Onuchic, J.N.3
-
51
-
-
0035917318
-
-
Shimada, J.; Kussell, E. L.; Shakhnovich, E. I. J. Mol. Biol. 2001, 308, 79.
-
(2001)
J. Mol. Biol
, vol.308
, pp. 79
-
-
Shimada, J.1
Kussell, E.L.2
Shakhnovich, E.I.3
-
53
-
-
13044272912
-
-
Sobolev, V.; Sorokine, A.; Prilusky, J.; Abola, E. E.; Edelman, M. Bioinformatics 1999, 15, 327.
-
(1999)
Bioinformatics
, vol.15
, pp. 327
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
55
-
-
31444452031
-
-
Cho, S. S.; Levy, Y.; Wolynes, P. G. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 586.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 586
-
-
Cho, S.S.1
Levy, Y.2
Wolynes, P.G.3
-
56
-
-
13444301037
-
-
Levy, Y.; Cho, S. S.; Onuchic, J. N.; Wolynes, P. G. J. Mol. Biol. 2005, 346, 1121.
-
(2005)
J. Mol. Biol
, vol.346
, pp. 1121
-
-
Levy, Y.1
Cho, S.S.2
Onuchic, J.N.3
Wolynes, P.G.4
-
57
-
-
0030322669
-
-
Onuchic, J. N.; Socci, N. D.; LutheySchulten, Z.; Wolynes, P. G. Folding Des. 1996, 1, 441.
-
(1996)
Folding Des
, vol.1
, pp. 441
-
-
Onuchic, J.N.1
Socci, N.D.2
LutheySchulten, Z.3
Wolynes, P.G.4
-
58
-
-
0033515615
-
-
Shoemaker, B. A.; Wang, J.; Wolynes, P. G. J. Mol. Biol. 1999, 287, 675.
-
(1999)
J. Mol. Biol
, vol.287
, pp. 675
-
-
Shoemaker, B.A.1
Wang, J.2
Wolynes, P.G.3
-
60
-
-
0028078725
-
-
Harpaz, Y.; Elmasry, N.; Fersht, A. R.; Henrick, K. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 311.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A
, vol.91
, pp. 311
-
-
Harpaz, Y.1
Elmasry, N.2
Fersht, A.R.3
Henrick, K.4
|