메뉴 건너뛰기




Volumn 289, Issue 1, 1999, Pages 167-174

Effects of varying the local propensity to form secondary structure on the stability and folding kinetics of a rapid folding mixed α/β protein: Characterization of a truncation mutant of the N-terminal domain of the ribosomal protein L9

Author keywords

Protein folding; Ribosomal protein L9; Two state kinetics; helix

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; RIBOSOME PROTEIN;

EID: 0033612227     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.2742     Document Type: Article
Times cited : (31)

References (30)
  • 1
    • 0029155772 scopus 로고
    • Impact of local and non-local interactions on thermodynamics and kinetics of protein folding
    • Abkevich V. I., Gutin A. M., Shaknovich E. I. Impact of local and non-local interactions on thermodynamics and kinetics of protein folding. J. Mol. Biol. 252:1995;460-471.
    • (1995) J. Mol. Biol. , vol.252 , pp. 460-471
    • Abkevich, V.I.1    Gutin, A.M.2    Shaknovich, E.I.3
  • 2
    • 0015361994 scopus 로고
    • The formation and stabilization of protein structure
    • Anfinsen C. B. The formation and stabilization of protein structure. Biochem. J. 128:1972;737-749.
    • (1972) Biochem. J. , vol.128 , pp. 737-749
    • Anfinsen, C.B.1
  • 3
    • 5144233105 scopus 로고
    • MLEV-17 based two dimensional homonuclear magnetisation transfer spectroscopy
    • Bax A., Davis D. G. MLEV-17 based two dimensional homonuclear magnetisation transfer spectroscopy. J. Magn. Reson. 65:1985;355-360.
    • (1985) J. Magn. Reson. , vol.65 , pp. 355-360
    • Bax, A.1    Davis, D.G.2
  • 6
    • 0026743136 scopus 로고
    • Folding of peptide fragments comprising the complete sequence of proteins: Models for initiation of protein folding II. Plastocyanin
    • Dyson H. J., Sayre J. R., Mertuka G., Shin H.-C., Lerner R. A., Wright P. E. Folding of peptide fragments comprising the complete sequence of proteins: models for initiation of protein folding II. Plastocyanin. J. Mol. Biol. 226:1992;819-835.
    • (1992) J. Mol. Biol. , vol.226 , pp. 819-835
    • Dyson, H.J.1    Sayre, J.R.2    Mertuka, G.3    Shin, H.-C.4    Lerner, R.A.5    Wright, P.E.6
  • 7
    • 0028856785 scopus 로고
    • Optimization of rates of protein folding: The nucleation-condensed mechanism and its implications
    • Fersht A. R. Optimization of rates of protein folding: the nucleation-condensed mechanism and its implications. Proc. Natl Acad. Sci. USA. 92:1995;10869-10873.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 10869-10873
    • Fersht, A.R.1
  • 8
    • 0029784407 scopus 로고    scopus 로고
    • Initiation sites of protein folding by NMR analysis
    • Freund S. M. V., Wong K., Fersht A. R. Initiation sites of protein folding by NMR analysis. Proc. Natl Acad. Sci. USA. 93:1996;10600-10603.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 10600-10603
    • Freund, S.M.V.1    Wong, K.2    Fersht, A.R.3
  • 9
    • 0024448151 scopus 로고
    • Calculation of protein extinction coefficients from amino acid sequence data
    • Gill S. C., von Hippel P. H. Calculation of protein extinction coefficients from amino acid sequence data. Anal. Biochem. 182:1989;319-326.
    • (1989) Anal. Biochem. , vol.182 , pp. 319-326
    • Gill, S.C.1    Von Hippel, P.H.2
  • 12
    • 0030596154 scopus 로고    scopus 로고
    • Ribosomal protein L9: A structure determination by the combined use of X-ray crystallography and NMR spectroscopy
    • Hoffman D. W., Cameron C. S., Davies C., White S., Ramakrishnan V. Ribosomal protein L9: a structure determination by the combined use of X-ray crystallography and NMR spectroscopy. J. Mol. Biol. 264:1996;1058-1071.
    • (1996) J. Mol. Biol. , vol.264 , pp. 1058-1071
    • Hoffman, D.W.1    Cameron, C.S.2    Davies, C.3    White, S.4    Ramakrishnan, V.5
  • 13
    • 0028848469 scopus 로고
    • Search for nucleation sites in smaller fragments of chymotrypsin inhibitor 2
    • Itzhaki L. S., Neira J. L., Ruiz-Sanz J., de Prat Gay G., Fersht A. R. Search for nucleation sites in smaller fragments of chymotrypsin inhibitor 2. J. Mol. Biol. 254:1995a;289-304.
    • (1995) J. Mol. Biol. , vol.254 , pp. 289-304
    • Itzhaki, L.S.1    Neira, J.L.2    Ruiz-Sanz, J.3    De Prat, G.G.4    Fersht, A.R.5
  • 14
    • 0028868995 scopus 로고
    • The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: Evidence for a nucleation-condensation mechanism for protein folding
    • Itzhaki L. S., Otzen D. E., Fersht A. R. The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding. J. Mol. Biol. 254:1995b;260-288.
    • (1995) J. Mol. Biol. , vol.254 , pp. 260-288
    • Itzhaki, L.S.1    Otzen, D.E.2    Fersht, A.R.3
  • 15
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structure
    • Kraulis P. J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structure. J. Appl. Crystallog. 24:1991;946-950.
    • (1991) J. Appl. Crystallog. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 16
    • 0031765187 scopus 로고    scopus 로고
    • p, and evaluation of solvent isotope effects
    • p, and evaluation of solvent isotope effects. Protein Sci. 7:1998;1-8.
    • (1998) Protein Sci. , vol.7 , pp. 1-8
    • Kuhlman, B.1    Raleigh, D.P.2
  • 17
    • 0032570265 scopus 로고    scopus 로고
    • Structure and stability of the N-terminal domain of the ribosomal protein L9: Evidence for the rapid two-state folding
    • Kuhlman B., Boice J. A., Fairman R., Raleigh D. P. Structure and stability of the N-terminal domain of the ribosomal protein L9: evidence for the rapid two-state folding. Biochemistry. 37:1998a;1025-1032.
    • (1998) Biochemistry , vol.37 , pp. 1025-1032
    • Kuhlman, B.1    Boice, J.A.2    Fairman, R.3    Raleigh, D.P.4
  • 18
    • 0032545150 scopus 로고    scopus 로고
    • Global analysis of effects of temperature and denaturant on the folding and unfolding kinetics of the N-terminal domain of the protein L9
    • Kuhlman B., Luisi D. L., Evans P. A., Raleigh D. P. Global analysis of effects of temperature and denaturant on the folding and unfolding kinetics of the N-terminal domain of the protein L9. J. Mol. Biol. 284:1998b;1661-1670.
    • (1998) J. Mol. Biol. , vol.284 , pp. 1661-1670
    • Kuhlman, B.1    Luisi, D.L.2    Evans, P.A.3    Raleigh, D.P.4
  • 19
    • 0019327003 scopus 로고
    • A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for elucidation of complete proton-proton cross relaxation networks in biological macromolecules
    • Kumar A., Ernst R. R., Wütrich K. A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for elucidation of complete proton-proton cross relaxation networks in biological macromolecules. Biochem. Biophys. Res. Commun. 95:1980;1-6.
    • (1980) Biochem. Biophys. Res. Commun. , vol.95 , pp. 1-6
    • Kumar, A.1    Ernst, R.R.2    Wütrich, K.3
  • 20
    • 0031588693 scopus 로고    scopus 로고
    • Folding kinetics of Che Y mutants with enhanced native α-helix propensities
    • Lopez-Hernandez E., Cronet P., Serrano L., Munoz V. Folding kinetics of Che Y mutants with enhanced native α-helix propensities. J. Mol. Biol. 266:1997;610-620.
    • (1997) J. Mol. Biol. , vol.266 , pp. 610-620
    • Lopez-Hernandez, E.1    Cronet, P.2    Serrano, L.3    Munoz, V.4
  • 21
    • 0033605920 scopus 로고    scopus 로고
    • Conformational analysis of a set of peptides corresponding to the entire primary sequence of the N-terminal domain of the ribosomal protein L9: Evidence for stable native-like secondary structure in the unfolded state
    • Luisi D. L., Wu W-J., Raleigh D. P. Conformational analysis of a set of peptides corresponding to the entire primary sequence of the N-terminal domain of the ribosomal protein L9: evidence for stable native-like secondary structure in the unfolded state. J. Mol. Biol. 287:1999;395-407.
    • (1999) J. Mol. Biol. , vol.287 , pp. 395-407
    • Luisi, D.L.1    Wu, W.-J.2    Raleigh, D.P.3
  • 24
    • 0030874298 scopus 로고    scopus 로고
    • Comparison of NH exchange and circular dichroism as techniques for measuring the parameters of the helix-coil transition in peptides
    • Rohl C. A., Baldwin R. L. Comparison of NH exchange and circular dichroism as techniques for measuring the parameters of the helix-coil transition in peptides. Biochemistry. 36:1997;8435-8442.
    • (1997) Biochemistry , vol.36 , pp. 8435-8442
    • Rohl, C.A.1    Baldwin, R.L.2
  • 27
    • 0014718113 scopus 로고
    • Protein denaturation. Part C. Theoretical models for the mechanism of denaturation
    • Tanford C. Protein denaturation. Part C. Theoretical models for the mechanism of denaturation. Advan. Protein Chem. 24:1970;1-95.
    • (1970) Advan. Protein Chem. , vol.24 , pp. 1-95
    • Tanford, C.1
  • 28
    • 0030604696 scopus 로고    scopus 로고
    • Local interactions dominate folding in a simple model of protein folding kinetics
    • Unger R., Moult J. Local interactions dominate folding in a simple model of protein folding kinetics. J. Mol. Biol. 259:1996;988-994.
    • (1996) J. Mol. Biol. , vol.259 , pp. 988-994
    • Unger, R.1    Moult, J.2
  • 29
    • 0030623698 scopus 로고    scopus 로고
    • Favourable native-like helical local interactions can accelerate protein folding
    • Viguera A. R., Villegas V., Aviles F. X., Serrano L. Favourable native-like helical local interactions can accelerate protein folding. Fold. Des. 2:1996;23-33.
    • (1996) Fold. Des. , vol.2 , pp. 23-33
    • Viguera, A.R.1    Villegas, V.2    Aviles, F.X.3    Serrano, L.4
  • 30
    • 0024293204 scopus 로고
    • Conformation of peptide fragments of proteins in aqueous solution: Implications for initiation of protein folding
    • Wright P. E., Dyson H. J., Lerner R. A. Conformation of peptide fragments of proteins in aqueous solution: implications for initiation of protein folding. Biochemistry. 27:1988;7167-7175.
    • (1988) Biochemistry , vol.27 , pp. 7167-7175
    • Wright, P.E.1    Dyson, H.J.2    Lerner, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.