Ultrafast excited-state dynamics of RNA and DNA C tracts

Chemical Physics

Volumn 350, Issue 1-3, 2008, Pages 165-174

  Cohen, Boiko ^a   Larson, Matthew H ^a   Kohler, Bern ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

C tracts; DNA electronic structure; DNA photophysics; i motif DNA

Indexed keywords

EID: 44749083584     PISSN: 03010104     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemphys.2008.01.050     Document Type: Article

References (67)

1. Callis P.R. Ann. Rev. Phys. Chem. 34 (1983) 329
2. Crespo-Hernández C.E., Cohen B., Hare P.M., and Kohler B. Chem. Rev. 104 (2004) 1977
3. Pecourt J.-M.L., Peon J., and Kohler B. J. Am. Chem. Soc. 123 (2001) 10370
4. Peon J., and Zewail A.H. Chem. Phys. Lett. 348 (2001) 255
5. Onidas D., Markovitsi D., Marguet S., Sharonov A., and Gustavsson T. J. Phys. Chem. B 106 (2002) 11367
6. Markovitsi D., Sharonov A., Onidas D., and Gustavsson T. Chem. Phys. Chem. 4 (2003) 303
7. Crespo-Hernández C.E., Cohen B., and Kohler B. Nature 436 (2005) 1141
8. Kwok W.-M., Ma C., and Phillips D.L. J. Am. Chem. Soc. 128 (2006) 11894
9. Buchvarov I., Wang Q., Raytchev M., Trifonov A., and Fiebig T. Proc. Natl. Acad. Sci. USA 104 (2007) 4794
10. Schreier W.J., Schrader T.E., Koller F.O., Gilch P., Crespo-Hernández C.E., Swaminathan V.N., Carell T., Zinth W., and Kohler B. Science 315 (2007) 625
11. Sobolewski A.L., and Domcke W. Eur. Phys. J.D. 20 (2002) 369
12. Ismail N., Blancafort L., Olivucci M., Kohler B., and Robb M.A. J. Am. Chem. Soc. 124 (2002) 6818
13. Matsika S. J. Phys. Chem. A. 108 (2004) 7584
14. Blancafort L. J. Am. Chem. Soc. 128 (2006) 210
15. Serrano-Andrés L., Merchán M., and Borin A.C. Proc. Natl. Acad. Sci. USA 103 (2006) 8691
16. Cohen B., Crespo-Hernández C.E., Hare P.M., and Kohler B. In: Martin M.M., and Hynes J.T. (Eds). Femtochemistry and Femtobiology: Ultrafast Events in Molecular Science (2004), Elsevier Science, Amsterdam 463
17. Ballini J.P., Vigny P., and Daniels M. Biophys. Chem. 18 (1983) 61
18. Ballini J.P., Daniels M., and Vigny P. Biophys. Chem. 39 (1991) 253
19. Plessow R., Brockhinke A., Eimer W., and Kohse-Höinghaus K. J. Phys. Chem. B 104 (2000) 3695
20. Crespo-Hernández C.E., and Kohler B. J. Phys. Chem. B 108 (2004) 11182
21. Markovitsi D., Talbot F., Gustavsson T., Onidas D., Lazzarotto E., and Marguet S. Nature 441 (2006) E7
22. Schultz T., Samoylova E., Radloff W., Hertel I.V., Sobolewski A.L., and Domcke W. Science 306 (2004) 1765
23. Abo-Riziq A., Grace L., Nir E., Kabelac M., Hobza P., and de Vries M.S. Proc. Natl. Acad. Sci. USA 102 (2005) 20
24. Schwalb N.K., and Temps F. J. Am. Chem. Soc. 129 (2007) 9272
25. Langridge R., and Rich A. Nature 198 (1963) 725
26. Akinrimisi E.O., Sander C., and Ts'o P.O.P. Biochemistry 2 (1963) 340
27. Gehring K., Leroy J.L., and Guéron M. Nature 363 (1993) 561
28. Guéron M., and Leroy J.-L. Curr. Opin. Struct. Biol. 10 (2000) 326
29. Mills M., Lacroix L., Arimondo P.B., Leroy J.-L., Francois J.-C., Klump H., and Mergny J.-L. Curr. Med. Chem.: Anti-Cancer Agents 2 (2002) 627
30. Volker J., Klump H.H., and Breslauer K.J. Biopolymers 86 (2007) 136
31. Kaushik M., Suehl N., and Marky L.A. Biophys. Chem. 126 (2007) 154
32. Favre A. FEBS Lett. 22 (1972) 280
33. Vigny P., and Favre A. Photochem. Photobiol. 20 (1974) 345
34. Buterbaugh J.S., Toscano J.P., Weaver W.L., Gord J.R., Hadad C.M., Gustafson T.L., and Platz M.S. J. Am. Chem. Soc. 119 (1997) 3580
35. Inman R.B. J. Mol. Biol. 9 (1964) 624
36. Antao V.P., and Gray D.M. J. Biomol. Struct. Dyn. 10 (1993) 819
37. Malone R.J., Miller A.M., and Kohler B. Photochem. Photobiol. 77 (2003) 158
38. Hare P.M., Crespo-Hernández C.E., and Kohler B. Proc. Natl. Acad. Sci. USA 104 (2007) 435
39. Arnott S., Chandrasekaran R., and Leslie A.G.W. J. Mol. Biol. 106 (1976) 735
40. Broido M.S., and Kearns D.R. J. Am. Chem. Soc. 104 (1982) 5207
41. Bell A.F., Hecht L., and Barron L.D. J. Am. Chem. Soc. 119 (1997) 6006
42. Christensen J.J., Rytting J.H., and Izatt R.M. J. Phys. Chem. 71 (1967) 2700
43. Guschlbauer W. Proc. Natl. Acad. Sci. USA 57 (1967) 1441
44. Sobolewski A.L., Domcke W., and Hattig C. Proc. Natl. Acad. Sci. USA 102 (2005) 17903
45. Morgan J.P., and Daniels M. Photochem. Photobiol. 31 (1980) 207
46. Montenay-Garestier T., and Hélène C. Biochemistry 9 (1970) 2865
47. Sharonov A., Gustavsson T., Carré V., Renault E., and Markovitsi D. Chem. Phys. Lett. 380 (2003) 173
48. Gustavsson T., Banyasz A., Lazzarotto E., Markovitsi D., Scalmani G., Frisch M.J., Barone V., and Improta R. J. Am. Chem. Soc. 128 (2006) 607
49. Hare P.M., Crespo-Hernández C.E., and Kohler B. J. Phys. Chem. B 110 (2006) 18641
50. Leroy J.L., Gehring K., Kettani A., and Guéron M. Biochemistry 32 (1993) 6019
51. Chen L., Cai L., Zhang X., and Rich A. Biochemistry 33 (1994) 13540
52. Kang C., Berger I., Lockshin C., Ratliff R., Moyzis R., and Rich A. Proc. Natl. Acad. Sci. USA 91 (1994) 11636
53. Lacroix L., Mergny J.L., Leroy J.L., and Hélène C. Biochemistry 35 (1996) 8715
54. Snoussi K., Nonin-Lecomte S., and Leroy J.L. J. Mol. Biol. 309 (2001) 139
55. Collin D., and Gehring K. J. Am. Chem. Soc. 120 (1998) 4069
56. Petrovic A.G., and Polavarapu P.L. J. Phys. Chem. B 110 (2006) 22826
57. Rush III T., Yong H., and Peticolas W.L. Biopolymers 41 (1997) 121
58. Thiele D., Guschlbauer W., and Favre A. Biochim. Biophys. Acta, Nucl. Acids Protein Synth. 272 (1972) 22
59. Egli M., Lubini P., Bolli M., Dobler M., and Leumann C. J. Am. Chem. Soc. 115 (1993) 5855
60. Voet D., Gratzer W.B., Cox R.A., and Doty P. Biopolymers 1 (1963) 193
61. Bouvier B., Dognon J.-P., Lavery R., Markovitsi D., Millié P., Onidas D., and Zakrzewska K. J. Phys. Chem. B 107 (2003) 13512
62. Emanuele E., Zakrzewska K., Markovitsi D., Lavery R., and Millié P. J. Phys. Chem. B 109 (2005) 16109
63. Bittner E.R. J. Chem. Phys. 125 (2006) 094909/1
64. Santoro F., Barone V., and Improta R. Proc. Natl. Acad. Sci. USA 104 (2007) 9931
65. Danilov V.I., Slyusarchuk O.N., Alderfer J.L., Stewart J.J.P., and Callis P.R. Photochem. Photobiol. 59 (1994) 125
66. Olaso-González G., Roca-Sanjuán D., Serrano-Andrés L., and Merchán M. J. Chem. Phys. 125 (2006) 231102
67. Pettersen E.F., Goddard T.D., Huang C.C., Couch G.S., Greenblatt D.M., Meng E.C., and Ferrin T.E. J. Comput. Chem. 25 (2004) 1605