메뉴 건너뛰기




Volumn 126, Issue 1-3, 2007, Pages 154-164

Calorimetric unfolding of the bimolecular and i-motif complexes of the human telomere complementary strand, d(C3TA2)4

Author keywords

DSC; i Motif DNA; Proton counterion water binding; Thermodynamics

Indexed keywords

CYTOSINE; PROTON; WATER;

EID: 33846622891     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bpc.2006.05.031     Document Type: Article
Times cited : (73)

References (45)
  • 1
    • 0023796273 scopus 로고
    • The chemistry and biology of unusual DNA structures adopted by oligopurine·oligopyrimidine sequences
    • Wells R.D., Collier D.A., Hanvey J.C., Shimizu M., and Wohlrab F. The chemistry and biology of unusual DNA structures adopted by oligopurine·oligopyrimidine sequences. FASEB J. 2 (1988) 2939-2949
    • (1988) FASEB J. , vol.2 , pp. 2939-2949
    • Wells, R.D.1    Collier, D.A.2    Hanvey, J.C.3    Shimizu, M.4    Wohlrab, F.5
  • 2
    • 0001404315 scopus 로고
    • Molecular structure of helical polycytidylic acid
    • Langridge R., and Rich A. Molecular structure of helical polycytidylic acid. Nature 198 (1963) 725-728
    • (1963) Nature , vol.198 , pp. 725-728
    • Langridge, R.1    Rich, A.2
  • 4
    • 33947473281 scopus 로고
    • Properties of helical polycytidylic acid
    • Akinrimisi E.O., Sander C., and Ts'o O. Properties of helical polycytidylic acid. Biochemistry 2 (1963) 340-344
    • (1963) Biochemistry , vol.2 , pp. 340-344
    • Akinrimisi, E.O.1    Sander, C.2    Ts'o, O.3
  • 5
    • 33846562342 scopus 로고
    • Multistranded DNA homopolymer interactions
    • Inman R.B. Multistranded DNA homopolymer interactions. J. Mol. Biol. 10 (1964) 137-146
    • (1964) J. Mol. Biol. , vol.10 , pp. 137-146
    • Inman, R.B.1
  • 6
    • 0027278767 scopus 로고
    • A tetrameric, DNA structure with protonated cytosine·cytosine base pairs
    • Gehring K., Leroy J.-L., and Fueron. A tetrameric, DNA structure with protonated cytosine·cytosine base pairs. Nature 363 (1993) 561-565
    • (1993) Nature , vol.363 , pp. 561-565
    • Gehring, K.1    Leroy, J.-L.2    Fueron3
  • 7
    • 0027159426 scopus 로고
    • Acid multimers of oligodeoxycytidine strands: stoichiometry, base-pair characterization, and proton exchange properties
    • Leroy J.-L., Gehring K., Kettani A., and Gueron. Acid multimers of oligodeoxycytidine strands: stoichiometry, base-pair characterization, and proton exchange properties. Biochemistry 32 (1993) 6019-6031
    • (1993) Biochemistry , vol.32 , pp. 6019-6031
    • Leroy, J.-L.1    Gehring, K.2    Kettani, A.3    Gueron4
  • 9
    • 0028364089 scopus 로고
    • Helene, intramolecular folding of a fragment of the cytosine-rich strand of telomeric DNA into an i-motif
    • Leroy J.-L., Gueron M., and Mergny J.-L. Helene, intramolecular folding of a fragment of the cytosine-rich strand of telomeric DNA into an i-motif. Nucleic Acids Res. 22 (1994) 1600-1606
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1600-1606
    • Leroy, J.-L.1    Gueron, M.2    Mergny, J.-L.3
  • 10
    • 0029643792 scopus 로고
    • Solution structures of the i-motif tetramers of d(TCC), d(5methylCCT) and d(T5methylCC): novel NOE connections between amino protons and sugar protons
    • Leroy J.-L., and Gueron M. Solution structures of the i-motif tetramers of d(TCC), d(5methylCCT) and d(T5methylCC): novel NOE connections between amino protons and sugar protons. Structure 3 (1995) 101-120
    • (1995) Structure , vol.3 , pp. 101-120
    • Leroy, J.-L.1    Gueron, M.2
  • 12
    • 0029001614 scopus 로고
    • Stable loop in the crystal structure of the intercalated four-stranded cytosine-rich metazoan telomere
    • Kang C., Berger I., Lockshin C., Ratliff R., and Moyzis R. Stable loop in the crystal structure of the intercalated four-stranded cytosine-rich metazoan telomere. Proc. Natl. Acad. Sci. U. S. A. 92 (1995) 3874-3878
    • (1995) Proc. Natl. Acad. Sci. U. S. A. , vol.92 , pp. 3874-3878
    • Kang, C.1    Berger, I.2    Lockshin, C.3    Ratliff, R.4    Moyzis, R.5
  • 13
    • 0029032852 scopus 로고
    • Extension of the four-stranded intercalated cytosine motif by adenine·adenine base pairing in the crystal structure of d(CCCAAT)
    • Berger I., Kang C., Fredian A., Ratliff R., Moyzis R., and Rich A. Extension of the four-stranded intercalated cytosine motif by adenine·adenine base pairing in the crystal structure of d(CCCAAT). Nat. Struct. Biol. 2 (1995) 416-425
    • (1995) Nat. Struct. Biol. , vol.2 , pp. 416-425
    • Berger, I.1    Kang, C.2    Fredian, A.3    Ratliff, R.4    Moyzis, R.5    Rich, A.6
  • 14
    • 0028124986 scopus 로고
    • Crystal structure of a four-stranded intercalated DNA: d(C4)
    • Chen L., Cai L., Zhang X., and Rich A. Crystal structure of a four-stranded intercalated DNA: d(C4). Biochemistry 22 (1994) 13540-13546
    • (1994) Biochemistry , vol.22 , pp. 13540-13546
    • Chen, L.1    Cai, L.2    Zhang, X.3    Rich, A.4
  • 16
    • 0032508468 scopus 로고    scopus 로고
    • Following G-quartet formation by UV-spectroscopy
    • Mergny J.-L. Following G-quartet formation by UV-spectroscopy. FEBS Lett. 435 (1998) 74-78
    • (1998) FEBS Lett. , vol.435 , pp. 74-78
    • Mergny, J.-L.1
  • 17
    • 0028028058 scopus 로고
    • Evidence for intramolecularly folded i-DNA structures in biologically relevant CCC-repeat sequences
    • Manzini G., Yathindra N., and Xodo L.F. Evidence for intramolecularly folded i-DNA structures in biologically relevant CCC-repeat sequences. Nucleic Acids Res. 22 (1994) 4634-4640
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4634-4640
    • Manzini, G.1    Yathindra, N.2    Xodo, L.F.3
  • 18
    • 0022444665 scopus 로고
    • Raman spectra of single crystals of r(GCG)d(CGC) and d(CCCCGGGG) as models for A DNA, their structure transitions in aqueous solution, and comparison with double-helical poly(dG).poly(dC)
    • Benevides J.M., Wang A.H.-J., Rich A., Kyogoku Y., Vander Marel G.A., Van Boom J.H., and Thomas Jr. G.J. Raman spectra of single crystals of r(GCG)d(CGC) and d(CCCCGGGG) as models for A DNA, their structure transitions in aqueous solution, and comparison with double-helical poly(dG).poly(dC). Biochemistry 25 (1986) 41-50
    • (1986) Biochemistry , vol.25 , pp. 41-50
    • Benevides, J.M.1    Wang, A.H.-J.2    Rich, A.3    Kyogoku, Y.4    Vander Marel, G.A.5    Van Boom, J.H.6    Thomas Jr., G.J.7
  • 19
  • 20
    • 0025942240 scopus 로고
    • Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex stability
    • Mergny J.-L., Sun J.S., Rougee M., Montenay-Garestier T., Barcelo F., Chomilier J., and Helene C. Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex stability. Biochemistry 30 (1991) 9791-9798
    • (1991) Biochemistry , vol.30 , pp. 9791-9798
    • Mergny, J.-L.1    Sun, J.S.2    Rougee, M.3    Montenay-Garestier, T.4    Barcelo, F.5    Chomilier, J.6    Helene, C.7
  • 21
    • 0029956118 scopus 로고    scopus 로고
    • Inability of RNA to form the i-motif: implications for triplex formation
    • Lacroix L., Mergny J.-L., Leroy J.-L., and Helene C. Inability of RNA to form the i-motif: implications for triplex formation. Biochemistry 35 (1996) 8715-8722
    • (1996) Biochemistry , vol.35 , pp. 8715-8722
    • Lacroix, L.1    Mergny, J.-L.2    Leroy, J.-L.3    Helene, C.4
  • 23
    • 0014725117 scopus 로고
    • Oligonucleotide interactions: III. Circular dichroism studies of the conformation of deoxyoligonucleotides
    • Cantor C.R., Warshow M.M., and Shapiro H. Oligonucleotide interactions: III. Circular dichroism studies of the conformation of deoxyoligonucleotides. Bioploymers 9 (1970) 1059-1077
    • (1970) Bioploymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshow, M.M.2    Shapiro, H.3
  • 24
    • 0020579962 scopus 로고
    • Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCGAATTCGCG): evidence for hairpin formation
    • Marky L.A., Blumenfeld K.S., Kozlowski S., and Breslauer K.J. Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCGAATTCGCG): evidence for hairpin formation. Biopolymers 22 (1983) 1247-1257
    • (1983) Biopolymers , vol.22 , pp. 1247-1257
    • Marky, L.A.1    Blumenfeld, K.S.2    Kozlowski, S.3    Breslauer, K.J.4
  • 25
    • 0023406843 scopus 로고
    • Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves
    • Marky L.A., and Breslauer K.J. Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves. Biopolymers 26 (1987) 1601-1620
    • (1987) Biopolymers , vol.26 , pp. 1601-1620
    • Marky, L.A.1    Breslauer, K.J.2
  • 26
    • 33947299838 scopus 로고
    • Volume changes for ionization of formic, acetic and n-butyric acids on the glycimiun ion in aqueous solutions at 25 °C
    • Kings E.J. Volume changes for ionization of formic, acetic and n-butyric acids on the glycimiun ion in aqueous solutions at 25 °C. J. Phys. Chem. 73 (1969) 1220-1232
    • (1969) J. Phys. Chem. , vol.73 , pp. 1220-1232
    • Kings, E.J.1
  • 28
    • 0025896047 scopus 로고
    • Differential hydration of dA · dT base pairing and dA and dT bulges in deoxyoligonucleotides
    • Zieba K., Chu T.M., Kupke D.W., and Marky L.A. Differential hydration of dA · dT base pairing and dA and dT bulges in deoxyoligonucleotides. Biochemistry 30 (1991) 8018-8026
    • (1991) Biochemistry , vol.30 , pp. 8018-8026
    • Zieba, K.1    Chu, T.M.2    Kupke, D.W.3    Marky, L.A.4
  • 29
    • 0033524401 scopus 로고    scopus 로고
    • Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA
    • Spink C.H., and Chaires J.B. Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA. Biochemistry 38 (1999) 496-508
    • (1999) Biochemistry , vol.38 , pp. 496-508
    • Spink, C.H.1    Chaires, J.B.2
  • 30
    • 0029867430 scopus 로고    scopus 로고
    • The water effect on allosteric regulation of hemoglobin probed in water/glucose and water/glycine solutions
    • Colombo M.F., and Bonilla-Rodriguez G.O. The water effect on allosteric regulation of hemoglobin probed in water/glucose and water/glycine solutions. J. Biol. Chem. 271 (1996) 4895-4899
    • (1996) J. Biol. Chem. , vol.271 , pp. 4895-4899
    • Colombo, M.F.1    Bonilla-Rodriguez, G.O.2
  • 31
    • 11944258611 scopus 로고
    • Intramolecular folding of pyrimidine oligodeoxynucleotides into an i-DNA Motif
    • Mergny J.-L., Lacroix L., Han X., Leroy J.-L., and Helene C. Intramolecular folding of pyrimidine oligodeoxynucleotides into an i-DNA Motif. J. Am. Chem. Soc. 117 (1995) 8887-8898
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 8887-8898
    • Mergny, J.-L.1    Lacroix, L.2    Han, X.3    Leroy, J.-L.4    Helene, C.5
  • 33
    • 0031036571 scopus 로고    scopus 로고
    • Spectroscopic evidence for the formation of four-stranded solution structure of oligodeoxycytidine phosphorothioate
    • Kanehara H., Mizuguchi M., Tajima K., Kanaori K., and Makino K. Spectroscopic evidence for the formation of four-stranded solution structure of oligodeoxycytidine phosphorothioate. Biochemistry 36 (1997) 1790-1797
    • (1997) Biochemistry , vol.36 , pp. 1790-1797
    • Kanehara, H.1    Mizuguchi, M.2    Tajima, K.3    Kanaori, K.4    Makino, K.5
  • 34
    • 0016288602 scopus 로고
    • A circular dichroism study of poly dG, poly dC, and poly dG:dC
    • Gray D.M., and Bollum F.J. A circular dichroism study of poly dG, poly dC, and poly dG:dC. Biopolymers 13 (1974) 2087-2102
    • (1974) Biopolymers , vol.13 , pp. 2087-2102
    • Gray, D.M.1    Bollum, F.J.2
  • 35
    • 0017814514 scopus 로고
    • Protonated polynucleotides structures: 22. CD study of the acid-base titration of poly(dG).poly(dC)
    • Marck C., Thiele D., Schneider C., and Guschlbauer W. Protonated polynucleotides structures: 22. CD study of the acid-base titration of poly(dG).poly(dC). Nucleic Acids Res. 5 (1978) 1979-1996
    • (1978) Nucleic Acids Res. , vol.5 , pp. 1979-1996
    • Marck, C.1    Thiele, D.2    Schneider, C.3    Guschlbauer, W.4
  • 36
    • 0026489996 scopus 로고
    • Unusual DNA conformation at low pH revealed by NMR: parallel-stranded DNA duplex with homo base pairs
    • Robinson H., van der Marel G.A., Van Boom J.H., and Wang A.H. Unusual DNA conformation at low pH revealed by NMR: parallel-stranded DNA duplex with homo base pairs. Biochemistry 31 (1992) 10510-10517
    • (1992) Biochemistry , vol.31 , pp. 10510-10517
    • Robinson, H.1    van der Marel, G.A.2    Van Boom, J.H.3    Wang, A.H.4
  • 37
    • 0035253414 scopus 로고    scopus 로고
    • Multiple four-stranded conformations of human telomere sequence d(CCCTAA) in solution
    • Kananori K., Shibayama N., Gohda K., Tajima K., and Makino K. Multiple four-stranded conformations of human telomere sequence d(CCCTAA) in solution. Nucleic Acids Res. 29 (2001) 831-840
    • (2001) Nucleic Acids Res. , vol.29 , pp. 831-840
    • Kananori, K.1    Shibayama, N.2    Gohda, K.3    Tajima, K.4    Makino, K.5
  • 40
    • 0037108277 scopus 로고    scopus 로고
    • +GC base-triplet stacks of DNA triplexes
    • +GC base-triplet stacks of DNA triplexes. Biochemistry 41 (2002) 12475-12482
    • (2002) Biochemistry , vol.41 , pp. 12475-12482
    • Soto, A.M.1    Marky, L.A.2
  • 41
    • 0037058905 scopus 로고    scopus 로고
    • Electrostatic free energy of the DNA double helix in counterion condensation theory
    • Manning G.S. Electrostatic free energy of the DNA double helix in counterion condensation theory. Biophys. Chemist. 101-102 (2002) 461-473
    • (2002) Biophys. Chemist. , vol.101-102 , pp. 461-473
    • Manning, G.S.1
  • 42
    • 0013994796 scopus 로고
    • Protonations in cytosine in DNA
    • Zimmer Ch., and Venner H. Protonations in cytosine in DNA. Biopolymers 4 (1966) 1073-1079
    • (1966) Biopolymers , vol.4 , pp. 1073-1079
    • Zimmer, Ch.1    Venner, H.2
  • 43
    • 0029805197 scopus 로고    scopus 로고
    • Evidence for a HeLa nuclear protein that binds specifically to the single-stranded d(CCCTAA)n telomeric motif
    • Marsich E., Piccini A., Xodo L.E., and Manzini G. Evidence for a HeLa nuclear protein that binds specifically to the single-stranded d(CCCTAA)n telomeric motif. Nucleic Acids Res. 24 (1996) 4029-4033
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4029-4033
    • Marsich, E.1    Piccini, A.2    Xodo, L.E.3    Manzini, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.