Genetic diversity among banana streak virus isolates from Australia

Phytopathology

Volumn 90, Issue 8, 2000, Pages 921-927

  Geering, A D W ^a   McMichael, L A ^a   Dietzgen, R G ^b   Thomas, J E ^a  

^a DEPARTMENT OF AGRICULTURE AND FISHERIES   (Australia)

^b UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Banana streak disease

Indexed keywords

AUSTRALIA; BANANA STREAK VIRUS; CLONE; CULTIVAR; DNA VIRUS; GENETIC DIVERSITY; NIGERIA; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; VIRUS GENOME;

MUSA;

EID: 0033861203     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO.2000.90.8.921     Document Type: Article

References (35)

1. Adomako, D., Lesemann, D.-E., and Paul, H. L. 1983. Improved methods for the purification and detection of cocoa swollen shoot virus. Ann. Appl. Biol. 103:109-116.
2. Ahlawat, Y. S., Pant, R. P., Lockhart, B. E. L., Srivastava, M., Chakraborty, N. K., and Varma, A. 1996. Association of a badnavirus with citrus mosaic disease in India. Plant Dis. 80:590-592.
3. Bouhida, M., Lockhart, B. E. L., and Olszewski, N. E. 1993. An analysis of the complete sequence of a sugarcane bacilliform virus genome infectious to banana and rice. J. Gen. Virol. 74:15-22.
4. Braithwaite, K., Geijskes, J., Geering, A., McMichael, L., Thomas, J., and Smith, G. 1997. Genetic variation in sugarcane bacilliform virus and banana streak virus in Australia. In: Abstr. Pathol. Mol. Biol. Workshop. International Society of Sugar Cane Technologists, Umhlanga Rocks, KwaZulu-Natal, South Africa.
5. Dahal, G., Gauhl, F., Pasberg-Gauhl, C., Hughes, J., d'A, Thottappilly, G., and Lockhart, B. E. L. 1999. Evaluation of micropropagated plantain and banana (Musa spp.) for banana streak badnavirus incidence under field and screenhouse conditions in Nigeria. Ann. Appl. Biol 134:181-191.
6. Daniells, J. W. 1986. Banana cultivars in Australia. Queensl. Agric. J. 112:75-76.
7. Doolittle, R. F., Feng, D. F., Johnson, M. S., and McClure, M. A. 1989. Origins and evolutionary relationships of retroviruses. Q. Rev. Biol. 64:1-30.
8. Fütterer, J., Rothnie, H. M., Hohn, T., and Potrykus, I. 1997. Rice tungro bacilliform virus open reading frames H and III are translated from polycistronic pregenomic RNA by leaky scanning. J. Virol. 71:7984-7989.
9. Gordon, D. 1996. The properties, diagnosis and control of sugarcane bacilliform virus (SCBV) and sugarcane mild mosaic virus (SCMMV) in Queensland. M.Sc. thesis. University of Queensland, Brisbane, Australia.
10. Harper, G., Dahal, G., Thottappilly, G., and Hull, R. 1999. Detection of episomal banana streak badnavirus by IC-PCR. J. Virol. Methods 79:1-8.
11. Harper, G., and Hull, R. 1998. Cloning and sequence analysis of banana streak virus DNA. Virus Genes 17:271-278.
12. Harper, G., Osuji, J., Heslop-Harrison, J. S., and Hull, R. 1999. Integration of banana streak badnavirus in to the Musa genome: Molecular and cytogenetic evidence. Virology 255:207-213.
13. Hataya, T., Inoue, A. K., and Shikata, E. 1994. A PCR-microplate hybridization method for plant virus detection. J. Virol. Methods 46:223-236.
14. Hohn, T., and Fütterer, J. 1997. The proteins and functions of plant pararetroviruses: Knowns and unknowns. Crit. Rev. Plant Sci. 16:133-161.
15. Hull, R., and Covey, S. N. 1996. Retroelements: Propagation and adaptation. Virus Genes 11:105-118.
16. Jacquot, E., Hagen, L. S., Jacquemond, M., and Yot, P. 1996. The open reading frame 2 product of cacao swollen shoot badnavirus is a nucleic acid-binding protein. Virology 225:191-195.
17. Joshi, C. P. 1987. Putative polyadenylation signals in nuclear genes of higher plants: A compilation and analysis. Nucleic Acids Res. 15:9627-9640.
18. Lassoudière, A. 1974. La mosaïque dite "à tirets" du bananier Poyo en Côte d'Ivoire. Fruits 29:349-357.
19. Lockhart, B. E. L. 1986. Purification and serology of a bacilliform virus associated with banana streak disease. Phytopathology 76:995-999.
20. Lockhart, B. E. 1995. Banana streak badnavirus infection in Musa: Epidemiology, diagnosis, and control. Food Fert. Tech. Bull. 143.
21. Lockhart, B. E. L., and Olszewski, N. E. 1993. Serological and genomic heterogeneity of banana streak badnavirus: Implications for virus detection in Musa germplasm. Pages 105-113 in: Breeding Banana and Plantain for Resistance to Diseases and Pests. J. Ganry, ed. International Network for the Improvement of Banana and Plantain, Montpellier, France.
22. Lot, H., Djiekpor, E., and Jacquemond, M. 1991. Characterization of the genome of cacao swollen shoot virus. J. Gen. Virol. 72:1735-1739.
23. McClure, M. A. 1995. Molecular evolution of the retroid family. Pages 404-415 in: Molecular Basis of Virus Evolution. A. J. Gibbs, C. H. Calisher, and F. García-Arenal, eds. Cambridge University Press, Cambridge.
24. Medberry, S. L., Lockhart, B. E. L., and Olszewski, N. E. 1990. Properties of Commelina yellow mottle virus's complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus. Nucleic Acids Res. 18:5505-5513.
25. Medberry, S. L., Lockhart, B. E. L., and Olszewski, N. E. 1992. The Commelina yellow mottle virus promoter is a strong promoter in vascular and reproductive tissues. Plant Cell 4:185-192.
26. Ndowora, T. R. C. 1998. Banana streak virus: Development of an immunoenzymatic assay for detection and characterization of sequences that are integrated in the genome of the host. Ph.D. dissertation. University of Minnesota, St. Paul.
27. Ndowora, T., Dahal, G., LaFleur, D., Harper, G., Hull, R., Olszewski, N. E., and Lockhart, B. 1999. Evidence that badnavirus infection in Musa can originate from integrated pararetroviral sequences. Virology 255:214-220.
28. Pearson, W. R., and Lipmann, D. J. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85:2444-2448.
29. Pringle, C. R. 1998. The universal system of virus taxonomy of the International Committee on Virus Taxonomy (ICTV), including new proposals ratified since publication of the Sixth ICTV Report in 1995. Arch. Virol. 143:203-210.
30. Rothnie, H. M., Chapdelaine, Y., and Hohn, T. 1994. Pararetroviruses and retroviruses: A comparative review of viral structure and gene expression strategies. Adv. Virus Res. 44:1-67.
31. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
32. Sharman, M., Thomas, J. E., and Dietzgen, R. G. 2000. Development of a multiplex immunocapture PCR with colorimetric detection for viruses of banana. J. Virol. Methods. (In press.)
33. Thomas, J. E. 1986. Purification and properties of ginger chlorotic fleck virus. Ann. Appl. Biol. 108:43-50.
34. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties, and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
35. Tzafrir, I., Torbert, K. A., Lockhart, B. E. L., Somers, D. A., and Olszewski, N. E. 1998. The sugarcane bacilliform badnavirus promoter is active in both monocots and dicots. Plant Mol. Biol. 38:347-356.