Sequence analysis of an Australian isolate of sugarcane bacilliform badnavirus

Archives of Virology

Volumn 147, Issue 12, 2002, Pages 2393-2404

  Geijskes, R Jason ^a   Braithwaite, K S ^a   Dale, J L ^b   Harding, R M ^b   Smith, G R ^a  

^a BSES LIMITED   (Australia)

^b QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; AUSTRALIA; BADNAVIRUS; CLONING, MOLECULAR; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; SACCHARUM; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VARIATION (GENETICS);

BADNAVIRUS; SACCHARUM HYBRID CULTIVAR; SUGARCANE BACILLIFORM VIRUS;

EID: 0036928642     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-002-0879-2     Document Type: Article

References (22)

1. Autrey LJC, Boolell S, Lockhart BEL, Jones P, Nadif A (1995) The distribution of sugarcane bacilliform virus in various geographical regions. In: Napompeth B, Wisarath P (eds) Proc XXI International Society of Sugarcane Technologists, Bangkok, 1992. Kasetsart University Press, Thailand, pp 527-541
2. Bouhida M, Lockhart BEL, Olszewski NE (1993) An analysis of the complete sequence of a sugarcane bacilliform virus genome infectious to banana and rice. J Gen Virol 74: 1-8
3. Braithwaite KS, Egeskov NM, Smith GR (1995) Detection of sugarcane bacilliform virus using the polymerase chain reaction. Plant Dis 79: 792-796
4. Braithwaite KS, Gambley CF, Smith GR (1996) Sequence variability in sugarcane bacilliform virus. In: Abstracts of the Xth International Congress of Virology, Jerusalem, p 130
5. Braithwaite KS, Geijskes JR, Geering ADW, Thomas JE, Smith GR (1997) Genetic variation in sugarcane bacilliform virus in Australia. In: Abstracts of the International Society of Sugarcane Technologists, Vth Pathology and IInd Molecular Biology Workshop, Umhlanga Rocks
6. Briddon RW, Phillips S, Brunt A, Hull R (1999) Analysis of the sequence of Dioscorea alata bacilliform virus; comparison to other members of the badnavirus group. Virus Genes 18: 277-283
7. Comstock JC, Lockhart BEL (1990) Widespread occurrence of sugarcane bacilliform virus in U.S. sugarcane germplasm collection. Plant Dis 74: 530
8. Comstock JC, Lockhart BEL (1996) Effect of sugarcane bacilliform virus on biomass production of three sugarcane cultivars. Sugarcane 4: 12-15
9. Geering ADW, McMichael LA, Dietzgen RG, Thomas JE (2000) Genetic diversity among banana streak virus isolates from Australia. Phytopathology 90: 921-927
10. Harper G, Hull R (1998) Cloning and sequence analysis of banana streak virus DNA. Virus Genes 17: 271-278
11. Lockhart BEL, Autrey LJC (1988) Occurrence in sugarcane of a bacilliform virus related serologically to banana streak virus. Plant Dis 72: 230-233
12. Lockhart BEL, Autrey LJC (1991) Mealy bug transmission of sugarcane bacilliform and sugarcane clostero-like viruses. In: Abstracts of the III International Society of Sugarcane Technologists Pathology Workshop, Mauritius, p 17
13. Lockhart BEL, Olszewski NE (1993) Serological and genomic heterogenicity of banana streak badnavirus: Implications for virus detection in Musa germplasm. In: Ganry J (ed) Proc International Symposium on Genetic Improvement of Bananas for Resistance to Diseases and Pests, Breeding Banana and Plantain for Resistance to Diseases and Pests, Montpellier. CIRAD, Montpellier, pp 105-113
14. Lockhart BEL, Irey MJ, Comstock JC (1995) Sugarcane bacilliform virus, sugarcane mild mosaic virus and sugarcane yellow leaf syndrome. In: Croft BJ, Piggin CM, Wallis ES, Hogarth DM (eds) Sugarcane Germplasm Conservation and Exchange: ACIAR Proc 67, Brisbane, pp 108-112
15. Medberry SL, Lockhart BEL, Olszewski NE (1990) Properties of Commelina yellow mottle virus's complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus. Nucleic Acids Res 18: 5505-5513
16. Ndowora T, Dahal G, LaFleur D, Harper G, Hull R, Olszewski NE, Lockhart BEL (1999) Evidence that badnavirus infection in Musa can originate from integrated pararetroviral sequences. Virology 255: 214-220
17. Page RDM (1996) Treeview: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358
18. Pearson WR, Lipman DJ (1988) Impoved tools for biological sequence comparison. Proc Natl Acad Sci 85: 2444-2448
19. Rodriguez-Lema E, Rodriguez D, Fernandez E, Acevedo R, Lopez D (1985) Reporte de un nuevo virus de la cana de azucar. Cien Agric 23: 130
20. Smith GR, Handley JA, Harding RM, Dale JL, Gambley CF, Braithwaite KS (1996) Variability in sugarcane bacilliform and mosaic viruses and consequences for diagnosis. In: Cock JH, Brekelbaum T (eds) Proc XXIII International Society of Sugarcane Technologists, Cartagena. Technica, Columbia, pp 390-396
21. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882
22. Viswanathan R, Alexander KC, Garg ID (1996) Detection of sugarcane bacilliform virus in sugarcane germplasm. Acta Virol 40: 5-8