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Volumn 87, Issue 3, 2004, Pages 1686-1696

Exterior site occupancy infers chloride-induced proton gating in a prokaryotic homolog of the ClC chloride channel

Author keywords

[No Author keywords available]

Indexed keywords

ANION; CHLORIDE; CHLORIDE CHANNEL; CHLORIDE ION; GLUTAMIC ACID;

EID: 4444366193     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.104.042465     Document Type: Article
Times cited : (44)

References (46)
  • 3
  • 4
    • 0030999097 scopus 로고    scopus 로고
    • Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature
    • Berger, O., O. Edholm, and F. Jahnig. 1997. Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature. Biophys. J. 72: 2002-2013.
    • (1997) Biophys. J. , vol.72 , pp. 2002-2013
    • Berger, O.1    Edholm, O.2    Jahnig, F.3
  • 7
    • 0037636309 scopus 로고    scopus 로고
    • The implementation of slab geometry for membrane-channel molecular dynamics simulations
    • Bostick, D., and M. L. Berkowitz. 2003. The implementation of slab geometry for membrane-channel molecular dynamics simulations. Biophys. J. 85:97-107.
    • (2003) Biophys. J. , vol.85 , pp. 97-107
    • Bostick, D.1    Berkowitz, M.L.2
  • 8
    • 0034940574 scopus 로고    scopus 로고
    • + of the muscle-type ClC chloride channels
    • + of the muscle-type ClC chloride channels. J. Gen. Physiol. 118:23-32.
    • (2001) J. Gen. Physiol. , vol.118 , pp. 23-32
    • Chen, M.-F.1    Chen, T.-Y.2
  • 9
    • 0042377364 scopus 로고    scopus 로고
    • Side-chain charge effects and conductance determinants in the pore of ClC-0 chloride channels
    • Chen, M.-F., and T.-Y. Chen. 2003. Side-chain charge effects and conductance determinants in the pore of ClC-0 chloride channels. J. Gen. Physiol. 122:133-145.
    • (2003) J. Gen. Physiol. , vol.122 , pp. 133-145
    • Chen, M.-F.1    Chen, T.-Y.2
  • 10
    • 0242415285 scopus 로고    scopus 로고
    • Electrostatic control and chloride regulation of the fast gating of ClC-0 chloride channels
    • Chen, T.-Y., M.-F. Chen, and C-W. Lin. 2003. Electrostatic control and chloride regulation of the fast gating of ClC-0 chloride channels. J. Gen. Physiol. 122:641-651.
    • (2003) J. Gen. Physiol. , vol.122 , pp. 641-651
    • Chen, T.-Y.1    Chen, M.-F.2    Lin, C.-W.3
  • 12
    • 1142291714 scopus 로고    scopus 로고
    • Mechanism of anionic conduction across ClC
    • Cohen, J., and K. Schulten. 2004. Mechanism of anionic conduction across ClC. Biophys. J. 86:836-845.
    • (2004) Biophys. J. , vol.86 , pp. 836-845
    • Cohen, J.1    Schulten, K.2
  • 13
    • 1142310688 scopus 로고    scopus 로고
    • Conduction mechanisms of chloride ions in ClC-type channels
    • Corry, B., M. O'Mara, and S.-H. Chung. 2004. Conduction mechanisms of chloride ions in ClC-type channels. Biophys. J. 86:846-860.
    • (2004) Biophys. J. , vol.86 , pp. 846-860
    • Corry, B.1    O'Mara, M.2    Chung, S.-H.3
  • 14
    • 0037122805 scopus 로고    scopus 로고
    • X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
    • Dutzler, R., E. B. Campbell, M. Cadene, B. T. Chalt, and R. MacKinnon. 2002. X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity. Nature. 415:287-294.
    • (2002) Nature , vol.415 , pp. 287-294
    • Dutzler, R.1    Campbell, E.B.2    Cadene, M.3    Chalt, B.T.4    MacKinnon, R.5
  • 15
    • 0037418859 scopus 로고    scopus 로고
    • Gating the selectivity filter in ClC chloride channels
    • Dutzler, R., E. B. Campbell, and R. MacKinnon. 2003. Gating the selectivity filter in ClC chloride channels. Science. 300:108-112.
    • (2003) Science , vol.300 , pp. 108-112
    • Dutzler, R.1    Campbell, E.B.2    MacKinnon, R.3
  • 17
    • 0036667742 scopus 로고    scopus 로고
    • CLC chloride channels: Correlating structure with function
    • Est́vez, R., and T. J. Jentsch. 2002. CLC chloride channels: correlating structure with function. Curr. Opin. Struct. Biol. 12:531-539.
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 531-539
    • Est́vez, R.1    Jentsch, T.J.2
  • 18
    • 0345146920 scopus 로고    scopus 로고
    • Conservation of chloride channel structure revealed by an inhibitor binding site in ClC-1
    • Estévez, R., B. Schroeder, A. Accardi, T. J. Jentsch, and M. Pusch. 2003. Conservation of chloride channel structure revealed by an inhibitor binding site in ClC-1. Neuron. 38:47-59.
    • (2003) Neuron , vol.38 , pp. 47-59
    • Estévez, R.1    Schroeder, B.2    Accardi, A.3    Jentsch, T.J.4    Pusch, M.5
  • 19
    • 0031627534 scopus 로고    scopus 로고
    • ClC and CFTR Chloride channel gating
    • Foskett, K. J. 1998. ClC and CFTR Chloride channel gating. Annu. Rev. Physiol. 60:689-717.
    • (1998) Annu. Rev. Physiol. , vol.60 , pp. 689-717
    • Foskett, K.J.1
  • 20
    • 0020521341 scopus 로고
    • Single chloride channels from Torpedo electroplax. Activation by protons
    • Hanke, W., and C. Miller. 1983. Single chloride channels from Torpedo electroplax. Activation by protons. J. Gen. Physiol. 82:25-45.
    • (1983) J. Gen. Physiol. , vol.82 , pp. 25-45
    • Hanke, W.1    Miller, C.2
  • 24
    • 0037126294 scopus 로고    scopus 로고
    • A biological role for prokaryotic ClC chloride channels
    • Iyer, R., T. M. Iverson, A. Accardi, and C. Miller. 2002. A biological role for prokaryotic ClC chloride channels. Nature. 419:715-718.
    • (2002) Nature , vol.419 , pp. 715-718
    • Iyer, R.1    Iverson, T.M.2    Accardi, A.3    Miller, C.4
  • 25
    • 84986497803 scopus 로고
    • Multidimensional free-energy calculations using the weighted histogram analysis method
    • Kumar, S., J. M. Rosenberg, D. Bouzida, R. H. Swendsen, and P. A. Kollman. 1995. Multidimensional free-energy calculations using the weighted histogram analysis method. J. Comput. Chem. 16:1339-1350.
    • (1995) J. Comput. Chem. , vol.16 , pp. 1339-1350
    • Kumar, S.1    Rosenberg, J.M.2    Bouzida, D.3    Swendsen, R.H.4    Kollman, P.A.5
  • 26
    • 0035789518 scopus 로고    scopus 로고
    • Gromacs 3.0: A package for molecular simulation and trajectory analysis
    • Lindahl, E., B. Hess, and D. van der Spoel. 2001. Gromacs 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7:306-317.
    • (2001) J. Mol. Model. , vol.7 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    Van Der Spoel, D.3
  • 27
    • 0029743660 scopus 로고    scopus 로고
    • Two physically distinct pores in the dimeric ClC-O chloride channel
    • Ludewig, U., M. Pusch, and T. J. Jentsch. 1996. Two physically distinct pores in the dimeric ClC-O chloride channel. Nature. 383:340-343.
    • (1996) Nature , vol.383 , pp. 340-343
    • Ludewig, U.1    Pusch, M.2    Jentsch, T.J.3
  • 28
    • 0033873930 scopus 로고    scopus 로고
    • A decade of CLC chloride channels: Structure, mechanism, and many unsettled questions
    • Maduke, M., C. Miller, and J. A. Mindell. 2000. A decade of CLC chloride channels: structure, mechanism, and many unsettled questions. Annu. Rev. Biophys. Biomol. Struct. 29:411-438.
    • (2000) Annu. Rev. Biophys. Biomol. Struct. , vol.29 , pp. 411-438
    • Maduke, M.1    Miller, C.2    Mindell, J.A.3
  • 29
    • 0030815133 scopus 로고    scopus 로고
    • Raster3D: Photorealistic molecular graphics
    • Merrit, E. A., and D. J. Bacon. 1997. Raster3D: photorealistic molecular graphics. Methods Emzymol. 277:505-524.
    • (1997) Methods Emzymol. , vol.277 , pp. 505-524
    • Merrit, E.A.1    Bacon, D.J.2
  • 30
    • 0021180163 scopus 로고
    • Dimeric structure of single chloride channels from Torpedo electroplax
    • Miller, C., and M. M. White. 1984. Dimeric structure of single chloride channels from Torpedo electroplax. Proc. Natl. Acad. Sci. USA. 81:2772-2775.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 2772-2775
    • Miller, C.1    White, M.M.2
  • 31
    • 1142310684 scopus 로고    scopus 로고
    • Anion pathway and potential energy profiles along curvilinear bacterial ClC CP pores: Electrostatic effects of charged residues
    • Miloshevsky, G. V., and P. C. Jordan. 2004. Anion pathway and potential energy profiles along curvilinear bacterial ClC CP pores: electrostatic effects of charged residues. Biophys. J. 86:825-835.
    • (2004) Biophys. J. , vol.86 , pp. 825-835
    • Miloshevsky, G.V.1    Jordan, P.C.2
  • 32
    • 84926811618 scopus 로고
    • Constant pressure molecular dynamics for molecular systems
    • Nose, S., and M. L. Klein. 1983. Constant pressure molecular dynamics for molecular systems. Moi. Phys. 50:1055-1076.
    • (1983) Moi. Phys. , vol.50 , pp. 1055-1076
    • Nose, S.1    Klein, M.L.2
  • 33
    • 0242290834 scopus 로고    scopus 로고
    • Mixed bilayer containing dipalmitoylphosphatidylcholine and dipalmitoylphosphatidylserine: Lipid complexation, ion binding, and electrostatics
    • Pandit, S. A., D. Bostick, and M. L. Berkowitz. 2003a. Mixed bilayer containing dipalmitoylphosphatidylcholine and dipalmitoylphosphatidylserine: lipid complexation, ion binding, and electrostatics. Biophys. J. 85:3120-3131.
    • (2003) Biophys. J. , vol.85 , pp. 3120-3131
    • Pandit, S.A.1    Bostick, D.2    Berkowitz, M.L.3
  • 34
    • 0037678992 scopus 로고    scopus 로고
    • Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl
    • Pandit, S. A., D. Bostick, and M. L. Berkowitz. 2003b. Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl. Biophys. J. 84:3743-3750.
    • (2003) Biophys. J. , vol.84 , pp. 3743-3750
    • Pandit, S.A.1    Bostick, D.2    Berkowitz, M.L.3
  • 35
    • 0019707626 scopus 로고
    • Polymorphic transitions in single crystals: A new molecular dynamics method
    • Parrinello, M., and A. Rahman. 1981. Polymorphic transitions in single crystals: a new molecular dynamics method. J. Appl. Phys. 52:7182-7190.
    • (1981) J. Appl. Phys. , vol.52 , pp. 7182-7190
    • Parrinello, M.1    Rahman, A.2
  • 37
    • 0028924935 scopus 로고
    • Gating of the voltage dependent chloride channel ClC-0 by the permeant anion
    • Pusch, M., U. Ludewig, A. Rehfeldt, and T. J. Jentsch. 1995. Gating of the voltage dependent chloride channel ClC-0 by the permeant anion. Nature. 373:527-531.
    • (1995) Nature , vol.373 , pp. 527-531
    • Pusch, M.1    Ludewig, U.2    Rehfeldt, A.3    Jentsch, T.J.4
  • 38
    • 0029633155 scopus 로고
    • The calculation of the potential of mean force using computer simulations
    • Roux, B. 1995. The calculation of the potential of mean force using computer simulations. Comput. Phys. Commun. 91:275-282.
    • (1995) Comput. Phys. Commun. , vol.91 , pp. 275-282
    • Roux, B.1
  • 39
    • 0033019968 scopus 로고    scopus 로고
    • Statistical mechanical equilibrium theory of selective ion channels
    • Roux, B. 1999. Statistical mechanical equilibrium theory of selective ion channels. Biophys. J. 77:139-153.
    • (1999) Biophys. J. , vol.77 , pp. 139-153
    • Roux, B.1
  • 40
    • 0030989242 scopus 로고    scopus 로고
    • pH-dependent interactions of Cd2+ and a carboxylate blocker with the rat ClC-1 chloride channel and its R30E mutant in the Sf-9 insect cell line
    • Rychkov, G. Y., D. S. J. Astill, B. Bennetts, B. P. Hughes, A. H. Bretag, and M. L. Roberts. 1997. pH-dependent interactions of Cd2+ and a carboxylate blocker with the rat ClC-1 chloride channel and its R30E mutant in the Sf-9 insect cell line. J. Physiol. 501:355-362.
    • (1997) J. Physiol. , vol.501 , pp. 355-362
    • Rychkov, G.Y.1    Astill, D.S.J.2    Bennetts, B.3    Hughes, B.P.4    Bretag, A.H.5    Roberts, M.L.6
  • 42
    • 0030404988 scopus 로고    scopus 로고
    • HOLE: A program for the analysis of the pore dimensions of ion channel structural models
    • Smart, O. S., J. G. Neduvelil, X. Wang, B. A. Wallace, and M. S. P. Sansom. 1996. HOLE: A program for the analysis of the pore dimensions of ion channel structural models. J. Mol. Graph. 14:354-360.
    • (1996) J. Mol. Graph. , vol.14 , pp. 354-360
    • Smart, O.S.1    Neduvelil, J.G.2    Wang, X.3    Wallace, B.A.4    Sansom, M.S.P.5
  • 43
    • 0342929614 scopus 로고
    • Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
    • Torrie, G. M., and J. P. Valleau. 1977. Nonphysical sampling distributions in Monte Carlo free-energy estimation: umbrella sampling. Journal of Computational Physics. 23:187-199.
    • (1977) Journal of Computational Physics , vol.23 , pp. 187-199
    • Torrie, G.M.1    Valleau, J.P.2
  • 44
    • 0000202909 scopus 로고    scopus 로고
    • Ewald summation for systems with slab geometry
    • Yeh, L, and M. L. Berkowitz. 1999. Ewald summation for systems with slab geometry. J. Chem. Phys. 111:3155-3162.
    • (1999) J. Chem. Phys. , vol.111 , pp. 3155-3162
    • Yeh, L.1    Berkowitz, M.L.2
  • 46
    • 0029937870 scopus 로고    scopus 로고
    • Hydrophilicity of cavities in proteins
    • Zhang, L., and J. Hermans. 1996. Hydrophilicity of cavities in proteins. Proteins. 24:433-438.
    • (1996) Proteins , vol.24 , pp. 433-438
    • Zhang, L.1    Hermans, J.2


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