-
4
-
-
0030999097
-
Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature
-
Berger, O., O. Edholm, and F. Jahnig. 1997. Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature. Biophys. J. 72: 2002-2013.
-
(1997)
Biophys. J.
, vol.72
, pp. 2002-2013
-
-
Berger, O.1
Edholm, O.2
Jahnig, F.3
-
5
-
-
0041320867
-
Effect of sodium chloride on a lipid bilayer
-
Böckmann, R. A., A. Hac, T. Heimberg, and H. Grubmüller. 2003. Effect of sodium chloride on a lipid bilayer. Biophys. J. 85:1647-1655.
-
(2003)
Biophys. J.
, vol.85
, pp. 1647-1655
-
-
Böckmann, R.A.1
Hac, A.2
Heimberg, T.3
Grubmüller, H.4
-
7
-
-
0037636309
-
The implementation of slab geometry for membrane-channel molecular dynamics simulations
-
Bostick, D., and M. L. Berkowitz. 2003. The implementation of slab geometry for membrane-channel molecular dynamics simulations. Biophys. J. 85:97-107.
-
(2003)
Biophys. J.
, vol.85
, pp. 97-107
-
-
Bostick, D.1
Berkowitz, M.L.2
-
9
-
-
0042377364
-
Side-chain charge effects and conductance determinants in the pore of ClC-0 chloride channels
-
Chen, M.-F., and T.-Y. Chen. 2003. Side-chain charge effects and conductance determinants in the pore of ClC-0 chloride channels. J. Gen. Physiol. 122:133-145.
-
(2003)
J. Gen. Physiol.
, vol.122
, pp. 133-145
-
-
Chen, M.-F.1
Chen, T.-Y.2
-
10
-
-
0242415285
-
Electrostatic control and chloride regulation of the fast gating of ClC-0 chloride channels
-
Chen, T.-Y., M.-F. Chen, and C-W. Lin. 2003. Electrostatic control and chloride regulation of the fast gating of ClC-0 chloride channels. J. Gen. Physiol. 122:641-651.
-
(2003)
J. Gen. Physiol.
, vol.122
, pp. 641-651
-
-
Chen, T.-Y.1
Chen, M.-F.2
Lin, C.-W.3
-
12
-
-
1142291714
-
Mechanism of anionic conduction across ClC
-
Cohen, J., and K. Schulten. 2004. Mechanism of anionic conduction across ClC. Biophys. J. 86:836-845.
-
(2004)
Biophys. J.
, vol.86
, pp. 836-845
-
-
Cohen, J.1
Schulten, K.2
-
13
-
-
1142310688
-
Conduction mechanisms of chloride ions in ClC-type channels
-
Corry, B., M. O'Mara, and S.-H. Chung. 2004. Conduction mechanisms of chloride ions in ClC-type channels. Biophys. J. 86:846-860.
-
(2004)
Biophys. J.
, vol.86
, pp. 846-860
-
-
Corry, B.1
O'Mara, M.2
Chung, S.-H.3
-
14
-
-
0037122805
-
X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
-
Dutzler, R., E. B. Campbell, M. Cadene, B. T. Chalt, and R. MacKinnon. 2002. X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity. Nature. 415:287-294.
-
(2002)
Nature
, vol.415
, pp. 287-294
-
-
Dutzler, R.1
Campbell, E.B.2
Cadene, M.3
Chalt, B.T.4
MacKinnon, R.5
-
15
-
-
0037418859
-
Gating the selectivity filter in ClC chloride channels
-
Dutzler, R., E. B. Campbell, and R. MacKinnon. 2003. Gating the selectivity filter in ClC chloride channels. Science. 300:108-112.
-
(2003)
Science
, vol.300
, pp. 108-112
-
-
Dutzler, R.1
Campbell, E.B.2
MacKinnon, R.3
-
16
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U., L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. Pedersen. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103:8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.6
-
17
-
-
0036667742
-
CLC chloride channels: Correlating structure with function
-
Est́vez, R., and T. J. Jentsch. 2002. CLC chloride channels: correlating structure with function. Curr. Opin. Struct. Biol. 12:531-539.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 531-539
-
-
Est́vez, R.1
Jentsch, T.J.2
-
18
-
-
0345146920
-
Conservation of chloride channel structure revealed by an inhibitor binding site in ClC-1
-
Estévez, R., B. Schroeder, A. Accardi, T. J. Jentsch, and M. Pusch. 2003. Conservation of chloride channel structure revealed by an inhibitor binding site in ClC-1. Neuron. 38:47-59.
-
(2003)
Neuron
, vol.38
, pp. 47-59
-
-
Estévez, R.1
Schroeder, B.2
Accardi, A.3
Jentsch, T.J.4
Pusch, M.5
-
19
-
-
0031627534
-
ClC and CFTR Chloride channel gating
-
Foskett, K. J. 1998. ClC and CFTR Chloride channel gating. Annu. Rev. Physiol. 60:689-717.
-
(1998)
Annu. Rev. Physiol.
, vol.60
, pp. 689-717
-
-
Foskett, K.J.1
-
20
-
-
0020521341
-
Single chloride channels from Torpedo electroplax. Activation by protons
-
Hanke, W., and C. Miller. 1983. Single chloride channels from Torpedo electroplax. Activation by protons. J. Gen. Physiol. 82:25-45.
-
(1983)
J. Gen. Physiol.
, vol.82
, pp. 25-45
-
-
Hanke, W.1
Miller, C.2
-
21
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B., H. Bekker, H. J. C. Berendsen, and J. G. E. M. Fraaige. 1997. LINCS: a linear constraint solver for molecular simulations. J. Comput. Chem. 18:1463-1472.
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaige, J.G.E.M.4
-
24
-
-
0037126294
-
A biological role for prokaryotic ClC chloride channels
-
Iyer, R., T. M. Iverson, A. Accardi, and C. Miller. 2002. A biological role for prokaryotic ClC chloride channels. Nature. 419:715-718.
-
(2002)
Nature
, vol.419
, pp. 715-718
-
-
Iyer, R.1
Iverson, T.M.2
Accardi, A.3
Miller, C.4
-
25
-
-
84986497803
-
Multidimensional free-energy calculations using the weighted histogram analysis method
-
Kumar, S., J. M. Rosenberg, D. Bouzida, R. H. Swendsen, and P. A. Kollman. 1995. Multidimensional free-energy calculations using the weighted histogram analysis method. J. Comput. Chem. 16:1339-1350.
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 1339-1350
-
-
Kumar, S.1
Rosenberg, J.M.2
Bouzida, D.3
Swendsen, R.H.4
Kollman, P.A.5
-
26
-
-
0035789518
-
Gromacs 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl, E., B. Hess, and D. van der Spoel. 2001. Gromacs 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7:306-317.
-
(2001)
J. Mol. Model.
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
27
-
-
0029743660
-
Two physically distinct pores in the dimeric ClC-O chloride channel
-
Ludewig, U., M. Pusch, and T. J. Jentsch. 1996. Two physically distinct pores in the dimeric ClC-O chloride channel. Nature. 383:340-343.
-
(1996)
Nature
, vol.383
, pp. 340-343
-
-
Ludewig, U.1
Pusch, M.2
Jentsch, T.J.3
-
28
-
-
0033873930
-
A decade of CLC chloride channels: Structure, mechanism, and many unsettled questions
-
Maduke, M., C. Miller, and J. A. Mindell. 2000. A decade of CLC chloride channels: structure, mechanism, and many unsettled questions. Annu. Rev. Biophys. Biomol. Struct. 29:411-438.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 411-438
-
-
Maduke, M.1
Miller, C.2
Mindell, J.A.3
-
29
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merrit, E. A., and D. J. Bacon. 1997. Raster3D: photorealistic molecular graphics. Methods Emzymol. 277:505-524.
-
(1997)
Methods Emzymol.
, vol.277
, pp. 505-524
-
-
Merrit, E.A.1
Bacon, D.J.2
-
30
-
-
0021180163
-
Dimeric structure of single chloride channels from Torpedo electroplax
-
Miller, C., and M. M. White. 1984. Dimeric structure of single chloride channels from Torpedo electroplax. Proc. Natl. Acad. Sci. USA. 81:2772-2775.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 2772-2775
-
-
Miller, C.1
White, M.M.2
-
31
-
-
1142310684
-
Anion pathway and potential energy profiles along curvilinear bacterial ClC CP pores: Electrostatic effects of charged residues
-
Miloshevsky, G. V., and P. C. Jordan. 2004. Anion pathway and potential energy profiles along curvilinear bacterial ClC CP pores: electrostatic effects of charged residues. Biophys. J. 86:825-835.
-
(2004)
Biophys. J.
, vol.86
, pp. 825-835
-
-
Miloshevsky, G.V.1
Jordan, P.C.2
-
32
-
-
84926811618
-
Constant pressure molecular dynamics for molecular systems
-
Nose, S., and M. L. Klein. 1983. Constant pressure molecular dynamics for molecular systems. Moi. Phys. 50:1055-1076.
-
(1983)
Moi. Phys.
, vol.50
, pp. 1055-1076
-
-
Nose, S.1
Klein, M.L.2
-
33
-
-
0242290834
-
Mixed bilayer containing dipalmitoylphosphatidylcholine and dipalmitoylphosphatidylserine: Lipid complexation, ion binding, and electrostatics
-
Pandit, S. A., D. Bostick, and M. L. Berkowitz. 2003a. Mixed bilayer containing dipalmitoylphosphatidylcholine and dipalmitoylphosphatidylserine: lipid complexation, ion binding, and electrostatics. Biophys. J. 85:3120-3131.
-
(2003)
Biophys. J.
, vol.85
, pp. 3120-3131
-
-
Pandit, S.A.1
Bostick, D.2
Berkowitz, M.L.3
-
34
-
-
0037678992
-
Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl
-
Pandit, S. A., D. Bostick, and M. L. Berkowitz. 2003b. Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl. Biophys. J. 84:3743-3750.
-
(2003)
Biophys. J.
, vol.84
, pp. 3743-3750
-
-
Pandit, S.A.1
Bostick, D.2
Berkowitz, M.L.3
-
35
-
-
0019707626
-
Polymorphic transitions in single crystals: A new molecular dynamics method
-
Parrinello, M., and A. Rahman. 1981. Polymorphic transitions in single crystals: a new molecular dynamics method. J. Appl. Phys. 52:7182-7190.
-
(1981)
J. Appl. Phys.
, vol.52
, pp. 7182-7190
-
-
Parrinello, M.1
Rahman, A.2
-
36
-
-
0036821666
-
Mechanisms of block of muscle type CLC chloride channels
-
Pusch, M., A. Accardi, A. Liantonio, P. Guida, S. Traverso, D. C. Camerino, and F. Conti. 2002. Mechanisms of block of muscle type CLC chloride channels (Review). Mol. Membr. Biol. 19:285-292.
-
(2002)
Mol. Membr. Biol.
, vol.19
, pp. 285-292
-
-
Pusch, M.1
Accardi, A.2
Liantonio, A.3
Guida, P.4
Traverso, S.5
Camerino, D.C.6
Conti, F.7
-
37
-
-
0028924935
-
Gating of the voltage dependent chloride channel ClC-0 by the permeant anion
-
Pusch, M., U. Ludewig, A. Rehfeldt, and T. J. Jentsch. 1995. Gating of the voltage dependent chloride channel ClC-0 by the permeant anion. Nature. 373:527-531.
-
(1995)
Nature
, vol.373
, pp. 527-531
-
-
Pusch, M.1
Ludewig, U.2
Rehfeldt, A.3
Jentsch, T.J.4
-
38
-
-
0029633155
-
The calculation of the potential of mean force using computer simulations
-
Roux, B. 1995. The calculation of the potential of mean force using computer simulations. Comput. Phys. Commun. 91:275-282.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 275-282
-
-
Roux, B.1
-
39
-
-
0033019968
-
Statistical mechanical equilibrium theory of selective ion channels
-
Roux, B. 1999. Statistical mechanical equilibrium theory of selective ion channels. Biophys. J. 77:139-153.
-
(1999)
Biophys. J.
, vol.77
, pp. 139-153
-
-
Roux, B.1
-
40
-
-
0030989242
-
pH-dependent interactions of Cd2+ and a carboxylate blocker with the rat ClC-1 chloride channel and its R30E mutant in the Sf-9 insect cell line
-
Rychkov, G. Y., D. S. J. Astill, B. Bennetts, B. P. Hughes, A. H. Bretag, and M. L. Roberts. 1997. pH-dependent interactions of Cd2+ and a carboxylate blocker with the rat ClC-1 chloride channel and its R30E mutant in the Sf-9 insect cell line. J. Physiol. 501:355-362.
-
(1997)
J. Physiol.
, vol.501
, pp. 355-362
-
-
Rychkov, G.Y.1
Astill, D.S.J.2
Bennetts, B.3
Hughes, B.P.4
Bretag, A.H.5
Roberts, M.L.6
-
41
-
-
0029961958
-
Concentration and pH dependence of skeletal muscle chloride channel ClC-1
-
Rychkov, G. Y., M. Pusch, D. S. J. Astill, M. L. Roberts, T. J. Jentsch, and A. H. Bretag. 1996. Concentration and pH dependence of skeletal muscle chloride channel ClC-1. J. Physiol. 497:423-435.
-
(1996)
J. Physiol.
, vol.497
, pp. 423-435
-
-
Rychkov, G.Y.1
Pusch, M.2
Astill, D.S.J.3
Roberts, M.L.4
Jentsch, T.J.5
Bretag, A.H.6
-
42
-
-
0030404988
-
HOLE: A program for the analysis of the pore dimensions of ion channel structural models
-
Smart, O. S., J. G. Neduvelil, X. Wang, B. A. Wallace, and M. S. P. Sansom. 1996. HOLE: A program for the analysis of the pore dimensions of ion channel structural models. J. Mol. Graph. 14:354-360.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 354-360
-
-
Smart, O.S.1
Neduvelil, J.G.2
Wang, X.3
Wallace, B.A.4
Sansom, M.S.P.5
-
43
-
-
0342929614
-
Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
-
Torrie, G. M., and J. P. Valleau. 1977. Nonphysical sampling distributions in Monte Carlo free-energy estimation: umbrella sampling. Journal of Computational Physics. 23:187-199.
-
(1977)
Journal of Computational Physics
, vol.23
, pp. 187-199
-
-
Torrie, G.M.1
Valleau, J.P.2
-
44
-
-
0000202909
-
Ewald summation for systems with slab geometry
-
Yeh, L, and M. L. Berkowitz. 1999. Ewald summation for systems with slab geometry. J. Chem. Phys. 111:3155-3162.
-
(1999)
J. Chem. Phys.
, vol.111
, pp. 3155-3162
-
-
Yeh, L.1
Berkowitz, M.L.2
-
46
-
-
0029937870
-
Hydrophilicity of cavities in proteins
-
Zhang, L., and J. Hermans. 1996. Hydrophilicity of cavities in proteins. Proteins. 24:433-438.
-
(1996)
Proteins
, vol.24
, pp. 433-438
-
-
Zhang, L.1
Hermans, J.2
|