The goodwin model: Simulating the effect of light pulses on the circadian sporulation rhythm of Neurospora crassa

Journal of Theoretical Biology

Volumn 209, Issue 1, 2001, Pages 29-42

  Ruoff, Peter ^a   Vinsjevik, Merete ^a   Monnerjahn, Christian ^a   Rensing, Ludger ^b  

^a UNIVERSITY OF STAVANGER   (Norway)

^b UNIVERSITY OF BREMEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOHEXIMIDE; MESSENGER RNA;

ARTICLE; CIRCADIAN RHYTHM; GENETIC TRANSCRIPTION; HEAT SHOCK; MATHEMATICAL ANALYSIS; NEGATIVE FEEDBACK; NEUROSPORA CRASSA; NONHUMAN; OSCILLATOR; PHOTOPERIODICITY; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION; SIGNAL TRANSDUCTION; SPOROGENESIS; STEADY STATE;

MAMMALIA; NEUROSPORA; NEUROSPORA CRASSA;

EID: 0035819778     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.2000.2239     Document Type: Article

References (50)

1. Negative feedback defining a circadian clock: Autoregulation of the clock gene frequency
2. White collar proteins: PASsing the light signal in Neurospora crassa
3. White collar-1, a central regulator of blue light responses in Neurospora, is a zinc finger protein
4. Roles in dimerization and blue light photoresponse of the PAS and LOV domains of Neurospora crassa white collar proteins
5. Light and development regulation of the gene con-10 of Neurospora crassa
6. Light-induced resetting of a circadian clock is mediated by a rapid increase in frequency transcript
7. Neurospora wc-1 and wc-2: Transcription, photoresponses, and the origins of circadian rhythmicity
8. An end in the beginning
9. Molecular bases for circadian clocks
10. Eukaryotic circadian systems: Cycles in common
11. Alternative initiation of translation and time-specific phosphorylation yield multiple forms of the essential clock protein FREQUENCY
12. Theoretical models for circadian rhythms in Neurospora and Drosophila
13. Effects of light and temperature steps on circadian rhythms of Neurospora and Gonyaulax
14. Oscillatory behavior in enzymatic control processes
15. LSODE and LSODI, two new initial value ordinary differential equation solvers
16. A proposal for temperature compensation of the circadian rhythm in Drosophila based on dimerization of the PER protein
17. PER protein interactions and temperature compensation of a circadian clock in Drosophila
18. A feedback model for biological rhythms. Mathematical description and basic properties of the model
19. Circadian rhythms in Neurospora crassa: Biochemistry and genetics
20. Temperature compensation of circadian rhythms: Control of the period in a model for circadian oscillations of the PER protein in Drosophila
21. A model for circadian rhythms in Drosophila incorporating the formation of a complex between PER and TIM proteins
22. Modelling the circadian system of the weta, Hemideina thoracica (Orthoptera: Stenopelmatidae)
23. Simulations of free-running rhythms, light entrainment and the light-pulse phase response curves for the locomotor activity rhythm in period mutant of Drosophila melanogaster
24. Protein-protein interaction via PAS domains: Role of the PAS domain in positive and negative regulation of the bHLH/PAS dioxin receptor-Amt transcription factor complex
25. White collar 2, a partner in blue-light signal transduction, controlling expression of light-regulated genes in Neurospora crassa
26. Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock
27. Time at the end of the millenium: The Neurospora clock
28. Blue light-regulated expression of geranylgeranyl pyrophosphate synthetase (albino-3) gene in Neurospora crassa
29. Biochemical and genetic aspects of the conidiation rhythm in Neurospora crassa: Phase shifting by metabolite inhibitors
30. A mathematical model for the intracellular circadian rhythm generator
31. A model of molecular circadian clocks: Multiple mechanisms for phase shifting and a requirement for strong nonlinear interactions
32. GATA-binding transcription factors in hematopoietic cells
33. Assay and characteristics of circadian rhythmicity in liquid cultures of Neurospora crassa
34. A limit cycle interpretation of a mosquito circadian oscillator
35. The circadian eclosion rhythm in Sarcophaga argyrostoma: A limit cycle representation of the pacemaker
36. Perturbations of cellular circadian rhythms by light and temperature
37. The temperature-compensated Goodwin model simulates many circadian clock properties
38. Circadian rhythm and protein turnover: The influence of temperature on the period lengths of clock mutants simulated by the Goodwin Oscillator
39. Modelling temperature compensation in chemical and biological oscillators
40. The Goodwin model: Simulating the effect of cycloheximide and heat shock on the sporulation rhythm of Neurospora crassa
41. The Goodwin oscillator: On the importance of degradation reactions in the circadian clock
42. The effect of light on a circadian rhythm of conidiation in Neurospora crassa
43. The biphasic fluence response of carotenogenesis in Neurospora crassa: Temporary insensitivity of the photoreceptor system
44. On the role of energy metabolism in Neurospora circadian clock function
45. Role of a white collar-1-white collar-2 complex in blue-light signal transduction
46. PAS domain S-boxes in Archea, Bacteria and sensors for oxygen and redox