-
1
-
-
0003640130
-
-
San Diego: Harcourt Academic Press
-
nd edition. San Diego: Harcourt Academic Press; 2001. p. 382-387.
-
(2001)
nd Edition
, pp. 382-387
-
-
Metzler, D.E.1
-
2
-
-
0030200347
-
A duplicated catalytic motif in a new superfamily of phosphohydrolases and phospholipid synthases that includes poxvirus envelope proteins
-
Koonin EV. A duplicated catalytic motif in a new superfamily of phosphohydrolases and phospholipid synthases that includes poxvirus envelope proteins. Trends Biochem Sci 1996;21:242-243.
-
(1996)
Trends Biochem Sci
, vol.21
, pp. 242-243
-
-
Koonin, E.V.1
-
4
-
-
0029921149
-
A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases. Identification of duplicated repeats and potential active site residues
-
Ponting CP, Kerr ID. A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases. Identification of duplicated repeats and potential active site residues. Protein Sci 1996;5:914-922.
-
(1996)
Protein Sci
, vol.5
, pp. 914-922
-
-
Ponting, C.P.1
Kerr, I.D.2
-
5
-
-
0029564902
-
Human ADP-ribosylation factor-activated phosphatidylcholine-specific phospholipase D defines a new and highly conserved gene family
-
Hammond SM, Altshuller YM, Sung T-C, Rudge SA, Rose K, Engebrecht J, Morris AJ, Frohman MA. Human ADP-ribosylation factor-activated phosphatidylcholine-specific phospholipase D defines a new and highly conserved gene family. J Biol Chem 1995;270:29640-29643.
-
(1995)
J Biol Chem
, vol.270
, pp. 29640-29643
-
-
Hammond, S.M.1
Altshuller, Y.M.2
Sung, T.-C.3
Rudge, S.A.4
Rose, K.5
Engebrecht, J.6
Morris, A.J.7
Frohman, M.A.8
-
6
-
-
0030803536
-
Mutagenesis of phospholipase D defines a superfamily including a trans-Golgi viral protein required for poxvirus pathogenicity
-
Sung T-C, Roper RL, Zhang Y, Rudge SA, Temel R, Hammond SM, Morris AJ, Moss B, Engebrecht J, Frohman MA. Mutagenesis of phospholipase D defines a superfamily including a trans-Golgi viral protein required for poxvirus pathogenicity. EMBO J 1997;16:4519-4530.
-
(1997)
EMBO J
, vol.16
, pp. 4519-4530
-
-
Sung, T.-C.1
Roper, R.L.2
Zhang, Y.3
Rudge, S.A.4
Temel, R.5
Hammond, S.M.6
Morris, A.J.7
Moss, B.8
Engebrecht, J.9
Frohman, M.A.10
-
7
-
-
0032482941
-
Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate
-
Gottlin EB, Rudolph AE, Zhao Y, Matthews HR, Dixon JE. Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate. Proc Nat Acad Sci USA 1998;95:9202-9207.
-
(1998)
Proc Nat Acad Sci USA
, vol.95
, pp. 9202-9207
-
-
Gottlin, E.B.1
Rudolph, A.E.2
Zhao, Y.3
Matthews, H.R.4
Dixon, J.E.5
-
8
-
-
0033597132
-
Expression, characterization, and mutagenesis of the Yersinia pestis murine toxin, a phospholipase D superfamily member
-
Rudolph AE, Stuckey JA, Zhao Y, Matthews HR, Patton WA, Moss J, Dixon JE. Expression, characterization, and mutagenesis of the Yersinia pestis murine toxin, a phospholipase D superfamily member. J Biol Chem 1999;274:11824-11831.
-
(1999)
J Biol Chem
, vol.274
, pp. 11824-11831
-
-
Rudolph, A.E.1
Stuckey, J.A.2
Zhao, Y.3
Matthews, H.R.4
Patton, W.A.5
Moss, J.6
Dixon, J.E.7
-
9
-
-
0032807666
-
The PLD superfamily: Insights into catalysis
-
Waite M. The PLD superfamily: Insights into catalysis. Biochim Biophys Acta 1999;1439:187-197.
-
(1999)
Biochim Biophys Acta
, vol.1439
, pp. 187-197
-
-
Waite, M.1
-
10
-
-
0034142081
-
Phospholipase D: Molecular and cell biology of a novel gene family
-
Liscovitch M, Czarny M, Fiucci G, Tang X. Phospholipase D: Molecular and cell biology of a novel gene family. Biochem J 2000;345:401-415.
-
(2000)
Biochem J
, vol.345
, pp. 401-415
-
-
Liscovitch, M.1
Czarny, M.2
Fiucci, G.3
Tang, X.4
-
11
-
-
4444285012
-
-
Iowa State University, personal communication
-
Meisch ME, Iowa State University, personal communication, 2001.
-
(2001)
-
-
Meisch, M.E.1
-
12
-
-
0033010811
-
Crystal structure of a phospholipase D family member
-
Stuckey JA, Dixon JE. Crystal structure of a phospholipase D family member. Nature Struct Biol 1999;6:278-284.
-
(1999)
Nature Struct Biol
, vol.6
, pp. 278-284
-
-
Stuckey, J.A.1
Dixon, J.E.2
-
13
-
-
0034660230
-
The first crystal structure of a phospholipase D
-
Leiros I, Secundo F, Zambonelli C, Servi S, Hough E. The first crystal structure of a phospholipase D. Structure 2000;8:655-667.
-
(2000)
Structure
, vol.8
, pp. 655-667
-
-
Leiros, I.1
Secundo, F.2
Zambonelli, C.3
Servi, S.4
Hough, E.5
-
14
-
-
0033199570
-
Location of the catalytic nucleophile of phospholipase D of Streptomyces antibioticus in the C-terminal half domain
-
Iwasaki Y, Horiike S, Matsushima K, Yamane T. Location of the catalytic nucleophile of phospholipase D of Streptomyces antibioticus in the C-terminal half domain. Eur J Biochem 1999;264:577-581.
-
(1999)
Eur J Biochem
, vol.264
, pp. 577-581
-
-
Iwasaki, Y.1
Horiike, S.2
Matsushima, K.3
Yamane, T.4
-
15
-
-
0025763531
-
Phospholipase D-catalyzed hydrolysis of phosphatidylcholine occurs with P-O bond cleavage
-
Holbrook PG, Pannell LK, Daly JW. Phospholipase D-catalyzed hydrolysis of phosphatidylcholine occurs with P-O bond cleavage. Biochim Biophys Acta 1991;1084:155-158.
-
(1991)
Biochim Biophys Acta
, vol.1084
, pp. 155-158
-
-
Holbrook, P.G.1
Pannell, L.K.2
Daly, J.W.3
-
18
-
-
0031447797
-
On the kinetic mechanism of phospholipase D from Streptomyces sp. in an emulsion system
-
Carrea G, D'Arrigo P, Mazzotti M, Secundo F, Servi S. On the kinetic mechanism of phospholipase D from Streptomyces sp. in an emulsion system. Biocatal Biotranform 1997;15:251-264.
-
(1997)
Biocatal Biotranform
, vol.15
, pp. 251-264
-
-
Carrea, G.1
D'Arrigo, P.2
Mazzotti, M.3
Secundo, F.4
Servi, S.5
-
19
-
-
0031104762
-
Using phospholipases for phospholipid modification
-
D'Arrigo P, Servi S. Using phospholipases for phospholipid modification. Tibtech 1997;15:90-96.
-
(1997)
Tibtech
, vol.15
, pp. 90-96
-
-
D'Arrigo, P.1
Servi, S.2
-
20
-
-
0035931446
-
The substrate requirements of phospholipase D
-
Bossi L, D'Arrigo P, Pedrocchi-Fantoni G, Mele A, Servi S, Leiros I. The substrate requirements of phospholipase D. J Mol Catal B 2001;11:433-438.
-
(2001)
J Mol Catal B
, vol.11
, pp. 433-438
-
-
Bossi, L.1
D'Arrigo, P.2
Pedrocchi-Fantoni, G.3
Mele, A.4
Servi, S.5
Leiros, I.6
-
21
-
-
0023939383
-
Kinetic evaluation of conversion of phosphatidylcholine to phosphatidylethanolamine by phospholipase D from different sources
-
Juneja LR, Kazuoka T, Yamane T, Shimizu S. Kinetic evaluation of conversion of phosphatidylcholine to phosphatidylethanolamine by phospholipase D from different sources. Biochim Biophys Acta 1988;960:334-341.
-
(1988)
Biochim Biophys Acta
, vol.960
, pp. 334-341
-
-
Juneja, L.R.1
Kazuoka, T.2
Yamane, T.3
Shimizu, S.4
-
22
-
-
0024392604
-
Conversion of phosphatidylcholine to phosphatidylserine by various phospholipases D in the presence of L- or D-serine
-
Juneja LR, Kazuoka T, Goto N, Yamane T, Shimizu S. Conversion of phosphatidylcholine to phosphatidylserine by various phospholipases D in the presence of L- or D-serine. Biochim Biophys Acta 1989;1003:277-283.
-
(1989)
Biochim Biophys Acta
, vol.1003
, pp. 277-283
-
-
Juneja, L.R.1
Kazuoka, T.2
Goto, N.3
Yamane, T.4
Shimizu, S.5
-
23
-
-
33748968137
-
Preparative transformation of natural phospholipids catalysed by phospholipase D from Streptomyces
-
D'Arrigo P, de Ferra L, Piergianni V, Selva A, Servi S, Strini A. Preparative transformation of natural phospholipids catalysed by phospholipase D from Streptomyces. J Chem Soc Perkin Trans 1 1996;2651-2656.
-
(1996)
J Chem Soc Perkin Trans 1
, pp. 2651-2656
-
-
D'Arrigo, P.1
De Ferra, L.2
Piergianni, V.3
Selva, A.4
Servi, S.5
Strini, A.6
-
24
-
-
33748986704
-
Enzyme-mediated synthesis of two diastereoisomeric forms of phosphatidylglycerol and of diphosphatidylglycerol (cardiolipin)
-
D'Arrigo P, de Ferra L, Pedrocchi-Fantoni G, Scarcelli D, Servi S, Strini A. Enzyme-mediated synthesis of two diastereoisomeric forms of phosphatidylglycerol and of diphosphatidylglycerol (cardiolipin). J Chem Soc Perkin Trans 1 1996;2657-2660.
-
(1996)
J Chem Soc Perkin Trans 1
, pp. 2657-2660
-
-
D'Arrigo, P.1
De Ferra, L.2
Pedrocchi-Fantoni, G.3
Scarcelli, D.4
Servi, S.5
Strini, A.6
-
25
-
-
0033028666
-
Purification, characterization, and sequence determination of phospholipase D secreted by Streptoverticillium cinnamoneum
-
Ogino C, Negi Y, Matsumiya T, Nakaoka K, Kondo A, Kuroda S, Tokuyama S, Kikkawa U, Yamane T, Fukuda H. Purification, characterization, and sequence determination of phospholipase D secreted by Streptoverticillium cinnamoneum. J Biochem 1999;125:263-269.
-
(1999)
J Biochem
, vol.125
, pp. 263-269
-
-
Ogino, C.1
Negi, Y.2
Matsumiya, T.3
Nakaoka, K.4
Kondo, A.5
Kuroda, S.6
Tokuyama, S.7
Kikkawa, U.8
Yamane, T.9
Fukuda, H.10
-
26
-
-
0029705324
-
Automated docking of flexible ligands. Applications of AutoDock
-
Goodsell DS, Morris GM, Olson AJ. Automated docking of flexible ligands. Applications of AutoDock. J Mol Recog 1996;9:1-5.
-
(1996)
J Mol Recog
, vol.9
, pp. 1-5
-
-
Goodsell, D.S.1
Morris, G.M.2
Olson, A.J.3
-
27
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
Morris GM, Goodsell DS, Halliday RS, Huey R, Hart WE, Belew RK, Olson AJ. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J Comput Chem 1998;19:1639-1662.
-
(1998)
J Comput Chem
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
28
-
-
0031058806
-
Automated docking of monosaccharide substrates and analogues and methyl α-acarviosinide in the glucoamylase active site
-
Coutinho PM, Dowd MK, Reilly PJ. Automated docking of monosaccharide substrates and analogues and methyl α-acarviosinide in the glucoamylase active site. Proteins 1997;27:235-248.
-
(1997)
Proteins
, vol.27
, pp. 235-248
-
-
Coutinho, P.M.1
Dowd, M.K.2
Reilly, P.J.3
-
29
-
-
0031051626
-
Automated docking of isomaltose analogues in the glucoamylase active site
-
Coutinho PM, Dowd MK, Reilly PJ. Automated docking of isomaltose analogues in the glucoamylase active site. Carbohydr Res 1997;297:309-324.
-
(1997)
Carbohydr Res
, vol.297
, pp. 309-324
-
-
Coutinho, P.M.1
Dowd, M.K.2
Reilly, P.J.3
-
30
-
-
0031007588
-
Automated docking of glucosyl disaccharides in the glucoamylase active site
-
Coutinho PM, Dowd MK, Reilly PJ. Automated docking of glucosyl disaccharides in the glucoamylase active site. Proteins 1997;28:162-173.
-
(1997)
Proteins
, vol.28
, pp. 162-173
-
-
Coutinho, P.M.1
Dowd, M.K.2
Reilly, P.J.3
-
31
-
-
0032098236
-
Automated docking of α-(1,4)-and α-(1,6)-linked glucosyl trisaccharides in the glucoamylase active site
-
Coutinho PM, Dowd MK, Reilly PJ. Automated docking of α-(1,4)-and α-(1,6)-linked glucosyl trisaccharides in the glucoamylase active site. Ind Eng Chem Res 1998;37:2148-2157.
-
(1998)
Ind Eng Chem Res
, vol.37
, pp. 2148-2157
-
-
Coutinho, P.M.1
Dowd, M.K.2
Reilly, P.J.3
-
32
-
-
0032716849
-
Automated docking of maltose, 2-deoxymaltose, and maltotetraose into the soybean β-amylase active site
-
Laederach A, Dowd MK, Coutinho PM, Reilly PJ. Automated docking of maltose, 2-deoxymaltose, and maltotetraose into the soybean β-amylase active site. Proteins 1999;37:166-175.
-
(1999)
Proteins
, vol.37
, pp. 166-175
-
-
Laederach, A.1
Dowd, M.K.2
Coutinho, P.M.3
Reilly, P.J.4
-
33
-
-
0034257149
-
Automated docking of α-1,4-and α-1,6-linked glucosyl trisaccharides and maltopentaose into the soybean β-amylase active site
-
Rockey WM, Laederach A, Reilly PJ. Automated docking of α-1,4-and α-1,6-linked glucosyl trisaccharides and maltopentaose into the soybean β-amylase active site. Proteins 2000;40:299-309.
-
(2000)
Proteins
, vol.40
, pp. 299-309
-
-
Rockey, W.M.1
Laederach, A.2
Reilly, P.J.3
-
34
-
-
0035800084
-
Polysaccharide recognition by surfactant protein D: Novel interactions of a C-type lectin with nonterminal glucosyl residues
-
Allen MJ, Laederach A, Reilly PJ, Mason RJ. Polysaccharide recognition by surfactant protein D: Novel interactions of a C-type lectin with nonterminal glucosyl residues. Biochemistry 2001;40:7789-7798.
-
(2001)
Biochemistry
, vol.40
, pp. 7789-7798
-
-
Allen, M.J.1
Laederach, A.2
Reilly, P.J.3
Mason, R.J.4
-
35
-
-
0036783337
-
Understanding protein structure-function relationships in Family 47 α-1,2-mannosidases through computational docking of ligands
-
Mulakala C, Reilly PJ. Understanding protein structure-function relationships in Family 47 α-1,2-mannosidases through computational docking of ligands. Proteins 2002;49:125-134.
-
(2002)
Proteins
, vol.49
, pp. 125-134
-
-
Mulakala, C.1
Reilly, P.J.2
-
36
-
-
0141990820
-
Specific empirical free energy function for automated docking of carbohydrates to proteins
-
Laederach A, Reilly PJ. Specific empirical free energy function for automated docking of carbohydrates to proteins. J Comput Chem 2003;24:1748-1757.
-
(2003)
J Comput Chem
, vol.24
, pp. 1748-1757
-
-
Laederach, A.1
Reilly, P.J.2
-
37
-
-
0000526534
-
A molecular mechanics field (MM3) for alcohols and ethers
-
Allinger NL, Rahman M, Lii JH. A molecular mechanics field (MM3) for alcohols and ethers. J Am Chem Soc 1990;112:8293-8307.
-
(1990)
J Am Chem Soc
, vol.112
, pp. 8293-8307
-
-
Allinger, N.L.1
Rahman, M.2
Lii, J.H.3
-
38
-
-
0037439856
-
Molecular mechanics force-field development for amino acid zwitterions
-
Kirschner KN, Lewin AH, Bowen JP. Molecular mechanics force-field development for amino acid zwitterions. J Comput Chem 2003;24:111-128.
-
(2003)
J Comput Chem
, vol.24
, pp. 111-128
-
-
Kirschner, K.N.1
Lewin, A.H.2
Bowen, J.P.3
-
39
-
-
84893169025
-
The general atomic and molecular electronic structure system
-
Schmidt MW, Baldridge KK, Boatz JA, Jensen JH, Koseki S, Matsunaga N, Gordon, MS, Nguyen KA, Su S, Windus TL, Elbert ST, Montgomery J, Dupuis M. The general atomic and molecular electronic structure system. J Comput Chem 1993;14:1347-1363.
-
(1993)
J Comput Chem
, vol.14
, pp. 1347-1363
-
-
Schmidt, M.W.1
Baldridge, K.K.2
Boatz, J.A.3
Jensen, J.H.4
Koseki, S.5
Matsunaga, N.6
Gordon, M.S.7
Nguyen, K.A.8
Su, S.9
Windus, T.L.10
Elbert, S.T.11
Montgomery, J.12
Dupuis, M.13
-
40
-
-
11644266970
-
Electronic population analysis on LCAO-MO [linear combination of atomic orbital-molecular orbital] molecular wave functions. I
-
Mulliken RS. Electronic population analysis on LCAO-MO [linear combination of atomic orbital-molecular orbital] molecular wave functions. I. J Chem Phys 1955;23:1833-1840.
-
(1955)
J Chem Phys
, vol.23
, pp. 1833-1840
-
-
Mulliken, R.S.1
-
41
-
-
36849130718
-
Electronic population analysis on LCAO-MO [linear combination of atomic orbital-molecular orbital] molecular wave functions. II. Overlap populations, bond orders, and covalent bond energies
-
Mulliken RS. Electronic population analysis on LCAO-MO [linear combination of atomic orbital-molecular orbital] molecular wave functions. II. Overlap populations, bond orders, and covalent bond energies. J Chem Phys 1955;23:1841-1846.
-
(1955)
J Chem Phys
, vol.23
, pp. 1841-1846
-
-
Mulliken, R.S.1
-
42
-
-
36849131261
-
Electronic population analysis on LCAO-MO molecular-wave functions. III. Effects of hybridization on overlap and gross AO populations
-
Mulliken RS. Electronic population analysis on LCAO-MO molecular-wave functions. III. Effects of hybridization on overlap and gross AO populations. J Chem Phys 1955;23:2338-2342.
-
(1955)
J Chem Phys
, vol.23
, pp. 2338-2342
-
-
Mulliken, R.S.1
-
43
-
-
0041555242
-
Electronic population analysis on LCAO-MO molecular-wave functions. IV. Bonding and antibonding in LCAO and valence-bond theories
-
Mulliken RS. Electronic population analysis on LCAO-MO molecular-wave functions. IV. Bonding and antibonding in LCAO and valence-bond theories. J Chem Phys 1955;23:2343-2346.
-
(1955)
J Chem Phys
, vol.23
, pp. 2343-2346
-
-
Mulliken, R.S.1
-
44
-
-
33748545144
-
Influence of polarization functions on MO hydrogenation energies
-
Hariharan PC, and Pople JA. Influence of polarization functions on MO hydrogenation energies. Theoret Chim Acta 1973;28:213-222.
-
(1973)
Theoret Chim Acta
, vol.28
, pp. 213-222
-
-
Hariharan, P.C.1
Pople, J.A.2
-
45
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM Jr., Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc 1995;117:5179-5197.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
46
-
-
0025390935
-
MOPAC A semiempirical molecular orbital program
-
Stewart, JJP. MOPAC: A semiempirical molecular orbital program. J Comput-Aided Mol Des 1990;4:1-105.
-
(1990)
J Comput-Aided Mol Des
, vol.4
, pp. 1-105
-
-
Stewart, J.J.P.1
-
47
-
-
4444362233
-
-
http://www.cmbi.kun.nl/gv/servers/WIWWWI/
-
-
-
-
48
-
-
0031718310
-
Homology modeling, model and software evaluation: Three related resources
-
Rodriguez R, Chinea G, Lopez N, Pons T, Vriend G. Homology modeling, model and software evaluation: three related resources. Bioinformatics 1998;14:523-528.
-
(1998)
Bioinformatics
, vol.14
, pp. 523-528
-
-
Rodriguez, R.1
Chinea, G.2
Lopez, N.3
Pons, T.4
Vriend, G.5
-
49
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi R, Billeter M, Wüthrich K. MOLMOL: A program for display and analysis of macromolecular structures. J Mol Graph 1996;14:29-32.
-
(1996)
J Mol Graph
, vol.14
, pp. 29-32
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
|