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Volumn 66, Issue 5, 2008, Pages 472-483

Phylogenetic and structural analysis of translationally controlled tumor proteins

Author keywords

Apicomplexa; Diplomonadidae; G proteins; Parasite evolution; Protein structure; Translationally controlled tumor protein

Indexed keywords

GUANINE NUCLEOTIDE BINDING PROTEIN; TUMOR PROTEIN;

EID: 44249114015     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-008-9099-z     Document Type: Article
Times cited : (47)

References (41)
  • 2
    • 8544232810 scopus 로고    scopus 로고
    • TSAP6 facilitates the secretion of translationally controlled tumor protein/histamine-releasing factor via a nonclassical pathway
    • Amzallag N, Passer BJ, Allanic D, Segura E, Thery C, Goud B, Amson R, Telerman A (2004) TSAP6 facilitates the secretion of translationally controlled tumor protein/histamine-releasing factor via a nonclassical pathway. J Biol Chem 279:46104-46112
    • (2004) J Biol Chem , vol.279 , pp. 46104-46112
    • Amzallag, N.1    Passer, B.J.2    Allanic, D.3    Segura, E.4    Thery, C.5    Goud, B.6    Amson, R.7    Telerman, A.8
  • 3
    • 14544283723 scopus 로고    scopus 로고
    • Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data
    • Arisue N, Hasegawa M, Hashimoto T (2005) Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data. Mol Biol Evol 22:409-420
    • (2005) Mol Biol Evol , vol.22 , pp. 409-420
    • Arisue, N.1    Hasegawa, M.2    Hashimoto, T.3
  • 4
    • 0347480218 scopus 로고    scopus 로고
    • The translationally controlled tumour protein (TCTP)
    • Bommer UA, Thiele BJ (2004) The translationally controlled tumour protein (TCTP). Int J Biochem Cell Biol 36:379-385
    • (2004) Int J Biochem Cell Biol , vol.36 , pp. 379-385
    • Bommer, U.A.1    Thiele, B.J.2
  • 5
    • 0036235730 scopus 로고    scopus 로고
    • The mRNA of the translationally controlled tumor protein P23/TCTP is a highly structured RNA, which activates the dsRNA-dependent protein kinase PKR
    • Bommer UA, Borovjagin AV, Greagg MA, Jeffrey IW, Russell P, Laing KG, Lee M, Clemens MJ (2002) The mRNA of the translationally controlled tumor protein P23/TCTP is a highly structured RNA, which activates the dsRNA-dependent protein kinase PKR. RNA 8:478-496
    • (2002) RNA , vol.8 , pp. 478-496
    • Bommer, U.A.1    Borovjagin, A.V.2    Greagg, M.A.3    Jeffrey, I.W.4    Russell, P.5    Laing, K.G.6    Lee, M.7    Clemens, M.J.8
  • 6
    • 34347391544 scopus 로고    scopus 로고
    • A knockout mouse approach reveals that TCTP functions as an essential factor for cell proliferation and survival in a tissue- or cell type-specific manner
    • Chen SH, Wu PS, Chou CH, Yan YT, Liu H, Weng SY, Yang-Yen HF (2007) A knockout mouse approach reveals that TCTP functions as an essential factor for cell proliferation and survival in a tissue- or cell type-specific manner. Mol Biol Cell 18:2525-2532
    • (2007) Mol Biol Cell , vol.18 , pp. 2525-2532
    • Chen, S.H.1    Wu, P.S.2    Chou, C.H.3    Yan, Y.T.4    Liu, H.5    Weng, S.Y.6    Yang-Yen, H.F.7
  • 7
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • Dayhoff MO (ed) Natl Biomed Res Found, Washington, DC
    • Dayhoff MO, Schwartz RM, Orcutt BC (1978) A model of evolutionary change in proteins. In: Dayhoff MO (ed) Atlas of Protein Sequence and Structure, vol 5, suppl 3. Natl Biomed Res Found, Washington, DC, pp 345-352
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.SUPPL. 3 , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 9
    • 0000122573 scopus 로고
    • PHYLIP-Phylogeny Inference Package (version 3.66)
    • Felsenstein J (1989) PHYLIP-Phylogeny Inference Package (version 3.66). Cladistics 5:164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 10
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman D, Argos P (1995) Knowledge-based protein secondary structure assignment. Proteins 23:566-579
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2
  • 11
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 12
    • 0037197743 scopus 로고    scopus 로고
    • Molecular characterization of a calcium binding translationally controlled tumor protein homologue from the filarial parasites Brugia malayi and Wuchereria bancrofti
    • Gnanasekar M, Rao KV, Chen L, Narayanan RB, Geetha M, Scott AL, Ramaswamy K, Kaliraj P (2002) Molecular characterization of a calcium binding translationally controlled tumor protein homologue from the filarial parasites Brugia malayi and Wuchereria bancrofti. Mol Biochem Parasitol 121:107-118
    • (2002) Mol Biochem Parasitol , vol.121 , pp. 107-118
    • Gnanasekar, M.1    Rao, K.V.2    Chen, L.3    Narayanan, R.B.4    Geetha, M.5    Scott, A.L.6    Ramaswamy, K.7    Kaliraj, P.8
  • 13
    • 0028153888 scopus 로고
    • Protein phylogeny gives a robust estimation for early divergences of eukaryotes: Phylogenetic place of a mitochondria-lacking protozoan, Giardia lamblia
    • Hashimoto T, Nakamura Y, Nakamura F, Shirakura T, Adachi J, Goto N, Okamoto K, Hasegawa M (1994) Protein phylogeny gives a robust estimation for early divergences of eukaryotes: phylogenetic place of a mitochondria-lacking protozoan, Giardia lamblia. Mol Biol Evol 11:65-71
    • (1994) Mol Biol Evol , vol.11 , pp. 65-71
    • Hashimoto, T.1    Nakamura, Y.2    Nakamura, F.3    Shirakura, T.4    Adachi, J.5    Goto, N.6    Okamoto, K.7    Hasegawa, M.8
  • 14
    • 44249121804 scopus 로고    scopus 로고
    • Differential accumulation of a translationally controlled tumor protein mRNA from Cucurbita maxima in response to CMV infection
    • F Sanchez C Quinto IM Lopez-Lara O Geiger (eds) International Society for Molecular Plant-Microbe Interactions St Paul, MN
    • Hinojosa-Moya JJ, Xoconostle-Cázares B, Lucas WJ, Ruiz-Medrano R (2006) Differential accumulation of a translationally controlled tumor protein mRNA from Cucurbita maxima in response to CMV infection. In: F Sanchez C Quinto IM Lopez-Lara O Geiger (eds) Biology of plant microbe interactions, vol 5. International Society for Molecular Plant-Microbe Interactions, St Paul, MN, pp 242-246
    • (2006) Biology of Plant Microbe Interactions , vol.5 , pp. 242-246
    • Hinojosa-Moya, J.J.1    Xoconostle-Cázares, B.2    Lucas, W.J.3    Ruiz-Medrano, R.4
  • 15
    • 33847174115 scopus 로고    scopus 로고
    • Drosophila TCTP is essential for growth and proliferation through regulation of dRheb GTPase
    • Hsu YC, Chern JJ, Cai Y, Liu M, Choi KW (2007) Drosophila TCTP is essential for growth and proliferation through regulation of dRheb GTPase. Nature 445:785-788
    • (2007) Nature , vol.445 , pp. 785-788
    • Hsu, Y.C.1    Chern, J.J.2    Cai, Y.3    Liu, M.4    Choi, K.W.5
  • 16
    • 0343337581 scopus 로고    scopus 로고
    • Molecular identification of IgE-dependent histamine-releasing factor as a B cell growth factor
    • Kang HS, Lee MJ, Song H, Han SH, Kim YM, Im JY, Choi I (2001) Molecular identification of IgE-dependent histamine-releasing factor as a B cell growth factor. J Immunol 166:6545-6554
    • (2001) J Immunol , vol.166 , pp. 6545-6554
    • Kang, H.S.1    Lee, M.J.2    Song, H.3    Han, S.H.4    Kim, Y.M.5    Im, J.Y.6    Choi, I.7
  • 17
    • 0027169515 scopus 로고
    • Main-chain bond lengths and bond angles in protein structures
    • Laskowski RA, Moss DS, Thornton JM (1993) Main-chain bond lengths and bond angles in protein structures. J Mol Biol 231:1049-1067
    • (1993) J Mol Biol , vol.231 , pp. 1049-1067
    • Laskowski, R.A.1    Moss, D.S.2    Thornton, J.M.3
  • 18
    • 0035861647 scopus 로고    scopus 로고
    • Characterization of fortilin, a novel antiapoptotic protein
    • Li F, Zhang D, Fujise K (2001) Characterization of fortilin, a novel antiapoptotic protein. J Biol Chem 276:47542-47549
    • (2001) J Biol Chem , vol.276 , pp. 47542-47549
    • Li, F.1    Zhang, D.2    Fujise, K.3
  • 19
    • 16244384614 scopus 로고    scopus 로고
    • Stabilization and enhancement of the antiapoptotic activity of mcl-1 by TCTP
    • Liu H, Peng HW, Cheng YS, Yuan HS, Yang-Yen HF (2005) Stabilization and enhancement of the antiapoptotic activity of mcl-1 by TCTP. Mol Cell Biol 25:3117-3126
    • (2005) Mol Cell Biol , vol.25 , pp. 3117-3126
    • Liu, H.1    Peng, H.W.2    Cheng, Y.S.3    Yuan, H.S.4    Yang-Yen, H.F.5
  • 20
    • 0028982775 scopus 로고
    • Molecular identification of an IgE-dependent histamine-releasing factor
    • MacDonald SM, Rafnar T, Langdon J, Lichtenstein LM (1995) Molecular identification of an IgE-dependent histamine-releasing factor. Science 269:688-690
    • (1995) Science , vol.269 , pp. 688-690
    • MacDonald, S.M.1    Rafnar, T.2    Langdon, J.3    Lichtenstein, L.M.4
  • 22
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin LJ, Bryson K, Jones DT (2000) The PSIPRED protein structure prediction server. Bioinformatics 16:404-405
    • (2000) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 23
    • 34249698083 scopus 로고    scopus 로고
    • Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata
    • Moreira D, von der Heyden S, Bass D, Lopez-Garcia P, Chao E, Cavalier-Smith T (2007) Global eukaryote phylogeny: combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata. Mol Phylogenet Evol 44:255-266
    • (2007) Mol Phylogenet Evol , vol.44 , pp. 255-266
    • Moreira, D.1    Von Der Heyden, S.2    Bass, D.3    Lopez-Garcia, P.4    Chao, E.5    Cavalier-Smith, T.6
  • 24
    • 28444450535 scopus 로고    scopus 로고
    • The molecular and biological analysis of ixodid ticks histamine release factors
    • Mulenga A, Azad AF (2005) The molecular and biological analysis of ixodid ticks histamine release factors. Exp Appl Acarol 37:215-229
    • (2005) Exp Appl Acarol , vol.37 , pp. 215-229
    • Mulenga, A.1    Azad, A.F.2
  • 26
    • 0032032572 scopus 로고    scopus 로고
    • Dark-induced accumulation of mRNA for a homolog of translationally controlled tumor protein (TCTP) in Pharbitis
    • Sage-Ono K, Ono M, Harada H, Kamada H (1998) Dark-induced accumulation of mRNA for a homolog of translationally controlled tumor protein (TCTP) in Pharbitis. Plant Cell Physiol 39:357-360
    • (1998) Plant Cell Physiol , vol.39 , pp. 357-360
    • Sage-Ono, K.1    Ono, M.2    Harada, H.3    Kamada, H.4
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 28
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali A, Blundell TL (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234:779-815
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 29
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 30
    • 0024962760 scopus 로고
    • Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA from Giardia lamblia
    • Sogin ML, Gunderson JH, Elwood HJ, Alonso RA, Peattie DA (1989) Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia. Science 243:75-77
    • (1989) Science , vol.243 , pp. 75-77
    • Sogin, M.L.1    Gunderson, J.H.2    Elwood, H.J.3    Alonso, R.A.4    Peattie, D.A.5
  • 31
    • 0037025197 scopus 로고    scopus 로고
    • Rooting the eukaryote tree by using a derived gene fusion
    • Stechmann A, Cavalier-Smith T (2002) Rooting the eukaryote tree by using a derived gene fusion. Science 297:89-91
    • (2002) Science , vol.297 , pp. 89-91
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 32
    • 0029836454 scopus 로고    scopus 로고
    • A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) A quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 33
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 10.1093/molbev/msm092
    • (2007) Mol Biol Evol
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 35
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 38
    • 23444451601 scopus 로고    scopus 로고
    • Evolution and expression of translationally controlled tumour protein (TCTP) of fish
    • Venugopal T (2005) Evolution and expression of translationally controlled tumour protein (TCTP) of fish. Comp Biochem Physiol B Biochem Mol Biol 142:8-17
    • (2005) Comp Biochem Physiol B Biochem Mol Biol , vol.142 , pp. 8-17
    • Venugopal, T.1
  • 39
    • 0031015293 scopus 로고    scopus 로고
    • Phylogenetic position of the mitochondrion-lacking protozoan Trichomonas tenax, based on amino acid sequences of elongation factors 1α and 2
    • Yamamoto A, Hashimoto T, Asaga E, Hasegawa M, Goto N (1997) Phylogenetic position of the mitochondrion-lacking protozoan Trichomonas tenax, based on amino acid sequences of elongation factors 1α and 2. J Mol Evol 144:98-105
    • (1997) J Mol Evol , vol.144 , pp. 98-105
    • Yamamoto, A.1    Hashimoto, T.2    Asaga, E.3    Hasegawa, M.4    Goto, N.5
  • 41
    • 0036334279 scopus 로고    scopus 로고
    • Plk phosphorylation regulates the microtubule-stabilizing protein TCTP
    • Yarm FR (2002) Plk phosphorylation regulates the microtubule-stabilizing protein TCTP. Mol Cell Biol 22:6209-6221
    • (2002) Mol Cell Biol , vol.22 , pp. 6209-6221
    • Yarm, F.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.