-
1
-
-
0024082546
-
The input output complexity of sorting and related problems
-
Aggarwal,A. and Vitter,J.S. (1988) The input output complexity of sorting and related problems. Commun. ACM, 31, 1116-1127.
-
(1988)
Commun. ACM
, vol.31
, pp. 1116-1127
-
-
Aggarwal, A.1
Vitter, J.S.2
-
2
-
-
34848819400
-
Comparative evaluation of tandem ms search algorithms using a target-decoy search strategy
-
Balgley,B.M. et al. (2007) Comparative evaluation of tandem ms search algorithms using a target-decoy search strategy. Mol. Cell Proteomics.
-
(2007)
Mol. Cell Proteomics
-
-
Balgley, B.M.1
-
4
-
-
0035346719
-
Interrogating the human genome using uninterpreted mass spectrometry data
-
Choudhary,S. et al. (2001) Interrogating the human genome using uninterpreted mass spectrometry data. Proteomics, 1, 651-667.
-
(2001)
Proteomics
, vol.1
, pp. 651-667
-
-
Choudhary, S.1
-
5
-
-
3042735333
-
High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics
-
Colinge,J. et al. (2004) High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics. Proteomics, 4, 1977-1984.
-
(2004)
Proteomics
, vol.4
, pp. 1977-1984
-
-
Colinge, J.1
-
6
-
-
14844329057
-
Experiments in searching small proteins in unannotated large eukaryotic genomes
-
Colinge, J. et al. (2005) Experiments in searching small proteins in unannotated large eukaryotic genomes. J. Proteome Res., 4 167-174.
-
(2005)
J. Proteome Res
, vol.4
, pp. 167-174
-
-
Colinge, J.1
-
7
-
-
0141955057
-
A method for reducing the time required to match protein sequences with tandem mass spectra
-
Craig,R. and Beavis,R.C. (2003) A method for reducing the time required to match protein sequences with tandem mass spectra. Rapid Commun. Mass Spectrom., 17, 2310-2316.
-
(2003)
Rapid Commun. Mass Spectrom
, vol.17
, pp. 2310-2316
-
-
Craig, R.1
Beavis, R.C.2
-
8
-
-
3142702204
-
Tandem: Matching proteins with tandem mass spectra
-
Craig,R. and Beavis,R.C. (2004) Tandem: Matching proteins with tandem mass spectra. Bioinformatics, 20, 1466-1467.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
9
-
-
33645813378
-
Mass spectrometry and protein analysis
-
Domon,B. and Aebersold,R. (2006) Mass spectrometry and protein analysis. Science, 312, 212-217.
-
(2006)
Science
, vol.312
, pp. 212-217
-
-
Domon, B.1
Aebersold, R.2
-
10
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias,J.E. and Gygi,S.P. (2007) Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods, 4, 207-214.
-
(2007)
Nat. Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
11
-
-
24044513966
-
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
-
Elias,J.E. et al. (2005) Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat. Methods, 2, 667-675.
-
(2005)
Nat. Methods
, vol.2
, pp. 667-675
-
-
Elias, J.E.1
-
12
-
-
0000857494
-
An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
-
Eng,J.K. et al. (1994) An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. J. Am. Soc. Mass Spectrom., 5, 976-989.
-
(1994)
J. Am. Soc. Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
-
13
-
-
33748201234
-
Semi-supervised lc/ms alignment for differential proteomics
-
Fischer,B. et al. (2006) Semi-supervised lc/ms alignment for differential proteomics. Bioinformatics, 22, e132-e140.
-
(2006)
Bioinformatics
, vol.22
-
-
Fischer, B.1
-
14
-
-
0041589538
-
Eugene's hom: A generic similarity-based gene finder using multiple homologous sequences
-
Foissac,S. et al. (2003) Eugene's hom: A generic similarity-based gene finder using multiple homologous sequences. Nucleic Acids Res 31, 3742-3745.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3742-3745
-
-
Foissac, S.1
-
16
-
-
23944451618
-
An evaluation, comparison, and accurate benchmarking of several publicly available ms/ms search algorithms: Sensitivity and specificity analysis
-
Kapp,E.A. et al. (2005) An evaluation, comparison, and accurate benchmarking of several publicly available ms/ms search algorithms: sensitivity and specificity analysis. Proteomics, 5, 3475-3490.
-
(2005)
Proteomics
, vol.5
, pp. 3475-3490
-
-
Kapp, E.A.1
-
17
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications, made by ms/ms and database search
-
Keller,A. et al. (2002) Empirical statistical model to estimate the accuracy of peptide identifications, made by ms/ms and database search. Anal. Chem., 74, 5383-5392.
-
(2002)
Anal. Chem
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
-
18
-
-
0035350894
-
Mass spectrometry allows direct identification of proteins in large genomes
-
Kuster,B. et al. (2001) Mass spectrometry allows direct identification of proteins in large genomes. Proteomics, 1, 641-650.
-
(2001)
Proteomics
, vol.1
, pp. 641-650
-
-
Kuster, B.1
-
19
-
-
33750979860
-
General framework for developing and evaluating database scoring algorithms using the tandem search engine
-
Maclean,B. et al. (2006) General framework for developing and evaluating database scoring algorithms using the tandem search engine. Bioinformatics.
-
(2006)
Bioinformatics
-
-
Maclean, B.1
-
20
-
-
0036796369
-
Current methods of gene prediction, their strengths and weaknesses
-
Mathe,C. et al. (2002) Current methods of gene prediction, their strengths and weaknesses. Nucleic Acids Res., 30, 4103-4117.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4103-4117
-
-
Mathe, C.1
-
21
-
-
33645708138
-
Dynamic spectrum quality assessment and iterative computation analysis of shotgun proteomic data: Toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides
-
Nesvizhskii,A.I. et al. (2006) Dynamic spectrum quality assessment and iterative computation analysis of shotgun proteomic data: Toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides. Mol. Cell Proteomics, 5; 652-70.
-
(2006)
Mol. Cell Proteomics
, vol.5
, pp. 652-670
-
-
Nesvizhskii, A.I.1
-
22
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins,D.N. et al. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
-
23
-
-
36448957692
-
Peptide assignment validation: Telling what's wrong without actually knowing what's right
-
Thesis ETH
-
Pletscher,P. et al. (2006) Peptide assignment validation: Telling what's wrong without actually knowing what's right. Semester Thesis ETH.
-
(2006)
Semester
-
-
Pletscher, P.1
-
25
-
-
0043064042
-
A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases
-
Sadygov,R.G., and Yates,J.R., r. (2003) A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases. Anal. Chem., 75 3792-3798.
-
(2003)
Anal. Chem
, vol.75
, pp. 3792-3798
-
-
Sadygov, R.G.1
Yates, J.R.R.2
-
26
-
-
18744398125
-
Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book
-
Sadygov,R.G. et al. (2004) Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book. Nat. Methods, 1, 195-202.
-
(2004)
Nat. Methods
, vol.1
, pp. 195-202
-
-
Sadygov, R.G.1
-
27
-
-
0029645432
-
-
Yates,J.R., r. et al. (1995) Mining genomes: Correlating tandem mass spectra of modified and unmodefied peptides to sequences in nucleotide databases. Anal. Chem, 67, 3202-10.
-
Yates,J.R., r. et al. (1995) Mining genomes: Correlating tandem mass spectra of modified and unmodefied peptides to sequences in nucleotide databases. Anal. Chem, 67, 3202-10.
-
-
-
|