메뉴 건너뛰기




Volumn 51, Issue 6, 2008, Pages 552-559

Complicated evolutionary patterns of microRNAs in vertebrates

Author keywords

Evolution; Lineage specific duplication; MicroRNA; miRNA:miRNA* interconversion

Indexed keywords

MICRORNA;

EID: 44049107810     PISSN: 10069305     EISSN: 18622798     Source Type: Journal    
DOI: 10.1007/s11427-008-0075-z     Document Type: Article
Times cited : (3)

References (37)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • 2
    • Bartel D P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 2004, 116(2): 281-297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • 5
    • Lee R C, Feinbaum R L, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 1993, 75(5): 843-854
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 3
    • 33644750115 scopus 로고    scopus 로고
    • MiRBase: MicroRNA sequences, targets and gene nomenclature
    • Griffiths-Jones S, Grocock R J, van Dongen S, et al. MiRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 2006, 34(Database issue): D140-D144
    • (2006) Nucleic Acids Res , vol.34
    • Griffiths-Jones, S.1    Grocock, R.J.2    Van Dongen, S.3
  • 4
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • 7006
    • Ambros V. The functions of animal microRNAs. Nature, 2004, 431(7006): 350-355
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 5
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: Small RNAs with a big role in gene regulation
    • 7
    • He L, Hannon G J. MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 2004, 5(7): 522-531
    • (2004) Nat Rev Genet , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 6
    • 18044377963 scopus 로고    scopus 로고
    • Principles of microRNA-target recognition
    • 3
    • Brennecke J, Stark A, Russell R B, et al. Principles of microRNA-target recognition. PLoS Biol, 2005, 3(3): e85
    • (2005) PLoS Biol , vol.3 , pp. 85
    • Brennecke, J.1    Stark, A.2    Russell, R.B.3
  • 7
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • 1
    • Lewis B P, Burge C B, Bartel D P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 2005, 120(1): 15-20
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 8
    • 29444457713 scopus 로고    scopus 로고
    • Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function
    • 1
    • Pang K C, Frith M C, Mattick J S. Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function. Trends Genet, 2006, 22(1): 1-5
    • (2006) Trends Genet , vol.22 , pp. 1-5
    • Pang, K.C.1    Frith, M.C.2    Mattick, J.S.3
  • 9
    • 33644772270 scopus 로고    scopus 로고
    • The expansion of the metazoan microRNA repertoire
    • Hertel J, Lindemeyer M, Missal K, et al. The expansion of the metazoan microRNA repertoire. BMC Genomics, 2006, 7: 25
    • (2006) BMC Genomics , vol.7 , pp. 25
    • Hertel, J.1    Lindemeyer, M.2    Missal, K.3
  • 10
    • 33845608152 scopus 로고    scopus 로고
    • The phylogenetic distribution of metazoan microRNAs: Insights into evolutionary complexity and constraint
    • 6
    • Sempere L F, Cole C N, McPeek M A, et al. The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J Exp Zoolog B Mol Dev Evol, 2006, 306(6): 575-588
    • (2006) J Exp Zoolog B Mol Dev Evol , vol.306 , pp. 575-588
    • Sempere, L.F.1    Cole, C.N.2    McPeek, M.A.3
  • 11
    • 2342450524 scopus 로고    scopus 로고
    • Molecular evolution of a microRNA cluster
    • 2
    • Tanzer A, Stadler P F. Molecular evolution of a microRNA cluster. J Mol Biol, 2004, 339(2): 327-335
    • (2004) J Mol Biol , vol.339 , pp. 327-335
    • Tanzer, A.1    Stadler, P.F.2
  • 12
    • 14844298721 scopus 로고    scopus 로고
    • Evolution of microRNAs located within Hox gene clusters
    • 1
    • Tanzer A, Amemiya C T, Kim C B, et al. Evolution of microRNAs located within Hox gene clusters. J Exp Zoolog B Mol Dev Evol, 2005, 304(1): 75-85
    • (2005) J Exp Zoolog B Mol Dev Evol , vol.304 , pp. 75-85
    • Tanzer, A.1    Amemiya, C.T.2    Kim, C.B.3
  • 13
    • 33645509923 scopus 로고    scopus 로고
    • Evolution of Arabidopsis microRNA families through duplication events
    • 4
    • Maher C, Stein L, Ware D. Evolution of Arabidopsis microRNA families through duplication events. Genome Res, 2006, 16(4): 510-519
    • (2006) Genome Res , vol.16 , pp. 510-519
    • Maher, C.1    Stein, L.2    Ware, D.3
  • 14
    • 18244385475 scopus 로고    scopus 로고
    • MicroRNAs regulate brain morphogenesis in zebrafish
    • 5723
    • Giraldez A J, Cinalli R M, Glasner M E, et al. MicroRNAs regulate brain morphogenesis in zebrafish. Science, 2005, 308(5723): 833-838
    • (2005) Science , vol.308 , pp. 833-838
    • Giraldez, A.J.1    Cinalli, R.M.2    Glasner, M.E.3
  • 15
    • 24644476482 scopus 로고    scopus 로고
    • MicroRNA identification based on sequence and structure alignment
    • 18
    • Wang X, Zhang J, Li F, et al. MicroRNA identification based on sequence and structure alignment. Bioinformatics, 2005, 21(18): 3610-3614
    • (2005) Bioinformatics , vol.21 , pp. 3610-3614
    • Wang, X.1    Zhang, J.2    Li, F.3
  • 17
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 22
    • Thompson J D, Higgins D G, Gibson T J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res, 1994, 22(22): 4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 18
    • 2942534403 scopus 로고    scopus 로고
    • Human embryonic stem cells express a unique set of microRNAs
    • 2
    • Suh M R, Lee Y, Kim J Y, et al. Human embryonic stem cells express a unique set of microRNAs. Dev Biol, 2004, 270(2): 488-498
    • (2004) Dev Biol , vol.270 , pp. 488-498
    • Suh, M.R.1    Lee, Y.2    Kim, J.Y.3
  • 19
    • 33645674386 scopus 로고    scopus 로고
    • Developmental biology. Mixed messages in early development
    • 5770
    • Cohen S M, Brennecke J. Developmental biology. Mixed messages in early development. Science, 2006, 312(5770): 65-66
    • (2006) Science , vol.312 , pp. 65-66
    • Cohen, S.M.1    Brennecke, J.2
  • 20
    • 20444467290 scopus 로고    scopus 로고
    • A microRNA polycistron as a potential human oncogene
    • 7043
    • He L, Thomson J M, Hemann M T, et al. A microRNA polycistron as a potential human oncogene. Nature, 2005, 435(7043): 828-833
    • (2005) Nature , vol.435 , pp. 828-833
    • He, L.1    Thomson, J.M.2    Hemann, M.T.3
  • 21
    • 20444479428 scopus 로고    scopus 로고
    • C-Myc-regulated microRNAs modulate E2F1 expression
    • 7043
    • O'Donnell K A, Wentzel E A, Zeller K I, et al. c-Myc-regulated microRNAs modulate E2F1 expression. Nature, 2005, 435(7043): 839-843
    • (2005) Nature , vol.435 , pp. 839-843
    • O'Donnell, K.A.1    Wentzel, E.A.2    Zeller, K.I.3
  • 22
    • 33646056975 scopus 로고    scopus 로고
    • A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular germ cell tumors
    • 6
    • Voorhoeve P M, le Sage C, Schrier M, et al. A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular germ cell tumors. Cell, 2006, 124(6): 1169-1181
    • (2006) Cell , vol.124 , pp. 1169-1181
    • Voorhoeve, P.M.1    Le Sage, C.2    Schrier, M.3
  • 23
    • 20944450160 scopus 로고    scopus 로고
    • Combinatorial microRNA target predictions
    • 5
    • Krek A, Grun D, Poy M N, et al. Combinatorial microRNA target predictions. Nat Genet, 2005, 37(5): 495-500
    • (2005) Nat Genet , vol.37 , pp. 495-500
    • Krek, A.1    Grun, D.2    Poy, M.N.3
  • 25
    • 23644450595 scopus 로고    scopus 로고
    • Characterization of a highly variable eutherian microRNA gene
    • 8
    • Houbaviy H B, Dennis L, Jaenisch R, et al. Characterization of a highly variable eutherian microRNA gene. RNA, 2005, 11(8): 1245-1257
    • (2005) RNA , vol.11 , pp. 1245-1257
    • Houbaviy, H.B.1    Dennis, L.2    Jaenisch, R.3
  • 26
    • 22844440427 scopus 로고    scopus 로고
    • Identification of hundreds of conserved and nonconserved human microRNAs
    • 7
    • Bentwich I, Avniel A, Karov Y, et al. Identification of hundreds of conserved and nonconserved human microRNAs. Nat Genet, 2005, 37(7): 766-770
    • (2005) Nat Genet , vol.37 , pp. 766-770
    • Bentwich, I.1    Avniel, A.2    Karov, Y.3
  • 27
    • 11844283981 scopus 로고    scopus 로고
    • Stage-specific expression of microRNAs during Xenopus development
    • 2
    • Watanabe T, Takeda A, Mise K, et al. Stage-specific expression of microRNAs during Xenopus development. FEBS Lett, 2005, 579(2): 318-324
    • (2005) FEBS Lett , vol.579 , pp. 318-324
    • Watanabe, T.1    Takeda, A.2    Mise, K.3
  • 28
    • 22344449952 scopus 로고    scopus 로고
    • The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    • 11
    • Chen P Y, Manninga H, Slanchev K, et al. The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes Dev, 2005, 19(11): 1288-1293
    • (2005) Genes Dev , vol.19 , pp. 1288-1293
    • Chen, P.Y.1    Manninga, H.2    Slanchev, K.3
  • 29
    • 33645124258 scopus 로고    scopus 로고
    • Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
    • 5770
    • Giraldez A J, Mishima Y, Rihel J, et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science, 2006, 312(5770): 75-79
    • (2006) Science , vol.312 , pp. 75-79
    • Giraldez, A.J.1    Mishima, Y.2    Rihel, J.3
  • 30
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • 6945
    • Levine M, Tjian R. Transcription regulation and animal diversity. Nature, 2003, 424(6945): 147-151
    • (2003) Nature , vol.424 , pp. 147-151
    • Levine, M.1    Tjian, R.2
  • 32
    • 1642540283 scopus 로고    scopus 로고
    • Complementary miRNA pairs suggest a regulatory role for miRNA: MiRNA duplexes
    • 2
    • Lai E C, Wiel C, Rubin G M. Complementary miRNA pairs suggest a regulatory role for miRNA: miRNA duplexes. RNA, 2004, 10(2): 171-175
    • (2004) RNA , vol.10 , pp. 171-175
    • Lai, E.C.1    Wiel, C.2    Rubin, G.M.3
  • 33
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • 2
    • Khvorova A, Reynolds A, Jayasena S D. Functional siRNAs and miRNAs exhibit strand bias. Cell, 2003, 115(2): 209-216
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 34
    • 10744225153 scopus 로고    scopus 로고
    • Asymmetry in the assembly of the RNAi enzyme complex
    • 2
    • Schwarz D S, Hutvagner G, Du T, et al. Asymmetry in the assembly of the RNAi enzyme complex. Cell, 2003, 115(2): 199-208
    • (2003) Cell , vol.115 , pp. 199-208
    • Schwarz, D.S.1    Hutvagner, G.2    Du, T.3
  • 35
    • 18344369543 scopus 로고    scopus 로고
    • MicroRNA biogenesis: Coordinated cropping and dicing
    • 5
    • Kim V N. MicroRNA biogenesis: Coordinated cropping and dicing. Nat Rev Mol Cell Biol, 2005, 6(5): 376-385
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 376-385
    • Kim, V.N.1
  • 36
    • 33751548288 scopus 로고    scopus 로고
    • Diversity of microRNAs in human and chimpanzee brain
    • 12
    • Berezikov E, Thuemmler F, van Laake L W, et al. Diversity of microRNAs in human and chimpanzee brain. Nat Genet, 2006, 38(12): 1375-1377
    • (2006) Nat Genet , vol.38 , pp. 1375-1377
    • Berezikov, E.1    Thuemmler, F.2    Van Laake, L.W.3
  • 37
    • 29144505309 scopus 로고    scopus 로고
    • The widespread impact of mammalian MicroRNAs on mRNA repression and evolution
    • 5755
    • Farh K K, Grimson A, Jan C, et al. The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science, 2005, 310(5755): 1817-1821
    • (2005) Science , vol.310 , pp. 1817-1821
    • Farh, K.K.1    Grimson, A.2    Jan, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.