Differential gene expression of rice two-component signaling elements during reproductive development and regulation by abiotic stress

Functional and Integrative Genomics

Volumn 8, Issue 2, 2008, Pages 175-180

  Jain, Mukesh ^a   Tyagi, Akhilesh K ^a   Khurana, Jitendra P ^a  

^a UNIVERSITY OF DELHI   (India)

Author keywords

Abiotic stress; Expression profiling; Oryza sativa (rice); Reproductive development; Two component signaling elements

Indexed keywords

ABIOTIC STRESS; ARTICLE; CONTROLLED STUDY; DEVELOPMENTAL STAGE; EMBRYO DEVELOPMENT; ENDOSPERM; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC DIFFERENCE; MICROARRAY ANALYSIS; NONHUMAN; PLANT DEVELOPMENT; PRIORITY JOURNAL; RICE; SEED DEVELOPMENT; SIGNAL TRANSDUCTION; VEGETATIVE STAGE;

ENVIRONMENT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; ORYZA SATIVA; REPRODUCTION; SIGNAL TRANSDUCTION;

ORYZA SATIVA;

EID: 41149181428     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-007-0063-6     Document Type: Article

References (31)

1. Anderson A, Hudson M, Chen W, Zhu T (2003) Identification of nutrient partitioning genes participating in rice grain filling by singular value decomposition (SVD) of genome expression data. BMC Genomics 4:26
2. Gattolin S, Alandete-Saez M, Elliott K, Gonzalez-Carranza Z, Naomab E, Powell C, Roberts JA (2006) Spatial and temporal expression of the response regulators ARR22 and ARR24 in Arabidopsis thaliana. J Exp Bot 57:4225-4233
3. Grefen C, Harter K (2004) Plant two-component systems: Principles, functions, complexity and cross talk. Planta 219:733-742
4. Heyl A, Schmulling T (2003) Cytokinin signal perception and transduction. Curr Opin Plant Biol 6:480-488
5. Higuchi M, Pischke MS, Mahonen AP, Miyawaki K, Hashimoto Y, Seki M, Kobayashi M, Shinozaki K, Kato T, Tabata S, Helariutta Y, Sussman MR, Kakimoto T (2004) In planta functions of the Arabidopsis cytokinin receptor family. Proc Natl Acad Sci U S A 101:8821-8826
6. Hutchison CE, Kieber JJ (2002) Cytokinin signaling in Arabidopsis. Plant Cell Suppl 14:S47-S59
7. Hutchison CE, Li J, Argueso C, Gonzalez M, Lee E, Lewis MW, Maxwell BB, Perdue TD, Schaller GE, Alonso JM, Ecker JR, Kieber JJ (2006) The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling. Plant Cell 18:3073-3087
8. Hwang I, Chen HC, Sheen J (2002) Two-component signal transduction pathways in Arabidopsis. Plant Physiol 129:500-515
9. International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:793-800
10. Ito Y, Kurata N (2006) Identification and characterization of cytokinin-signalling gene families in rice. Gene 382:57-65
11. Itoh J, Nonomura K, Ikeda K, Yamaki S, Inukai Y, Yamagishi H, Kitano H, Nagato Y (2005) Rice plant development: From zygote to spikelet. Plant Cell Physiol 46:23-47
12. Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol 143:1467-1483
13. Jain M, Tyagi AK, Khurana JP (2006) Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa). BMC Plant Biol 6:1
14. Kakimoto T (2003) Perception and signal transduction of cytokinins. Annu Rev Plant Biol 54:605-627
15. Lohrmann J, Harter K (2002) Plant two-component signaling systems and the role of response regulators. Plant Physiol 128:363-369
16. Mason MG, Li J, Mathews DE, Kieber JJ, Schaller GE (2004) Type-B response regulators display overlapping expression patterns in Arabidopsis. Plant Physiol 135:927-937
17. Nishimura C, Ohashi Y, Sato S, Kato T, Tabata S, Ueguchi C (2004) Histidine kinase homologs that act as cytokinin receptors possess overlapping functions in the regulation of shoot and root growth in Arabidopsis. Plant Cell 16:1365-1377
18. Oka A, Sakai H, Iwakoshi S (2002) His-Asp phosphorelay signal transduction in higher plants: Receptors and response regulators for cytokinin signaling in Arabidopsis thaliana. Genes Genet Syst 77:383-391
19. Pareek A, Singh A, Kumar M, Kushwaha HR, Lynn AM, Singla-Pareek SL (2006) Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis. Plant Physiol 142:380-397
20. Riefler M, Novak O, Strnad M, Schmulling T (2006) Arabidopsis cytokinin receptor mutants reveal functions in shoot growth, leaf senescence, seed size, germination, root development, and cytokinin metabolism. Plant Cell 18:40-54
21. Schaller GE, Doi K, Hwang I, Kieber JJ, Khurana JP, Kurata N, Mizuno T, Pareek A, Shiu SH, Wu P, Yip WK (2007) Nomenclature for two-component signaling elements of rice. Plant Physiol 143:555-557
22. Schaller GE, Mathews DE, Gribskov M, Walker JC (2002) Two component signaling elements and histidyl-aspartyl phosphorelays. In: Somerville C, Meyerowitz E (eds) The Arabidopsis Book. American Society of Plant Biologists, Rockville, MD, pp 1-9
23. Stock AM, Robinson VL, Goudreau PN (2000) Two-component signal transduction. Annu Rev Biochem 69:183-215
24. Tajima Y, Imamura A, Kiba T, Amano Y, Yamashino T, Mizuno T (2004) Comparative studies on the type-B response regulators revealing their distinctive properties in the His-to-Asp phosphorelay signal transduction of Arabidopsis thaliana. Plant Cell Physiol 45:28-39
25. Thorne JH (1985) Phloem unloading of C and N assimilates in developing seeds. Annu Rev Plant Physiol 36:317-343
26. To JP, Haberer G, Ferreira FJ, Deruere J, Mason MG, Schaller GE, Alonso JM, Ecker JR, Kieber JJ (2004) Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. Plant Cell 2004 16:658-671
27. Urao T, Yakubov B, Satoh R, Yamaguchi-Shinozaki K, Seki M, Hiryama T, Shinozaki K (1999) A transmembrane hybrid-type histidine kinase in Arabidopsis functions as an osmosensor. Plant Cell 11:1743-1754
28. Urao T, Yakubov B, Yamaguchi-Shinozaki K, Shinozaki K (1998) Stress-responsive expression of genes for two-component response regulator-like proteins in Arabidopsis thaliana. FEBS Lett 427:175-178
29. Weijers D, Benkova E, Jager KE, Schlereth A, Hamann T, Kientz M, Wilmoth JC, Reed JW, Jurgens G (2005) Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. EMBO J 24:1874-1885
30. West AH, Stock AM (2001) Histidine kinases and response regulator proteins in two-component signaling systems. Trends Biochem Sci 26:369-376
31. Whitelaw C, Paul W, Jenkins E, Taylor V, Roberts J (1999) An mRNA encoding a response regulator protein from Brassica napus is up-regulated during pod development. J Exp Bot 50:335-341