-
1
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, Parker H, Prednis L, Ansari Y, Choy N, Deen H, Geralt M, Hazari N, Hom E, Karnes M, Mulholland C, Ndubaku R, Schmidt I, Guzman P, Aguilar-Henonin L, Schmid M, Weigel D, Carter DE, Marchand T, Risseeuw E, Brogden D, Zeko A, Crosby WL, Berry CC, Ecker JR (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301:653-657
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
Gadrinab, C.11
Heller, C.12
Jeske, A.13
Koesema, E.14
Meyers, C.C.15
Parker, H.16
Prednis, L.17
Ansari, Y.18
Choy, N.19
Deen, H.20
Geralt, M.21
Hazari, N.22
Hom, E.23
Karnes, M.24
Mulholland, C.25
Ndubaku, R.26
Schmidt, I.27
Guzman, P.28
Aguilar-Henonin, L.29
Schmid, M.30
Weigel, D.31
Carter, D.E.32
Marchand, T.33
Risseeuw, E.34
Brogden, D.35
Zeko, A.36
Crosby, W.L.37
Berry, C.C.38
Ecker, J.R.39
more..
-
2
-
-
0032544001
-
Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants
-
Barakat A, Matassi G, Bernard G (1998) Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants. Proc Natl Acad Sci USA 95:10044-10049
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 10044-10049
-
-
Barakat, A.1
Matassi, G.2
Bernard, G.3
-
3
-
-
0034646829
-
The distribution of T-DNA in the genomes of transgenic Arabidopsis and rice
-
Barakat A, Gallois P, Raynal M, Mestre-Ortega D, Sallaud C, Guiderdoni E, Delseny M, Bernardi G (2000) The distribution of T-DNA in the genomes of transgenic Arabidopsis and rice. FEBS Lett 471:161-164
-
(2000)
FEBS Lett
, vol.471
, pp. 161-164
-
-
Barakat, A.1
Gallois, P.2
Raynal, M.3
Mestre-Ortega, D.4
Sallaud, C.5
Guiderdoni, E.6
Delseny, M.7
Bernardi, G.8
-
4
-
-
0029587471
-
The human genome: Organization and evolutionary history
-
Bernardi G (1995) The human genome: Organization and evolutionary history. Annu Rev Genet 29:445-476
-
(1995)
Annu Rev Genet
, vol.29
, pp. 445-476
-
-
Bernardi, G.1
-
5
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi G (2000) Isochores and the evolutionary genomics of vertebrates. Gene 241:3-17
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
6
-
-
0034117544
-
Two classes of genes in plants
-
Carels N, Bernardi G (2000) Two classes of genes in plants. Genetics 154:1819-1825
-
(2000)
Genetics
, vol.154
, pp. 1819-1825
-
-
Carels, N.1
Bernardi, G.2
-
7
-
-
0030077335
-
Human coding and noncoding DNA: Compositional correlations
-
Clay O, Caccio S, Zoubak S, Mouchiroud D, Bernardi G (1996) Human coding and noncoding DNA: compositional correlations. Mol Phylogenet Evol 5:2-12
-
(1996)
Mol Phylogenet Evol
, vol.5
, pp. 2-12
-
-
Clay, O.1
Caccio, S.2
Zoubak, S.3
Mouchiroud, D.4
Bernardi, G.5
-
8
-
-
0033601285
-
Genetic definition and sequence analysis of Arabidopsis centromeres
-
Copenhaver GP, Nickel K, Kuromori T, Benito MI, Kaul S, Lin X, Bevan M, Murphy G, Harris B, Parnell LD, McCombie WR, Martienssen RA, Marra M, Preuss D (1999) Genetic definition and sequence analysis of Arabidopsis centromeres. Science 286:2468-2474
-
(1999)
Science
, vol.286
, pp. 2468-2474
-
-
Copenhaver, G.P.1
Nickel, K.2
Kuromori, T.3
Benito, M.I.4
Kaul, S.5
Lin, X.6
Bevan, M.7
Murphy, G.8
Harris, B.9
Parnell, L.D.10
McCombie, W.R.11
Martienssen, R.A.12
Marra, M.13
Preuss, D.14
-
9
-
-
0033018384
-
Evidence of selection on silent site base composition in mammals: Potential implications for the evolution of isochores and junk DNA
-
Eyre-Walker A (1999) Evidence of selection on silent site base composition in mammals: Potential implications for the evolution of isochores and junk DNA. Genetics 152:675-683
-
(1999)
Genetics
, vol.152
, pp. 675-683
-
-
Eyre-Walker, A.1
-
11
-
-
0034869884
-
The centromere 1 (CEN1) region of Arabidopsis thaliana: Architecture and functional impact of chromatin
-
Haupt W, Fischer TC, Winderl S, Fransz P, Torres-Ruiz RA (2001) The centromere 1 (CEN1) region of Arabidopsis thaliana: Architecture and functional impact of chromatin. Plant J 27:285-296
-
(2001)
Plant J
, vol.27
, pp. 285-296
-
-
Haupt, W.1
Fischer, T.C.2
Winderl, S.3
Fransz, P.4
Torres-Ruiz, R.A.5
-
12
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
LeVine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
Shownkeen, R.65
Sims, S.66
Waterston, R.H.67
Wilson, R.K.68
Hillier, L.W.69
McPherson, J.D.70
Marra, M.A.71
Mardis, E.R.72
Fulton, L.A.73
Chinwalla, A.T.74
Pepin, K.H.75
Gish, W.R.76
Chissoe, S.L.77
Wendl, M.C.78
Delehaunty, K.D.79
Miner, T.L.80
Delehaunty, A.81
Kramer, J.B.82
Cook, L.L.83
Fulton, R.S.84
Johnson, D.L.85
Minx, P.J.86
Clifton, S.W.87
Hawkins, T.88
Branscomb, E.89
Predki, P.90
Richardson, P.91
Wenning, S.92
Slezak, T.93
Doggett, N.94
Cheng, J.F.95
Olsen, A.96
Lucas, S.97
Elkin, C.98
Uberbacher, E.99
more..
-
13
-
-
0035802384
-
Delineating relative homogeneous G + C domains in DNA sequences
-
Li W (2001) Delineating relative homogeneous G + C domains in DNA sequences. Gene 276:57-72
-
(2001)
Gene
, vol.276
, pp. 57-72
-
-
Li, W.1
-
14
-
-
0035984483
-
Applications of recursive segmentation to the analysis of DNA sequences
-
Li W, Bernaola-Galvan P, Haghighi F, Grosse I (2002) Applications of recursive segmentation to the analysis of DNA sequences. Comput Chem 26:491-510
-
(2002)
Comput Chem
, vol.26
, pp. 491-510
-
-
Li, W.1
Bernaola-Galvan, P.2
Haghighi, F.3
Grosse, I.4
-
15
-
-
0017173987
-
An approach on the organization of eukaryotic genomes at a macromolecular level
-
Macaya G, Thiery JP, Bernardi G (1976) An approach on the organization of eukaryotic genomes at a macromolecular level. J Mol Biol 108:237-254
-
(1976)
J Mol Biol
, vol.108
, pp. 237-254
-
-
Macaya, G.1
Thiery, J.P.2
Bernardi, G.3
-
16
-
-
0024967188
-
The isochore organization and the compositional distribution of homologous coding sequences in the nuclear genome of plants
-
Matassi G, Montero LM, Salinas J, Bernardi G (1989) The isochore organization and the compositional distribution of homologous coding sequences in the nuclear genome of plants. Nucleic Acids Res 17:5273-5290
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 5273-5290
-
-
Matassi, G.1
Montero, L.M.2
Salinas, J.3
Bernardi, G.4
-
17
-
-
0000680302
-
Chromosome morphology in Zea mays
-
McClintock B (1929) Chromosome morphology in Zea mays. Science 69:629
-
(1929)
Science
, vol.69
, pp. 629
-
-
McClintock, B.1
-
18
-
-
0343804994
-
Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA
-
Meunier-Rotival M, Soriano P, Cuny G, Strauss F, Bernardi G (1982) Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA. Proc Natl Acad Sci USA 79:355-359
-
(1982)
Proc Natl Acad Sci USA
, vol.79
, pp. 355-359
-
-
Meunier-Rotival, M.1
Soriano, P.2
Cuny, G.3
Strauss, F.4
Bernardi, G.5
-
19
-
-
0025361547
-
Gene distribution and isochore organization in the nuclear genome of plants
-
Montero LM, Salinas J, Matassi Bernardi G (1990) Gene distribution and isochore organization in the nuclear genome of plants. Nucleic Acids Res 18:1859-1867
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 1859-1867
-
-
Montero, L.M.1
Salinas, J.2
Matassi Bernardi, G.3
-
20
-
-
0034520771
-
Assessment of compositional heterogeneity within and between eukaryotic genomes
-
Nekrutenko A, Li WH (2000) Assessment of compositional heterogeneity within and between eukaryotic genomes. Genome Res 10:1986-1995
-
(2000)
Genome Res
, vol.10
, pp. 1986-1995
-
-
Nekrutenko, A.1
Li, W.H.2
-
22
-
-
18744381824
-
Isochore chromosome maps of the human genome
-
Oliver JL, Carpena P, Roman-Roldan R, Mata-Balaguer T, Mejias-Romero A, Hackenberg M, Bernaola-Galvan P (2002) Isochore chromosome maps of the human genome. Gene 300:117-127
-
(2002)
Gene
, vol.300
, pp. 117-127
-
-
Oliver, J.L.1
Carpena, P.2
Roman-Roldan, R.3
Mata-Balaguer, T.4
Mejias-Romero, A.5
Hackenberg, M.6
Bernaola-Galvan, P.7
-
23
-
-
0037196383
-
A compact view of isochores in the draft human genome sequence
-
Pavlicek A, Paces J, Clay O, Bernardi G (2002) A compact view of isochores in the draft human genome sequence. FEBS Lett 511:165-169
-
(2002)
FEBS Lett
, vol.511
, pp. 165-169
-
-
Pavlicek, A.1
Paces, J.2
Clay, O.3
Bernardi, G.4
-
24
-
-
0033499841
-
Segmentation of yeast DNA using hidden Markov models
-
Peshkin L, Gelfand MS (1999) Segmentation of yeast DNA using hidden Markov models. Bioinformatics 15:980-986
-
(1999)
Bioinformatics
, vol.15
, pp. 980-986
-
-
Peshkin, L.1
Gelfand, M.S.2
-
26
-
-
77957211231
-
Cytogenetic studies on a transmissible deficiency in chromosome 3 of maize
-
Rhoades MM, Dempsey E (1973) Cytogenetic studies on a transmissible deficiency in chromosome 3 of maize. J Hered 64:13-18
-
(1973)
J Hered
, vol.64
, pp. 13-18
-
-
Rhoades, M.M.1
Dempsey, E.2
-
27
-
-
0027136190
-
Correlations between isochores and chromosomal bands in the human genome
-
Saccone S, De Sario A, Wiegant J, Raap AK, Della Valle G, Bernardi G (1993) Correlations between isochores and chromosomal bands in the human genome. Proc Natl Acad Sci USA 90:11929-11933
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 11929-11933
-
-
Saccone, S.1
De Sario, A.2
Wiegant, J.3
Raap, A.K.4
Della Valle, G.5
Bernardi, G.6
-
28
-
-
0024296835
-
Compositional compartmentalization and compositional patterns in the nuclear genomes of plants
-
Salinas J, Matassi G, Montero LM, Bernardi G (1988) Compositional compartmentalization and compositional patterns in the nuclear genomes of plants. Nucleic Acids Res 16:4269-4285
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 4269-4285
-
-
Salinas, J.1
Matassi, G.2
Montero, L.M.3
Bernardi, G.4
-
29
-
-
0037162715
-
HIV-1 integration in the human genome favors active genes and local hotspots
-
Schroder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F (2002) HIV-1 integration in the human genome favors active genes and local hotspots. Cell 110:521-529
-
(2002)
Cell
, vol.110
, pp. 521-529
-
-
Schroder, A.R.1
Shinn, P.2
Chen, H.3
Berry, C.4
Ecker, J.R.5
Bushman, F.6
-
30
-
-
0030917145
-
Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex
-
Tenzen T, Yamagata T, Fukagawa T, Sugaya K, Ando A, Inoko H, Gojobori T, Fujiyama A. Okumura K, Ikemura T (1997) Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex. Mol Cell Biol 17:4043-4050
-
(1997)
Mol Cell Biol
, vol.17
, pp. 4043-4050
-
-
Tenzen, T.1
Yamagata, T.2
Fukagawa, T.3
Sugaya, K.4
Ando, A.5
Inoko, H.6
Gojobori, T.7
Fujiyama, A.8
Okumura, K.9
Ikemura, T.10
-
31
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
32
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigo R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
Antonarakis, S.E.11
Attwood, J.12
Baertsch, R.13
Bailey, J.14
Barlow, K.15
Beck, S.16
Berry, E.17
Birren, B.18
Bloom, T.19
Bork, P.20
Botcherby, M.21
Bray, N.22
Brent, M.R.23
Brown, D.G.24
Brown, S.D.25
Bult, C.26
Burton, J.27
Butler, J.28
Campbell, R.D.29
Carninci, P.30
Cawley, S.31
Chiaromonte, F.32
Chinwalla, A.T.33
Church, D.M.34
Clamp, M.35
Clee, C.36
Collins, F.S.37
Cook, L.L.38
Copley, R.R.39
Coulson, A.40
Couronne, O.41
Cuff, J.42
Curwen, V.43
Cutts, T.44
Daly, M.45
David, R.46
Davies, J.47
Delehaunty, K.D.48
Deri, J.49
Dermitzakis, E.T.50
Dewey, C.51
Dickens, N.J.52
Diekhans, M.53
Dodge, S.54
Dubchak, I.55
Dunn, D.M.56
Eddy, S.R.57
Elnitski, L.58
Emes, R.D.59
Eswara, P.60
Eyras, E.61
Felsenfeld, A.62
Fewell, G.A.63
Flicek, P.64
Foley, K.65
Frankel, W.N.66
Fulton, L.A.67
Fulton, R.S.68
Furey, T.S.69
Gage, D.70
Gibbs, R.A.71
Glusman, G.72
Gnerre, S.73
Goldman, N.74
Goodstadt, L.75
Grafham, D.76
Graves, T.A.77
Green, E.D.78
Gregory, S.79
Guigo, R.80
Guyer, M.81
Hardison, R.C.82
Haussler, D.83
Hayashizaki, Y.84
Hillier, L.W.85
Hinrichs, A.86
Hlavina, W.87
Holzer, T.88
Hsu, F.89
Hua, A.90
Hubbard, T.91
Hunt, A.92
Jackson, I.93
Jaffe, D.B.94
Johnson, L.S.95
Jones, M.96
Jones, T.A.97
Joy, A.98
Kamal, M.99
more..
-
33
-
-
0043026711
-
Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana
-
Wright SI, Agrawal N, Bureau TE (2003) Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana. Genome Res 13:1897-1903
-
(2003)
Genome Res
, vol.13
, pp. 1897-1903
-
-
Wright, S.I.1
Agrawal, N.2
Bureau, T.E.3
-
34
-
-
0026059039
-
Analysis of distribution of bases in the coding sequences by a diagrammatic technique
-
Zhang CT, Zhang R (1991) Analysis of distribution of bases in the coding sequences by a diagrammatic technique. Nucleic Acids Res 19:6313-6317
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 6313-6317
-
-
Zhang, C.T.1
Zhang, R.2
-
35
-
-
0012914683
-
An isochore map of the human genome based on the Z curve method
-
Zhang CT, Zhang R (2003) An isochore map of the human genome based on the Z curve method. Gene 317:127-135
-
(2003)
Gene
, vol.317
, pp. 127-135
-
-
Zhang, C.T.1
Zhang, R.2
-
36
-
-
0034755052
-
A novel method to calculate the G + C content of genomic DNA sequences
-
Zhang CT, Wang J, Zhang R (2001) A novel method to calculate the G + C content of genomic DNA sequences. J Biomol Struct Dyn 19:333-341
-
(2001)
J Biomol Struct Dyn
, vol.19
, pp. 333-341
-
-
Zhang, C.T.1
Wang, J.2
Zhang, R.3
-
37
-
-
0027995001
-
Z curves, an intuitive tool for visualizing and analyzing the DNA sequences
-
Zhang R, Zhang CT (1994) Z curves, an intuitive tool for visualizing and analyzing the DNA sequences. J Biomol Struct Dyn 11:767-782
-
(1994)
J Biomol Struct Dyn
, vol.11
, pp. 767-782
-
-
Zhang, R.1
Zhang, C.T.2
-
38
-
-
0030603239
-
The gene distribution of the human genome
-
Zoubak S, Clay O, Bernardi G (1996) The gene distribution of the human genome. Gene 174:95-102
-
(1996)
Gene
, vol.174
, pp. 95-102
-
-
Zoubak, S.1
Clay, O.2
Bernardi, G.3
|