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Volumn 59, Issue 2, 2004, Pages 227-238

Isochore structures in the genome of the plant Arabidopsis thaliana

Author keywords

Arabidopsis thaliana; Compositional homogeneity; Isochores; Windowless technique

Indexed keywords

DNA;

EID: 4344700574     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-004-2617-8     Document Type: Article
Times cited : (21)

References (38)
  • 2
    • 0032544001 scopus 로고    scopus 로고
    • Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants
    • Barakat A, Matassi G, Bernard G (1998) Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants. Proc Natl Acad Sci USA 95:10044-10049
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 10044-10049
    • Barakat, A.1    Matassi, G.2    Bernard, G.3
  • 4
    • 0029587471 scopus 로고
    • The human genome: Organization and evolutionary history
    • Bernardi G (1995) The human genome: Organization and evolutionary history. Annu Rev Genet 29:445-476
    • (1995) Annu Rev Genet , vol.29 , pp. 445-476
    • Bernardi, G.1
  • 5
    • 0033991967 scopus 로고    scopus 로고
    • Isochores and the evolutionary genomics of vertebrates
    • Bernardi G (2000) Isochores and the evolutionary genomics of vertebrates. Gene 241:3-17
    • (2000) Gene , vol.241 , pp. 3-17
    • Bernardi, G.1
  • 6
    • 0034117544 scopus 로고    scopus 로고
    • Two classes of genes in plants
    • Carels N, Bernardi G (2000) Two classes of genes in plants. Genetics 154:1819-1825
    • (2000) Genetics , vol.154 , pp. 1819-1825
    • Carels, N.1    Bernardi, G.2
  • 9
    • 0033018384 scopus 로고    scopus 로고
    • Evidence of selection on silent site base composition in mammals: Potential implications for the evolution of isochores and junk DNA
    • Eyre-Walker A (1999) Evidence of selection on silent site base composition in mammals: Potential implications for the evolution of isochores and junk DNA. Genetics 152:675-683
    • (1999) Genetics , vol.152 , pp. 675-683
    • Eyre-Walker, A.1
  • 11
    • 0034869884 scopus 로고    scopus 로고
    • The centromere 1 (CEN1) region of Arabidopsis thaliana: Architecture and functional impact of chromatin
    • Haupt W, Fischer TC, Winderl S, Fransz P, Torres-Ruiz RA (2001) The centromere 1 (CEN1) region of Arabidopsis thaliana: Architecture and functional impact of chromatin. Plant J 27:285-296
    • (2001) Plant J , vol.27 , pp. 285-296
    • Haupt, W.1    Fischer, T.C.2    Winderl, S.3    Fransz, P.4    Torres-Ruiz, R.A.5
  • 13
    • 0035802384 scopus 로고    scopus 로고
    • Delineating relative homogeneous G + C domains in DNA sequences
    • Li W (2001) Delineating relative homogeneous G + C domains in DNA sequences. Gene 276:57-72
    • (2001) Gene , vol.276 , pp. 57-72
    • Li, W.1
  • 14
    • 0035984483 scopus 로고    scopus 로고
    • Applications of recursive segmentation to the analysis of DNA sequences
    • Li W, Bernaola-Galvan P, Haghighi F, Grosse I (2002) Applications of recursive segmentation to the analysis of DNA sequences. Comput Chem 26:491-510
    • (2002) Comput Chem , vol.26 , pp. 491-510
    • Li, W.1    Bernaola-Galvan, P.2    Haghighi, F.3    Grosse, I.4
  • 15
    • 0017173987 scopus 로고
    • An approach on the organization of eukaryotic genomes at a macromolecular level
    • Macaya G, Thiery JP, Bernardi G (1976) An approach on the organization of eukaryotic genomes at a macromolecular level. J Mol Biol 108:237-254
    • (1976) J Mol Biol , vol.108 , pp. 237-254
    • Macaya, G.1    Thiery, J.P.2    Bernardi, G.3
  • 16
    • 0024967188 scopus 로고
    • The isochore organization and the compositional distribution of homologous coding sequences in the nuclear genome of plants
    • Matassi G, Montero LM, Salinas J, Bernardi G (1989) The isochore organization and the compositional distribution of homologous coding sequences in the nuclear genome of plants. Nucleic Acids Res 17:5273-5290
    • (1989) Nucleic Acids Res , vol.17 , pp. 5273-5290
    • Matassi, G.1    Montero, L.M.2    Salinas, J.3    Bernardi, G.4
  • 17
    • 0000680302 scopus 로고
    • Chromosome morphology in Zea mays
    • McClintock B (1929) Chromosome morphology in Zea mays. Science 69:629
    • (1929) Science , vol.69 , pp. 629
    • McClintock, B.1
  • 18
    • 0343804994 scopus 로고
    • Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA
    • Meunier-Rotival M, Soriano P, Cuny G, Strauss F, Bernardi G (1982) Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA. Proc Natl Acad Sci USA 79:355-359
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 355-359
    • Meunier-Rotival, M.1    Soriano, P.2    Cuny, G.3    Strauss, F.4    Bernardi, G.5
  • 19
    • 0025361547 scopus 로고
    • Gene distribution and isochore organization in the nuclear genome of plants
    • Montero LM, Salinas J, Matassi Bernardi G (1990) Gene distribution and isochore organization in the nuclear genome of plants. Nucleic Acids Res 18:1859-1867
    • (1990) Nucleic Acids Res , vol.18 , pp. 1859-1867
    • Montero, L.M.1    Salinas, J.2    Matassi Bernardi, G.3
  • 20
    • 0034520771 scopus 로고    scopus 로고
    • Assessment of compositional heterogeneity within and between eukaryotic genomes
    • Nekrutenko A, Li WH (2000) Assessment of compositional heterogeneity within and between eukaryotic genomes. Genome Res 10:1986-1995
    • (2000) Genome Res , vol.10 , pp. 1986-1995
    • Nekrutenko, A.1    Li, W.H.2
  • 23
    • 0037196383 scopus 로고    scopus 로고
    • A compact view of isochores in the draft human genome sequence
    • Pavlicek A, Paces J, Clay O, Bernardi G (2002) A compact view of isochores in the draft human genome sequence. FEBS Lett 511:165-169
    • (2002) FEBS Lett , vol.511 , pp. 165-169
    • Pavlicek, A.1    Paces, J.2    Clay, O.3    Bernardi, G.4
  • 24
    • 0033499841 scopus 로고    scopus 로고
    • Segmentation of yeast DNA using hidden Markov models
    • Peshkin L, Gelfand MS (1999) Segmentation of yeast DNA using hidden Markov models. Bioinformatics 15:980-986
    • (1999) Bioinformatics , vol.15 , pp. 980-986
    • Peshkin, L.1    Gelfand, M.S.2
  • 26
    • 77957211231 scopus 로고
    • Cytogenetic studies on a transmissible deficiency in chromosome 3 of maize
    • Rhoades MM, Dempsey E (1973) Cytogenetic studies on a transmissible deficiency in chromosome 3 of maize. J Hered 64:13-18
    • (1973) J Hered , vol.64 , pp. 13-18
    • Rhoades, M.M.1    Dempsey, E.2
  • 28
    • 0024296835 scopus 로고
    • Compositional compartmentalization and compositional patterns in the nuclear genomes of plants
    • Salinas J, Matassi G, Montero LM, Bernardi G (1988) Compositional compartmentalization and compositional patterns in the nuclear genomes of plants. Nucleic Acids Res 16:4269-4285
    • (1988) Nucleic Acids Res , vol.16 , pp. 4269-4285
    • Salinas, J.1    Matassi, G.2    Montero, L.M.3    Bernardi, G.4
  • 29
    • 0037162715 scopus 로고    scopus 로고
    • HIV-1 integration in the human genome favors active genes and local hotspots
    • Schroder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F (2002) HIV-1 integration in the human genome favors active genes and local hotspots. Cell 110:521-529
    • (2002) Cell , vol.110 , pp. 521-529
    • Schroder, A.R.1    Shinn, P.2    Chen, H.3    Berry, C.4    Ecker, J.R.5    Bushman, F.6
  • 31
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 33
    • 0043026711 scopus 로고    scopus 로고
    • Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana
    • Wright SI, Agrawal N, Bureau TE (2003) Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana. Genome Res 13:1897-1903
    • (2003) Genome Res , vol.13 , pp. 1897-1903
    • Wright, S.I.1    Agrawal, N.2    Bureau, T.E.3
  • 34
    • 0026059039 scopus 로고
    • Analysis of distribution of bases in the coding sequences by a diagrammatic technique
    • Zhang CT, Zhang R (1991) Analysis of distribution of bases in the coding sequences by a diagrammatic technique. Nucleic Acids Res 19:6313-6317
    • (1991) Nucleic Acids Res , vol.19 , pp. 6313-6317
    • Zhang, C.T.1    Zhang, R.2
  • 35
    • 0012914683 scopus 로고    scopus 로고
    • An isochore map of the human genome based on the Z curve method
    • Zhang CT, Zhang R (2003) An isochore map of the human genome based on the Z curve method. Gene 317:127-135
    • (2003) Gene , vol.317 , pp. 127-135
    • Zhang, C.T.1    Zhang, R.2
  • 36
    • 0034755052 scopus 로고    scopus 로고
    • A novel method to calculate the G + C content of genomic DNA sequences
    • Zhang CT, Wang J, Zhang R (2001) A novel method to calculate the G + C content of genomic DNA sequences. J Biomol Struct Dyn 19:333-341
    • (2001) J Biomol Struct Dyn , vol.19 , pp. 333-341
    • Zhang, C.T.1    Wang, J.2    Zhang, R.3
  • 37
    • 0027995001 scopus 로고
    • Z curves, an intuitive tool for visualizing and analyzing the DNA sequences
    • Zhang R, Zhang CT (1994) Z curves, an intuitive tool for visualizing and analyzing the DNA sequences. J Biomol Struct Dyn 11:767-782
    • (1994) J Biomol Struct Dyn , vol.11 , pp. 767-782
    • Zhang, R.1    Zhang, C.T.2
  • 38
    • 0030603239 scopus 로고    scopus 로고
    • The gene distribution of the human genome
    • Zoubak S, Clay O, Bernardi G (1996) The gene distribution of the human genome. Gene 174:95-102
    • (1996) Gene , vol.174 , pp. 95-102
    • Zoubak, S.1    Clay, O.2    Bernardi, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.