-
1
-
-
4243764255
-
Compositional segmentation and long-range fractal correlations in DNA sequences
-
Bernaola-Galván P., Román-Roldán R., Oliver J.L. Compositional segmentation and long-range fractal correlations in DNA sequences. Phys. Rev. E. 53:1996;5181-5189.
-
(1996)
Phys. Rev. E
, vol.53
, pp. 5181-5189
-
-
Bernaola-Galván, P.1
Román-Roldán, R.2
Oliver, J.L.3
-
3
-
-
0034238085
-
Finding borders between coding and non-coding regions by an entropic segmentation method
-
Bernaola-Galván P., Grosse I., Carpena P., Oliver J.L., Román-Roldán R., Stanley H.E. Finding borders between coding and non-coding regions by an entropic segmentation method. Phys. Rev. Lett. 85:2000;1342-1345.
-
(2000)
Phys. Rev. Lett.
, vol.85
, pp. 1342-1345
-
-
Bernaola-Galván, P.1
Grosse, I.2
Carpena, P.3
Oliver, J.L.4
Román-Roldán, R.5
Stanley, H.E.6
-
4
-
-
34548071582
-
Mapping isochores by entropic segmentation of long genome sequences
-
D. Sankoff, & T. Lengauer. New York: ACM Press
-
Bernaola-Galván P., Carpena P., Román-Roldán R., Oliver J.L. Mapping isochores by entropic segmentation of long genome sequences. Sankoff D., Lengauer T. RECOMB 2001: Proceedings of the Fifth Annual International Conference on Computational Biology, Montreal, Canada. 2001;217-218 ACM Press, New York.
-
(2001)
RECOMB 2001: Proceedings of the Fifth Annual International Conference on Computational Biology, Montreal, Canada
, pp. 217-218
-
-
Bernaola-Galván, P.1
Carpena, P.2
Román-Roldán, R.3
Oliver, J.L.4
-
6
-
-
0011986122
-
-
in preparation
-
Bernaola-Galván, P., Oliver, J.L., Carpena, P., Clay, O., Bernardi, G., 2002. Quantifying Intragenomic Heterogeneity in Prokaryotic Genomes, in preparation.
-
(2002)
Quantifying Intragenomic Heterogeneity in Prokaryotic Genomes
-
-
Bernaola-Galván, P.1
Oliver, J.L.2
Carpena, P.3
Clay, O.4
Bernardi, G.5
-
7
-
-
0029587471
-
The human genome: Organization and evolutionary history
-
Bernardi G. The human genome: organization and evolutionary history. Annu. Rev. Genet. 29:1995;445-476.
-
(1995)
Annu. Rev. Genet.
, vol.29
, pp. 445-476
-
-
Bernardi, G.1
-
8
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi G. Isochores and the evolutionary genomics of vertebrates. Gene. 241:2000;3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
9
-
-
0035802410
-
Misunderstandings about isochores. Part 1
-
Bernardi G. Misunderstandings about isochores. Part 1. Gene. 276:2001;3-13.
-
(2001)
Gene
, vol.276
, pp. 3-13
-
-
Bernardi, G.1
-
10
-
-
0021810948
-
The mosaic genome of warm-blooded vertebrates
-
Bernardi G., Olofsson B., Filipski J., Zerial M., Salinas J., Cuny G., Meunier-Rotival M., Rodier F. The mosaic genome of warm-blooded vertebrates. Science. 228:1985;953-958.
-
(1985)
Science
, vol.228
, pp. 953-958
-
-
Bernardi, G.1
Olofsson, B.2
Filipski, J.3
Zerial, M.4
Salinas, J.5
Cuny, G.6
Meunier-Rotival, M.7
Rodier, F.8
-
11
-
-
0027051693
-
Compositional mapping of the human dystrophin-encoding gene
-
Bettecken T., Aissani B., Müller C.R., Bernardi G. Compositional mapping of the human dystrophin-encoding gene. Gene. 122:1992;329-335.
-
(1992)
Gene
, vol.122
, pp. 329-335
-
-
Bettecken, T.1
Aissani, B.2
Müller, C.R.3
Bernardi, G.4
-
12
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge C., Karlin S. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268:1997;8-94.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 8-94
-
-
Burge, C.1
Karlin, S.2
-
14
-
-
0030052935
-
A compositional map of human chromosome band Xq28
-
De Sario A., Geigl E.-M., Palmieri G., D'Urso M., Bernardi G. A compositional map of human chromosome band Xq28. Proc. Natl. Acad. Sci. USA. 93:1996;1298-1302.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1298-1302
-
-
De Sario, A.1
Geigl, E.-M.2
Palmieri, G.3
D'Urso, M.4
Bernardi, G.5
-
15
-
-
0030767937
-
A compositional map of the cen-q21 region of human chromosome 21
-
De Sario A., Roizes G., Allegre N., Bernardi G. A compositional map of the cen-q21 region of human chromosome 21. Gene. 194:1997;107-113.
-
(1997)
Gene
, vol.194
, pp. 107-113
-
-
De Sario, A.1
Roizes, G.2
Allegre, N.3
Bernardi, G.4
-
16
-
-
79960655760
-
The DNA sequence of human chromosome 22
-
Dunham I., Shimizu N., Roe B.A., Chissoe S., et al. The DNA sequence of human chromosome 22. Nature. 402:1999;489-495.
-
(1999)
Nature
, vol.402
, pp. 489-495
-
-
Dunham, I.1
Shimizu, N.2
Roe, B.A.3
Chissoe, S.4
-
17
-
-
0033804748
-
An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium
-
Eisenbarth I., Vogel G., Krone W., Vogel W., Assum G. An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium. Am. J. Hum. Genet. 67:2000;873-880.
-
(2000)
Am. J. Hum. Genet.
, vol.67
, pp. 873-880
-
-
Eisenbarth, I.1
Vogel, G.2
Krone, W.3
Vogel, W.4
Assum, G.5
-
18
-
-
0035891855
-
Long-range sequence composition mirrors linkage disequilibrium pattern in a 1.13 Mb region of human chromosome 22
-
Eisenbarth I., Striebel A.M., Moschgath E., Vogel W., Assum G. Long-range sequence composition mirrors linkage disequilibrium pattern in a 1.13 Mb region of human chromosome 22. Hum. Mol. Genet. 10:2001;2833-2839.
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 2833-2839
-
-
Eisenbarth, I.1
Striebel, A.M.2
Moschgath, E.3
Vogel, W.4
Assum, G.5
-
20
-
-
0028898562
-
A boundary of long-range G+C% mosaic domains in the human MHC locus: Pseudoautosomal boundary-like sequence exists near the boundary
-
Fukagawa T., Sugaya K., Matsumoto K., Okumura K., Ando A., Inoko H., Ikemura T. A boundary of long-range G+C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary. Genomics. 25:1995;184-191.
-
(1995)
Genomics
, vol.25
, pp. 184-191
-
-
Fukagawa, T.1
Sugaya, K.2
Matsumoto, K.3
Okumura, K.4
Ando, A.5
Inoko, H.6
Ikemura, T.7
-
21
-
-
0030026645
-
Human pseudoautosomal boundary-like sequences: Expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes
-
Fukagawa T., Nakamura Y., Okumura K., Nogami M., Ando A., Inoko H., Saitou N., Ikemura T. Human pseudoautosomal boundary-like sequences: expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes. Hum. Mol. Genet. 5:1996;123-132.
-
(1996)
Hum. Mol. Genet.
, vol.5
, pp. 123-132
-
-
Fukagawa, T.1
Nakamura, Y.2
Okumura, K.3
Nogami, M.4
Ando, A.5
Inoko, H.6
Saitou, N.7
Ikemura, T.8
-
23
-
-
41349106744
-
Analysis of symbolic sequences using the Jensen-Shannon divergence measure
-
041905-1-041905-319
-
Grosse I., Bernaola-Galván P., Carpena P., Román-Roldán R., Oliver J.L., Stanley H.E. Analysis of symbolic sequences using the Jensen-Shannon divergence measure. Phys. Rev. E. 65:2002;014905-1-041905-16.
-
(2002)
Phys. Rev. E
, vol.65
-
-
Grosse, I.1
Bernaola-Galván, P.2
Carpena, P.3
Román-Roldán, R.4
Oliver, J.L.5
Stanley, H.E.6
-
24
-
-
0034806988
-
No isochores in the human chromosomes 21 and 22?
-
Häring D., Kypr J. No isochores in the human chromosomes 21 and 22? Biochem. Biophys. Res. Commun. 280:2001;567-573.
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.280
, pp. 567-573
-
-
Häring, D.1
Kypr, J.2
-
25
-
-
0034682403
-
The DNA sequence of human chromosome 21
-
Hattori M., et al. The DNA sequence of human chromosome 21. Nature. 405:2000;311-319.
-
(2000)
Nature
, vol.405
, pp. 311-319
-
-
Hattori, M.1
-
26
-
-
0034284437
-
RepBase update: A database and an electronic journal of repetitive elements
-
Jurka J. RepBase update: a database and an electronic journal of repetitive elements. Trends Genet. 16:2000;418-420.
-
(2000)
Trends Genet.
, vol.16
, pp. 418-420
-
-
Jurka, J.1
-
27
-
-
0030045979
-
The age of Alu subfamilies
-
Kapitonov V., Jurka J. The age of Alu subfamilies. J. Mol. Evol. 42:1996;59-65.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 59-65
-
-
Kapitonov, V.1
Jurka, J.2
-
29
-
-
2042437650
-
International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome
-
Lander E.S., Waterston R.H., Sulston J., Collins F.S., et al. International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature. 409:2001;860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Waterston, R.H.2
Sulston, J.3
Collins, F.S.4
-
30
-
-
0035802384
-
Delineating relative homogeneous G+C domains in DNA sequences
-
Li W. Delineating relative homogeneous G+C domains in DNA sequences. Gene. 276:2001;57-72.
-
(2001)
Gene
, vol.276
, pp. 57-72
-
-
Li, W.1
-
31
-
-
84956088098
-
α spectrum in a noncoding DNA sequence
-
α spectrum in a noncoding DNA sequence. Europhys. Lett. 17:1992;655.
-
(1992)
Europhys. Lett.
, vol.17
, pp. 655
-
-
Li, W.1
Kaneko, K.2
-
32
-
-
0031731186
-
Compositional heterogeneity within, and uniformity between, DNA sequences of yeast chromosomes
-
Li W., Stolovitzky G., Bernaola-Galván P., Oliver J.L. Compositional heterogeneity within, and uniformity between, DNA sequences of yeast chromosomes. Genome Res. 8:1998;916-928.
-
(1998)
Genome Res.
, vol.8
, pp. 916-928
-
-
Li, W.1
Stolovitzky, G.2
Bernaola-Galván, P.3
Oliver, J.L.4
-
33
-
-
0011933234
-
-
submitted for publication
-
Li, W., Bernaola-Galván, P., Carpena, P., Oliver, J.L., 2002. Isochores merit the prefix 'Iso', submitted for publication.
-
(2002)
Isochores Merit the Prefix 'Iso'
-
-
Li, W.1
Bernaola-Galván, P.2
Carpena, P.3
Oliver, J.L.4
-
34
-
-
0017173987
-
An approach to the organization of eukaryotic genomes at a macromolecular level
-
Macaya G., Thiery J.P., Bernardi G. An approach to the organization of eukaryotic genomes at a macromolecular level. J. Mol. Biol. 108:1976;237-254.
-
(1976)
J. Mol. Biol.
, vol.108
, pp. 237-254
-
-
Macaya, G.1
Thiery, J.P.2
Bernardi, G.3
-
35
-
-
0027536813
-
Evolution of base composition in T-DNA genes from Agrobacterium
-
Martínez Zapater J.M., Marín A., Oliver J.L. Evolution of base composition in T-DNA genes from Agrobacterium. Mol. Biol. Evol. 10:(2):1993;437-448.
-
(1993)
Mol. Biol. Evol.
, vol.10
, Issue.2
, pp. 437-448
-
-
Martínez Zapater, J.M.1
Marín, A.2
Oliver, J.L.3
-
37
-
-
0025884418
-
The distribution of genes in the human genome
-
Mouchiroud D., D'Onofrio G., Aïssani B., Macaya G., Gautier C., Bernardi G. The distribution of genes in the human genome. Gene. 100:1991;181-187.
-
(1991)
Gene
, vol.100
, pp. 181-187
-
-
Mouchiroud, D.1
D'Onofrio, G.2
Aïssani, B.3
Macaya, G.4
Gautier, C.5
Bernardi, G.6
-
38
-
-
0034520771
-
Assessment of compositional heterogeneity within and between eukaryotic genomes
-
Nekrutenko A., Li W.H. Assessment of compositional heterogeneity within and between eukaryotic genomes. Genome Res. 10:2000;1986-1995.
-
(2000)
Genome Res.
, vol.10
, pp. 1986-1995
-
-
Nekrutenko, A.1
Li, W.H.2
-
39
-
-
0025174081
-
Chloroplast genes transferred to the nuclear plant genome have adjusted to nuclear base composition and codon usage
-
Oliver J.L., Marín A., Martínez Zapater J.M. Chloroplast genes transferred to the nuclear plant genome have adjusted to nuclear base composition and codon usage. Nucleic Acids Res. 18:(1):1990;65-73.
-
(1990)
Nucleic Acids Res.
, vol.18
, Issue.1
, pp. 65-73
-
-
Oliver, J.L.1
Marín, A.2
Martínez Zapater, J.M.3
-
43
-
-
0035802397
-
Similar integration but different stability of Alus and LINEs in the human genome
-
Pavlícek A., Jabbari K., Paces J., Paces V., Hejnar J., Bernardi G. Similar integration but different stability of Alus and LINEs in the human genome. Gene. 276:2001;39-45.
-
(2001)
Gene
, vol.276
, pp. 39-45
-
-
Pavlícek, A.1
Jabbari, K.2
Paces, J.3
Paces, V.4
Hejnar, J.5
Bernardi, G.6
-
44
-
-
0026585152
-
Long-range correlations in nucleotide sequences
-
Peng C.-K., Buldyrev S.V., Goldberger A.L., Havlin S., Sciortino F., Simons M., Stanley H.E. Long-range correlations in nucleotide sequences. Nature. 356:1992;168-170.
-
(1992)
Nature
, vol.356
, pp. 168-170
-
-
Peng, C.-K.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Sciortino, F.5
Simons, M.6
Stanley, H.E.7
-
45
-
-
0027261513
-
Isochores and CpG islands in YAC contigs in human X26.1-qter
-
Pilia G., Little R.D., Aïssani B., Bernardi G., Schlessinger D. Isochores and CpG islands in YAC contigs in human X26.1-qter. Genomics. 17:1993;456-462.
-
(1993)
Genomics
, vol.17
, pp. 456-462
-
-
Pilia, G.1
Little, R.D.2
Aïssani, B.3
Bernardi, G.4
Schlessinger, D.5
-
46
-
-
0000387692
-
Sequence compositional complexity of DNA through an entropic segmentation method
-
Román-Roldán R., Bernaola-Galván P., Oliver J.L. Sequence compositional complexity of DNA through an entropic segmentation method. Phys. Rev. Lett. 80:1998;1344-1347.
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 1344-1347
-
-
Román-Roldán, R.1
Bernaola-Galván, P.2
Oliver, J.L.3
-
48
-
-
0027136190
-
Correlations between isochores and chromosomal bands in the human genome
-
Saccone S., De Sario A., Wiegant J., Rap A.K., Della Valle G., Bernardi G. Correlations between isochores and chromosomal bands in the human genome. Proc. Natl. Acad. Sci. USA. 90:1993;11929-11933.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 11929-11933
-
-
Saccone, S.1
De Sario, A.2
Wiegant, J.3
Rap, A.K.4
Della Valle, G.5
Bernardi, G.6
-
49
-
-
0032784908
-
Interspersed repeats and other mementos of transposable elements in mammalian genomes
-
Smit A.F. Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev. 9:1999;657-663.
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 657-663
-
-
Smit, A.F.1
-
50
-
-
0010314873
-
The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes
-
Soriano P., Meunier-Rotival M., Bernardi G. The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes. Proc. Natl. Acad. Sci. USA. 80:1983;1816-1820.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 1816-1820
-
-
Soriano, P.1
Meunier-Rotival, M.2
Bernardi, G.3
-
51
-
-
0033609808
-
Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC
-
Stephens R., Horton R., Humphray S., Rowen L., Trowsdale J., Beck S. Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC. J. Mol. Biol. 291:1999;789-799.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 789-799
-
-
Stephens, R.1
Horton, R.2
Humphray, S.3
Rowen, L.4
Trowsdale, J.5
Beck, S.6
-
52
-
-
0030917145
-
Precise switching of DNA replication timing in the GC content transition area in the human MHC
-
Tenzen T., Yamagata T., Fukagawa T., Sugaya K., Ando A., Inoko H., Gojobori T., Fujiyama A., Okumura K., Ikemura T. Precise switching of DNA replication timing in the GC content transition area in the human MHC. Mol. Cell. Biol. 17:1997;4043-4050.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 4043-4050
-
-
Tenzen, T.1
Yamagata, T.2
Fukagawa, T.3
Sugaya, K.4
Ando, A.5
Inoko, H.6
Gojobori, T.7
Fujiyama, A.8
Okumura, K.9
Ikemura, T.10
-
53
-
-
0344721480
-
Complete sequence and gene map of a human major histocompatibility complex
-
Complete sequence and gene map of a human major histocompatibility complex. Nature. 401:1999;921-923.
-
(1999)
Nature
, vol.401
, pp. 921-923
-
-
-
54
-
-
0035895505
-
The sequence of the human genome
-
Venter J.C., et al. The sequence of the human genome. Science. 291:2001;1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
-
55
-
-
0000204878
-
Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
-
Voss R. Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68:1992;3805-3808.
-
(1992)
Phys. Rev. Lett.
, vol.68
, pp. 3805-3808
-
-
Voss, R.1
-
56
-
-
0030603239
-
The gene distribution of the human genome
-
Zoubak S., Clay O., Bernardi G. The gene distribution of the human genome. Gene. 174:1996;95-102.
-
(1996)
Gene
, vol.174
, pp. 95-102
-
-
Zoubak, S.1
Clay, O.2
Bernardi, G.3
|